Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 2.1e-67 258.8 128 100.0
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 2.0e-65 252.3 128 97.7
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 3.2e-63 245.0 124 93.5
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 5.4e-63 244.2 128 91.4
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 6.7e-61 237.3 126 88.9
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 1.1e-60 236.5 127 89.8
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 4.3e-60 234.6 127 89.0
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 1.6e-59 232.6 123 89.4
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 3.7e-59 231.5 126 88.1
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 6.2e-59 230.7 123 88.6
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 6.2e-59 230.7 123 89.4
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 6.2e-59 230.7 126 86.5
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 6.2e-59 230.7 123 88.6
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 8.1e-59 230.3 128 85.9
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 1.8e-58 229.2 126 86.5
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 1.8e-58 229.2 126 88.9
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 2.4e-58 228.8 126 85.7
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 2.4e-58 228.8 127 85.0
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 3.1e-58 228.4 126 84.1
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 4.0e-58 228.0 128 85.2
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 4.0e-58 228.0 126 86.5
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 4.0e-58 228.0 128 85.9
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 4.0e-58 228.0 126 85.7
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 4.0e-58 228.0 123 87.0
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 5.3e-58 227.6 126 85.7
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 5.3e-58 227.6 127 86.6
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 6.9e-58 227.3 126 88.1
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 6.9e-58 227.3 126 88.1
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 6.9e-58 227.3 126 88.1
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 6.9e-58 227.3 126 88.1
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 6.9e-58 227.3 126 88.1
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 9.0e-58 226.9 127 84.3
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 9.0e-58 226.9 123 87.0
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 1.5e-57 226.1 127 84.3
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 1.5e-57 226.1 127 84.3
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 1.5e-57 226.1 125 87.2
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 2.0e-57 225.7 126 84.1
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 2.6e-57 225.3 128 83.6
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 2.6e-57 225.3 125 88.0
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 2.6e-57 225.3 125 84.8
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 2.6e-57 225.3 123 85.4
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 2.6e-57 225.3 125 84.8
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.4e-57 224.9 125 84.0
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 4.5e-57 224.6 126 85.7
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 4.5e-57 224.6 125 84.0
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 4.5e-57 224.6 127 82.7
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 5.8e-57 224.2 127 83.5
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 5.8e-57 224.2 125 84.0
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 5.8e-57 224.2 121 86.8
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 5.8e-57 224.2 126 84.1
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 7.6e-57 223.8 128 82.8
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 7.6e-57 223.8 124 87.9
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 7.6e-57 223.8 112 97.3
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 1.0e-56 223.4 127 83.5
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 1.3e-56 223.0 128 83.6
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 1.3e-56 223.0 128 83.6
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 1.3e-56 223.0 128 83.6
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 1.3e-56 223.0 128 83.6
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 1.7e-56 222.6 127 83.5
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 1.7e-56 222.6 127 83.5
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 1.7e-56 222.6 124 85.5
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 1.7e-56 222.6 122 86.1
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 1.7e-56 222.6 112 96.4
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.7e-56 222.6 123 85.4
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 2.2e-56 222.2 126 83.3
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 2.2e-56 222.2 128 82.8
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 2.2e-56 222.2 126 82.5
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 2.2e-56 222.2 124 85.5
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 2.9e-56 221.9 126 82.5
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 2.9e-56 221.9 126 81.7
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 2.9e-56 221.9 125 84.0
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 4.9e-56 221.1 126 82.5
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 4.9e-56 221.1 124 87.1
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 4.9e-56 221.1 123 82.9
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 4.9e-56 221.1 123 82.9
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 4.9e-56 221.1 125 83.2
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 6.5e-56 220.7 123 83.7
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 6.5e-56 220.7 123 83.7
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 6.5e-56 220.7 128 82.8
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 6.5e-56 220.7 123 82.9
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 6.5e-56 220.7 123 82.9
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 6.5e-56 220.7 123 82.9
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 8.4e-56 220.3 125 86.4
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 8.4e-56 220.3 125 82.4
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 1.1e-55 219.9 126 80.2
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.1e-55 219.9 123 83.7
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 1.1e-55 219.9 123 82.1
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 1.1e-55 219.9 127 84.3
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 1.4e-55 219.5 126 80.2
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 1.4e-55 219.5 127 82.7
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 1.4e-55 219.5 121 83.5
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 1.9e-55 219.2 123 86.2
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.9e-55 219.2 123 83.7
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 1.9e-55 219.2 127 81.9
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.9e-55 219.2 128 81.2
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 2.5e-55 218.8 124 83.1
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 2.5e-55 218.8 123 82.1
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 3.2e-55 218.4 127 81.9
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 3.2e-55 218.4 125 80.8
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 4.2e-55 218.0 128 78.9
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 4.2e-55 218.0 126 80.2
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 5.5e-55 217.6 119 84.9
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 7.1e-55 217.2 126 79.4
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 7.1e-55 217.2 126 79.4
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 9.3e-55 216.9 123 80.5
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 9.3e-55 216.9 123 81.3
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 1.2e-54 216.5 126 81.0
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 1.6e-54 216.1 122 85.2
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 2.1e-54 215.7 127 81.1
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 3.5e-54 214.9 110 91.8
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 6.0e-54 214.2 128 79.7
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.0e-53 213.4 129 82.9
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 1.3e-53 213.0 126 77.8
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 1.3e-53 213.0 126 77.8
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 1.8e-53 212.6 126 76.2
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 2.3e-53 212.2 126 77.8
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 3.0e-53 211.8 121 81.0
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 3.9e-53 211.5 124 80.6
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 6.7e-53 210.7 124 81.5
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 8.7e-53 210.3 123 78.9
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 7.4e-52 207.2 115 83.5
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 1.6e-51 206.1 125 77.6
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 2.1e-51 205.7 112 86.6
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 2.1e-51 205.7 123 77.2
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 8.2e-51 203.8 125 76.0
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 4.1e-50 201.4 115 80.0
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 1.0e-48 196.8 118 81.4
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 1.3e-48 196.4 103 91.3
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 8.4e-48 193.7 126 74.6
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 1.1e-47 193.4 123 77.2
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 1.4e-47 193.0 107 85.0
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 1.9e-47 192.6 128 70.3
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 2.5e-47 192.2 107 84.1
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 5.5e-47 191.0 115 81.7
Duzib264G0014 Durio zibethinus HOM05D004438 ORTHO05D005256 8.7e-45 183.7 101 88.1
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 1.1e-44 183.3 107 83.2
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 2.5e-44 182.2 136 69.1
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 9.0e-42 173.7 108 80.6
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 1.5e-41 172.9 132 68.2
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 5.9e-41 171.0 98 82.7
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 1.9e-39 166.0 120 65.0
Oeu028520.2 Olea europaea HOM05D004438 ORTHO05D005256 2.5e-39 165.6 102 79.4
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 4.2e-39 164.9 86 87.2
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 2.1e-38 162.5 127 59.1
CSS0036861 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 1.4e-37 159.8 98 78.6
Rhsim08G0005900 Rhododendron simsii HOM05D004438 ORTHO05D005256 3.0e-37 158.7 102 74.5
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 3.0e-37 158.7 88 79.5
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 5.1e-37 157.9 123 58.5
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 1.4e-31 139.8 125 50.4
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 1.9e-31 139.4 122 57.4
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 4.2e-31 138.3 119 52.1
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.4e-29 133.3 67 92.5
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 1.3e-24 116.7 108 55.6
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 5.0e-24 114.8 57 89.5
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 2.5e-23 112.5 113 54.0
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 2.7e-22 109.0 121 43.8
CiPaw.04G091100 Carya illinoinensis HOM05D004438 ORTHO05D005256 4.7e-22 108.2 62 85.5
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 1.8e-21 106.3 81 58.0
MCO08G336 Micromonas commoda HOM05D004438 ORTHO05D005256 8.8e-21 104.0 113 49.6
ATR0049G041 Amborella trichopoda HOM05D004438 ORTHO05D005256 5.7e-20 101.3 122 41.8
CSS0036545 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 3.2e-15 85.5 46 84.8
Hund21738 Selenicereus undatus HOM05D004438 ORTHO05D005256 1.6e-09 66.6 35 88.6
SalBow2G3602 Salvia bowleyana HOM05D004438 ORTHO05D005256 5.0e-08 61.6 32 84.4
CBR_g51299 Chara braunii HOM05D004438 ORTHO05D005256 5.5e-07 58.2 35 74.3


User provided reference genes

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