Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G131500 Populus trichocarpa HOM05D008003 ORTHO05D010079 1.1e-116 423.3 217 100.0
Sabra02G0103400 Salix brachista HOM05D008003 ORTHO05D010079 8.0e-83 310.8 186 84.4
COL.COLO4_26389 Corchorus olitorius HOM05D000499 ORTHO05D007471 6.2e-67 258.1 180 73.9
Haze_17611 Corylus avellana HOM05D008003 ORTHO05D010079 1.2e-65 253.8 192 70.8
Thecc.08G020300 Theobroma cacao HOM05D008003 ORTHO05D010079 1.2e-65 253.8 190 71.6
Duzib116G0363 Durio zibethinus HOM05D008003 ORTHO05D010079 3.4e-65 252.3 184 71.2
Cfa018459 Carpinus fangiana HOM05D008003 ORTHO05D010079 5.8e-65 251.5 187 70.6
QL02p007150 Quercus lobata HOM05D008003 ORTHO05D010079 7.1e-63 244.6 186 70.4
Gohir.D05G200500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 9.2e-63 244.2 189 67.7
Gorai.009G205800 Gossypium raimondii HOM05D008003 ORTHO05D010079 9.2e-63 244.2 189 67.7
Duzib116G0025 Durio zibethinus HOM05D008003 ORTHO05D010079 1.3e-61 240.4 184 69.0
RcHm_v2.0_Chr6g0294451 Rosa chinensis HOM05D008003 ORTHO05D010079 1.7e-61 240.0 191 68.1
GSVIVG01009625001 Vitis vinifera HOM05D000499 ORTHO05D007471 3.9e-61 238.8 185 67.0
FvH4_2g26081 Fragaria vesca HOM05D008003 ORTHO05D010079 1.1e-60 237.3 191 67.0
Aqoxy5G01740 Aquilegia oxysepala HOM05D008003 ORTHO05D010079 1.5e-60 236.9 193 63.7
Manes.05G165700 Manihot esculenta HOM05D008003 ORTHO05D010079 4.3e-60 235.3 194 66.5
Nn5g29446 Nelumbo nucifera HOM05D008003 ORTHO05D010079 2.8e-59 232.6 183 65.6
Atru.chr13.573 Acer truncatum HOM05D008003 ORTHO05D010079 1.4e-58 230.3 195 67.2
CiPaw.16G052800 Carya illinoinensis HOM05D008003 ORTHO05D010079 1.8e-58 229.9 190 64.2
CANSAT56G3107 Cannabis sativa HOM05D008003 ORTHO05D010079 1.3e-56 223.8 209 61.2
PSO170G4120 Papaver somniferum HOM05D008003 ORTHO05D010079 1.3e-56 223.8 199 58.8
Hma1.2p1_0260F.1_g104350 Hydrangea macrophylla HOM05D008003 ORTHO05D010079 2.9e-56 222.6 189 61.4
Cc10_g03530 Coffea canephora HOM05D000499 ORTHO05D007471 4.9e-56 221.9 194 62.4
MD11G1306400 Malus domestica HOM05D008003 ORTHO05D010079 4.2e-55 218.8 204 61.8
TPR.G12880 Trifolium pratense HOM05D008003 ORTHO05D010079 7.1e-55 218.0 186 62.9
Ca_17236_v3 Cicer arietinum L. HOM05D008003 ORTHO05D010079 1.2e-54 217.2 183 62.8
PGR031G0927 Punica granatum HOM05D008003 ORTHO05D010079 1.2e-54 217.2 191 63.9
MBI16_g13167_MAGBIO Magnolia biondii HOM05D008003 ORTHO05D010079 1.6e-54 216.9 197 62.4
Medtr8g106450 Medicago truncatula HOM05D008003 ORTHO05D010079 1.3e-53 213.8 186 62.4
Ciclev10002654m.g Citrus clementina HOM05D008003 ORTHO05D010079 2.3e-53 213.0 191 63.9
Sed0001684 Sechium edule HOM05D008003 ORTHO05D010079 3.9e-53 212.2 201 56.7
PSO700G0197 Papaver somniferum HOM05D008003 ORTHO05D010079 4.3e-52 208.8 199 57.3
Lalb_Chr14g0370901 Lupinus albus HOM05D008003 ORTHO05D010079 9.6e-52 207.6 182 58.2
Oeu004673.1 Olea europaea HOM05D008003 ORTHO05D010079 9.6e-52 207.6 183 62.3
Gohir.A05G197500 Gossypium hirsutum HOM05D008003 ORTHO05D010079 2.1e-51 206.5 143 71.3
Cpa.g.sc64.35 Carica papaya HOM05D008003 ORTHO05D010079 3.6e-51 205.7 175 61.1
Nitab4.5_0003884g0080 Nicotiana tabacum HOM05D008003 ORTHO05D010079 3.6e-51 205.7 189 59.8
DCAR_020952 Daucus carota HOM05D000499 ORTHO05D007471 6.2e-51 204.9 209 54.5
SGA_v2.0_scaffold33G13535 Striga asiatica HOM05D008003 ORTHO05D010079 6.2e-51 204.9 192 58.9
TWI36G0609 Tripterygium wilfordii HOM05D008003 ORTHO05D010079 8.1e-51 204.5 199 60.3
Peaxi162Scf00337g00617 Petunia axillaris HOM05D008003 ORTHO05D010079 2.6e-49 199.5 180 58.9
HanXRQChr02g0045861 Helianthus annuus HOM05D008003 ORTHO05D010079 5.8e-49 198.4 194 55.7
AUR62033864 Chenopodium quinoa HOM05D008003 ORTHO05D010079 7.6e-49 198.0 187 54.5
Prupe.8G265000 Prunus persica HOM05D008003 ORTHO05D010079 1.7e-48 196.8 196 60.7
Medtr8g106405 Medicago truncatula HOM05D008003 ORTHO05D010079 3.8e-48 195.7 156 62.2
CSS0033209 Camellia sinensis var. sinensis HOM05D008003 ORTHO05D010079 6.4e-48 194.9 193 59.6
MELO3C012606.2 Cucumis melo HOM05D008003 ORTHO05D010079 8.4e-48 194.5 182 53.8
Glyma.05G242100 Glycine max HOM05D008003 ORTHO05D010079 8.4e-48 194.5 190 56.3
Lj2g0009988 Lotus japonicus HOM05D008003 ORTHO05D010079 8.4e-48 194.5 176 59.7
MD03G1292000 Malus domestica HOM05D008003 ORTHO05D010079 1.4e-47 193.7 204 57.4
Migut.N02677 Erythranthe guttata HOM05D000499 ORTHO05D007471 1.9e-47 193.4 196 56.1
AUR62040074 Chenopodium quinoa HOM05D008003 ORTHO05D010079 5.4e-47 191.8 175 55.4
Lsat_1_v5_gn_1_19420 Lactuca sativa HOM05D008003 ORTHO05D010079 2.1e-46 189.9 184 53.8
SalBow1G6207 Salvia bowleyana HOM05D008003 ORTHO05D010079 3.5e-46 189.1 183 57.4
SalBow1G7493 Salvia bowleyana HOM05D008003 ORTHO05D010079 4.6e-46 188.7 183 57.4
Nitab4.5_0012105g0050 Nicotiana tabacum HOM05D008003 ORTHO05D010079 6.0e-46 188.3 181 59.1
EL10As22g24222 Beta vulgaris HOM05D008003 ORTHO05D010079 8.7e-45 184.5 183 54.6
Solyc04g008080.1 Solanum lycopersicum HOM05D008003 ORTHO05D010079 5.6e-44 181.8 191 53.4
CAN.G74.23 Capsicum annuum HOM05D008003 ORTHO05D010079 7.4e-44 181.4 192 52.1
ECA247G3275 Erigeron canadensis HOM05D000264 ORTHO05D000152 7.4e-44 181.4 167 56.9
VMungo0251G2996 Vigna mungo HOM05D008003 ORTHO05D010079 1.8e-42 176.8 190 51.1
CsaV3_7G022920 Cucumis sativus L. HOM05D007284 ORTHO05D009303 4.0e-42 175.6 160 53.1
Phvul.002G325400 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 1.3e-40 170.6 186 50.0
Phvul.002G325500 Phaseolus vulgaris HOM05D008003 ORTHO05D010079 2.9e-40 169.5 185 49.2
Carub.0008s0637 Capsella rubella HOM05D008003 ORTHO05D010079 5.5e-39 165.2 197 48.7
THA.LOC104803393 Tarenaya hassleriana HOM05D008003 ORTHO05D010079 9.3e-39 164.5 179 53.1
AL8G18550 Arabidopsis lyrata HOM05D008003 ORTHO05D010079 2.1e-38 163.3 202 47.5
AT5G42655 Arabidopsis thaliana HOM05D008003 ORTHO05D010079 1.3e-37 160.6 200 48.0
ATR0733G062 Amborella trichopoda HOM05D008003 ORTHO05D010079 3.9e-37 159.1 181 49.7
arahy.Tifrunner.gnm1.ann1.M7IFVU Arachis hypogaea HOM05D008003 ORTHO05D010079 8.7e-37 157.9 209 48.8
CARHR181570 Cardamine hirsuta HOM05D000499 ORTHO05D007471 5.6e-36 155.2 197 46.7
Thhalv10019186m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 2.4e-34 149.8 197 45.7
Sp2g07120 Schrenkiella parvula HOM05D008003 ORTHO05D010079 2.4e-34 149.8 200 46.5
BcaC03g16515 Brassica carinata HOM05D008003 ORTHO05D010079 5.3e-34 148.7 198 46.5
A02p27430 Brassica napus HOM05D008003 ORTHO05D010079 5.3e-34 148.7 198 46.5
C02p43340 Brassica napus HOM05D008003 ORTHO05D010079 5.3e-34 148.7 198 46.5
BolC2t10386H Brassica oleracea HOM05D008003 ORTHO05D010079 5.3e-34 148.7 198 46.5
BraA02t07771Z Brassica rapa HOM05D008003 ORTHO05D010079 5.3e-34 148.7 198 46.5
BcaB07g30606 Brassica carinata HOM05D008003 ORTHO05D010079 2.9e-32 142.9 197 43.7
PGSC0003DMG400029513 Solanum tuberosum HOM05D005814 ORTHO05D006821 1.9e-31 140.2 137 53.3
SEGI_14506 Sequoiadendron giganteum HOM05D008003 ORTHO05D010079 1.1e-28 131.0 191 43.5
Ah.05g169480 Amaranthus hybridus HOM05D008003 ORTHO05D010079 1.8e-26 123.6 188 41.0
Thhalv10003357m.g Eutrema salsugineum HOM05D008003 ORTHO05D010079 5.9e-25 118.6 113 54.0
Zm00001eb056600 Zea mays HOM05D008003 ORTHO05D010079 2.2e-16 90.1 173 37.0
AUR62036507 Chenopodium quinoa HOM05D000013 ORTHO05D000011 1.3e-11 74.3 62 59.7
SalBow1G2735 Salvia bowleyana HOM05D001508 ORTHO05D001381 3.4e-09 66.2 107 33.6
SalBow1G6296 Salvia bowleyana HOM05D001508 ORTHO05D001381 3.4e-09 66.2 107 33.6
FAN13G3277 Fragaria x ananassa HOM05D001508 ORTHO05D001381 1.0e-08 64.7 118 28.8
Cfa010556 Carpinus fangiana HOM05D058412 ORTHO05D010079 1.7e-08 63.9 40 77.5
FAN13G0477 Fragaria x ananassa HOM05D001508 ORTHO05D001381 3.8e-08 62.8 116 29.3
Oeu008838.1 Olea europaea HOM05D001508 ORTHO05D001381 8.5e-08 61.6 107 31.8
SEGI_27732 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 8.5e-08 61.6 109 34.9
Mapoly0099s0036 Marchantia polymorpha HOM05D000180 ORTHO05D010079 1.1e-07 61.2 86 38.4
COL.COLO4_21756 Corchorus olitorius HOM05D001508 ORTHO05D001381 1.4e-07 60.8 110 30.0
RcHm_v2.0_Chr7g0195991 Rosa chinensis HOM05D001508 ORTHO05D001381 1.4e-07 60.8 107 29.9
FvH4_5g03720 Fragaria vesca HOM05D001508 ORTHO05D001381 1.9e-07 60.5 107 29.9
FvH4_6g42490 Fragaria vesca HOM05D000180 ORTHO05D000099 3.2e-07 59.7 96 33.3
FAN14G0740 Fragaria x ananassa HOM05D000180 ORTHO05D000099 3.2e-07 59.7 96 33.3
Mapoly0070s0018 Marchantia polymorpha HOM05D001508 ORTHO05D000099 3.2e-07 59.7 86 39.5
Nn7g36448 Nelumbo nucifera HOM05D000180 ORTHO05D000099 3.2e-07 59.7 108 35.2
TWI15G0614 Tripterygium wilfordii HOM05D001508 ORTHO05D001381 3.2e-07 59.7 107 31.8
Lj9C645T25 Lonicera japonica HOM05D000180 ORTHO05D000099 4.2e-07 59.3 109 34.9
MSTRG.18525 Avicennia marina HOM05D000180 ORTHO05D000099 7.2e-07 58.5 87 37.9
FvH4_5g03711 Fragaria vesca HOM05D001508 ORTHO05D001381 7.2e-07 58.5 180 24.4
Oeu063047.1 Olea europaea HOM05D001508 ORTHO05D001381 7.2e-07 58.5 107 29.0
ATR0810G295 Amborella trichopoda HOM05D000180 ORTHO05D000099 9.4e-07 58.2 79 39.2
EL10Ac3g06867 Beta vulgaris HOM05D000180 ORTHO05D000099 9.4e-07 58.2 106 37.7
ECA240G2666 Erigeron canadensis HOM05D000147 ORTHO05D002016 9.4e-07 58.2 160 23.1
Eucgr.D01787 Eucalyptus grandis HOM05D001508 ORTHO05D001381 9.4e-07 58.2 107 29.0
Eucgr.L01975 Eucalyptus grandis HOM05D001508 ORTHO05D001381 9.4e-07 58.2 107 29.0
TAR375G0523 Trochodendron aralioides HOM05D001508 ORTHO05D001381 9.4e-07 58.2 107 29.0
CSS0008829 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 1.2e-06 57.8 86 34.9
CSS0046463 Camellia sinensis var. sinensis HOM05D000180 ORTHO05D000099 1.2e-06 57.8 86 34.9
Eucgr.E00812 Eucalyptus grandis HOM05D001508 ORTHO05D001381 1.2e-06 57.8 108 29.6
FAN08G3175 Fragaria x ananassa HOM05D001508 ORTHO05D001381 1.2e-06 57.8 107 29.9
Manes.04G164400 Manihot esculenta HOM05D000180 ORTHO05D000099 1.2e-06 57.8 98 36.7
Oeu029521.1 Olea europaea HOM05D001508 ORTHO05D001381 1.2e-06 57.8 107 29.9
RcHm_v2.0_Chr7g0196001 Rosa chinensis HOM05D001508 ORTHO05D001381 1.2e-06 57.8 107 28.0
CANSAT21G1649 Cannabis sativa HOM05D001508 ORTHO05D001381 1.6e-06 57.4 107 28.0
CANSAT21G2306 Cannabis sativa HOM05D001508 ORTHO05D001381 1.6e-06 57.4 174 23.0
DCAR_019269 Daucus carota HOM05D000201 ORTHO05D000490 1.6e-06 57.4 100 35.0
Prupe.5G111400 Prunus persica HOM05D001508 ORTHO05D001381 1.6e-06 57.4 107 29.0
RcHm_v2.0_Chr3g0480301 Rosa chinensis HOM05D001508 ORTHO05D001381 1.6e-06 57.4 107 29.9
CAN.G532.64 Capsicum annuum HOM05D001508 ORTHO05D001381 2.1e-06 57.0 106 28.3
FAN06G3656 Fragaria x ananassa HOM05D000970 ORTHO05D000788 2.1e-06 57.0 96 34.4
Lj1C1154T4 Lonicera japonica HOM05D001508 ORTHO05D001381 2.1e-06 57.0 106 28.3
Lj8C126T7 Lonicera japonica HOM05D000180 ORTHO05D000099 2.1e-06 57.0 81 39.5
PSO541G4063 Papaver somniferum HOM05D001508 ORTHO05D001381 2.1e-06 57.0 110 29.1
Phvul.005G032400 Phaseolus vulgaris HOM05D000180 ORTHO05D000099 2.1e-06 57.0 90 34.4
TAR381G1448 Trochodendron aralioides HOM05D000180 ORTHO05D000099 2.1e-06 57.0 76 39.5
CANSAT78G0196 Cannabis sativa HOM05D000970 ORTHO05D000788 2.7e-06 56.6 128 29.7
Cc07_g19920 Coffea canephora HOM05D001508 ORTHO05D001381 2.7e-06 56.6 83 32.5
Dinv05410 Davidia involucrata HOM05D000180 ORTHO05D000099 2.7e-06 56.6 80 37.5
FvH4_7g21010 Fragaria vesca HOM05D000970 ORTHO05D000788 2.7e-06 56.6 96 34.4
FAN09G1602 Fragaria x ananassa HOM05D000180 ORTHO05D000099 2.7e-06 56.6 80 35.0
FAN10G3772 Fragaria x ananassa HOM05D000970 ORTHO05D000788 2.7e-06 56.6 96 34.4
Peaxi162Scf00769g00038 Petunia axillaris HOM05D000180 ORTHO05D000099 2.7e-06 56.6 106 35.8
FAN02G4293 Fragaria x ananassa HOM05D000180 ORTHO05D000099 3.6e-06 56.2 80 35.0
FAN04G1541 Fragaria x ananassa HOM05D001508 ORTHO05D001381 3.6e-06 56.2 88 33.0
FAN18G2213 Fragaria x ananassa HOM05D001508 ORTHO05D001381 3.6e-06 56.2 88 33.0
Glyma.11G144000 Glycine max HOM05D000970 ORTHO05D000788 3.6e-06 56.2 99 35.4
Glyma.11G144200 Glycine max HOM05D000970 ORTHO05D000788 3.6e-06 56.2 99 35.4
Lsat_1_v5_gn_6_84640 Lactuca sativa HOM05D001508 ORTHO05D001381 3.6e-06 56.2 149 24.2
PSO541G1182 Papaver somniferum HOM05D000180 ORTHO05D000099 3.6e-06 56.2 132 30.3
Aa31LG6G6920 Aethionema arabicum HOM05D001508 ORTHO05D001381 4.7e-06 55.8 109 30.3
ATR0810G002 Amborella trichopoda HOM05D000180 ORTHO05D000099 4.7e-06 55.8 91 37.4
CiPaw.05G078800 Carya illinoinensis HOM05D000180 ORTHO05D000099 4.7e-06 55.8 85 35.3
Cc02_g29580 Coffea canephora HOM05D000180 ORTHO05D000099 4.7e-06 55.8 92 33.7
Mapoly0009s0065 Marchantia polymorpha HOM05D000180 ORTHO05D000099 4.7e-06 55.8 95 35.8
Os11g0180000 Oryza sativa ssp. japonica HOM05D000180 ORTHO05D000099 4.7e-06 55.8 96 35.4
PSO675G5682 Papaver somniferum HOM05D000180 ORTHO05D000099 4.7e-06 55.8 132 30.3
Rhsim07G0085900 Rhododendron simsii HOM05D001508 ORTHO05D001381 4.7e-06 55.8 106 27.4
AL7G29670 Arabidopsis lyrata HOM05D001508 ORTHO05D001381 6.1e-06 55.5 109 30.3
BcaB08g34588 Brassica carinata HOM05D001508 ORTHO05D001381 6.1e-06 55.5 85 30.6
Cfa005210 Carpinus fangiana HOM05D000180 ORTHO05D000099 6.1e-06 55.5 106 32.1
DCAR_019759 Daucus carota HOM05D000180 ORTHO05D000099 6.1e-06 55.5 106 30.2
Dinv05412 Davidia involucrata HOM05D000180 ORTHO05D000099 6.1e-06 55.5 80 37.5
Eucgr.A02220 Eucalyptus grandis HOM05D000180 ORTHO05D000099 6.1e-06 55.5 84 38.1
Eucgr.J02090 Eucalyptus grandis HOM05D000970 ORTHO05D000788 6.1e-06 55.5 91 35.2
Lj2C174T17 Lonicera japonica HOM05D001508 ORTHO05D001381 6.1e-06 55.5 106 27.4
Mapoly0117s0014 Marchantia polymorpha HOM05D014630 ORTHO05D019289 6.1e-06 55.5 84 36.9
Peaxi162Scf00986g00226 Petunia axillaris HOM05D000970 ORTHO05D000788 6.1e-06 55.5 108 33.3
Potri.008G061400 Populus trichocarpa HOM05D000180 ORTHO05D000099 6.1e-06 55.5 84 40.5
SEGI_34719 Sequoiadendron giganteum HOM05D000180 ORTHO05D000099 6.1e-06 55.5 89 39.3
Actinidia37249 Actinidia chinensis HOM05D000970 ORTHO05D000788 7.9e-06 55.1 105 31.4
COL.COLO4_21757 Corchorus olitorius HOM05D001508 ORTHO05D001381 7.9e-06 55.1 109 31.2
Eucgr.E00813 Eucalyptus grandis HOM05D001508 ORTHO05D001381 7.9e-06 55.1 108 30.6
FvH4_6g42510 Fragaria vesca HOM05D000180 ORTHO05D000099 7.9e-06 55.1 80 32.5
FAN01G1473 Fragaria x ananassa HOM05D000970 ORTHO05D000788 7.9e-06 55.1 96 33.3
FAN14G5554 Fragaria x ananassa HOM05D000180 ORTHO05D000099 7.9e-06 55.1 80 32.5
Mapoly0154s0011 Marchantia polymorpha HOM05D029457 ORTHO05D048774 7.9e-06 55.1 103 35.0
Potri.001G096560 Populus trichocarpa HOM05D001508 ORTHO05D001381 7.9e-06 55.1 107 27.1
Potri.013G142401 Populus trichocarpa HOM05D001508 ORTHO05D001381 7.9e-06 55.1 107 27.1
PGSC0003DMG400015556 Solanum tuberosum HOM05D000970 ORTHO05D000788 7.9e-06 55.1 107 30.8


User provided reference genes

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