Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 0.0e+00 2750.7 1362 100.0
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 0.0e+00 2353.6 1406 85.3
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 0.0e+00 1529.2 1392 58.7
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 0.0e+00 1374.8 1388 53.7
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 0.0e+00 1296.2 1403 50.6
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 0.0e+00 1285.8 1418 49.6
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 0.0e+00 1279.6 1385 49.5
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 0.0e+00 1258.4 1390 49.8
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 0.0e+00 1242.6 1396 49.1
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 0.0e+00 1233.0 1379 49.1
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 0.0e+00 1219.5 1386 49.7
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 0.0e+00 1211.8 1396 48.8
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 0.0e+00 1200.7 1470 46.5
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 0.0e+00 1181.0 1405 47.9
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 0.0e+00 1180.6 1397 48.0
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 0.0e+00 1171.0 1393 47.3
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 0.0e+00 1134.0 1426 46.5
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 0.0e+00 1127.5 1387 47.8
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 0.0e+00 1115.9 1257 50.8
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 0.0e+00 1109.0 1402 45.6
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 0.0e+00 1087.0 1410 44.9
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 8.4e-311 1070.8 1403 45.2
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 2.7e-301 1039.3 1338 45.7
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 1.0e-300 1037.3 1415 43.5
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 2.4e-297 1026.2 1385 44.2
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 6.2e-290 1001.5 1401 41.8
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 2.1e-285 986.5 1392 42.3
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 9.6e-283 977.6 1381 43.8
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 3.6e-282 975.7 1405 41.6
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 4.0e-281 972.2 1416 42.8
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 9.0e-281 971.1 1381 43.8
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 5.4e-278 961.8 1348 41.8
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 8.7e-276 954.5 1382 42.2
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 1.2e-269 934.1 1398 41.9
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 4.6e-269 932.2 1341 42.1
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 3.0e-268 929.5 1386 41.6
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 1.6e-266 923.7 1397 41.4
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 6.2e-266 921.8 1398 41.0
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 6.2e-266 921.8 1380 40.4
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 2.0e-264 916.8 1381 42.3
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 1.0e-260 904.4 1398 41.2
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 8.7e-260 901.4 1382 39.5
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 1.1e-259 901.0 1415 41.7
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 3.1e-257 892.9 1400 40.1
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 1.0e-255 887.9 1422 38.7
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 5.0e-255 885.6 1397 39.9
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 1.5e-248 864.0 1221 43.3
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 2.2e-247 860.1 1387 40.0
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 2.7e-245 853.2 1381 39.3
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 6.1e-245 852.0 1405 39.3
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 2.2e-242 843.6 1386 37.6
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 3.7e-242 842.8 1384 39.0
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 8.2e-242 841.6 1373 39.1
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 5.3e-241 839.0 1378 37.4
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 1.5e-240 837.4 1374 39.5
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 3.8e-239 832.8 1361 38.8
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 2.5e-238 830.1 1357 38.8
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 9.4e-238 828.2 1370 39.1
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 2.7e-237 826.6 1386 38.5
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 3.6e-237 826.2 1358 39.0
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 1.4e-236 824.3 1361 38.7
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 6.7e-236 822.0 1369 38.6
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 1.8e-233 813.9 1365 38.5
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 2.2e-226 790.4 1383 37.0
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 1.6e-221 774.2 1165 40.9
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 1.8e-220 770.8 1392 37.2
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 8.8e-220 768.5 1372 35.7
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 1.5e-219 767.7 1379 35.8
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 1.5e-214 751.1 1160 39.7
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 1.9e-214 750.7 1405 37.8
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 3.3e-214 750.0 1393 36.8
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.6e-213 747.7 1191 38.4
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 1.0e-212 745.0 1023 44.0
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 1.1e-206 724.9 834 48.0
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 5.4e-201 706.1 1292 35.7
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 2.3e-199 700.7 1222 39.0
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 1.5e-190 671.4 1487 33.8
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 3.3e-190 670.2 1414 34.4
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 1.6e-189 667.9 1093 39.0
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 1.5e-187 661.4 966 41.2
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 4.4e-187 659.8 1514 32.3
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 8.1e-165 585.9 948 38.1
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 1.1e-150 538.9 1374 30.7
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 7.9e-144 516.2 1391 31.1
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 6.7e-143 513.1 1390 30.2
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 2.3e-127 461.5 846 37.5
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 2.9e-122 444.5 636 40.3
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 6.3e-117 426.8 405 52.3
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 1.5e-113 415.6 402 55.0
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.1e-112 411.8 360 57.8
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 1.4e-111 409.1 464 48.3
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 1.3e-98 365.9 366 56.3
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 2.1e-96 358.6 434 44.9
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 6.4e-93 347.1 397 47.6
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.7e-85 322.4 276 57.2
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 2.3e-82 312.0 718 31.3
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 1.1e-81 309.7 394 45.9
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 4.9e-77 294.3 465 40.2
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.1e-73 283.1 260 54.2
GSVIVG01009571001 Vitis vinifera HOM05D006182 ORTHO05D007236 2.2e-69 268.9 273 56.4
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 3.7e-69 268.1 459 36.8
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 7.8e-67 260.4 366 42.9
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 3.9e-66 258.1 1337 24.2
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 1.6e-59 236.1 707 28.4
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 9.6e-57 226.9 212 53.3
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 3.2e-52 211.8 612 29.2
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 4.3e-49 201.4 686 28.4
Lalb_Chr04g0264181 Lupinus albus HOM05D006182 ORTHO05D007236 2.8e-48 198.7 274 44.9
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 4.8e-48 198.0 127 71.7
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 8.1e-48 197.2 409 35.5
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 3.4e-46 191.8 666 25.5
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 1.2e-43 183.3 569 27.1
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 2.5e-36 159.1 554 26.2
Ca_05108_v3 Cicer arietinum L. HOM05D006182 ORTHO05D007236 8.7e-34 150.6 172 49.4
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 1.9e-33 149.4 189 41.3
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 4.5e-30 138.3 270 38.5
Nitab4.5_0001611g0140 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.7e-29 136.3 204 40.2
Nitab4.5_0003237g0010 Nicotiana tabacum HOM05D006182 ORTHO05D007236 3.0e-26 125.6 190 38.9
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 2.5e-25 122.5 269 33.1
HPP92_010556 Vanilla planifolia HOM05D006182 ORTHO05D007236 2.4e-23 115.9 212 34.9
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 2.5e-20 105.9 235 35.3
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 7.9e-19 100.9 57 78.9
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 5.3e-15 88.2 51 76.5
SEGI_08955 Sequoiadendron giganteum HOM05D009451 ORTHO05D010233 6.5e-13 81.3 552 23.4
SEGI_19792 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.4e-12 80.1 252 29.0
AagrBONN_evm.TU.Sc2ySwM_368.213 Anthoceros agrestis HOM05D014773 ORTHO05D007236 2.0e-09 69.7 394 23.6
Psat2g076400 Pisum sativum HOM05D002050 ORTHO05D001949 2.6e-09 69.3 75 50.7
MBI16_g32432_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 1.6e-06 60.1 71 45.1
FAN18G1201 Fragaria x ananassa HOM05D010466 ORTHO05D007236 2.0e-06 59.7 84 35.7


User provided reference genes

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