Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G103700 Populus trichocarpa HOM05D006274 ORTHO05D007782 2.2e-100 369.0 193 100.0
Thecc.08G068200 Theobroma cacao HOM05D006274 ORTHO05D007782 3.2e-75 285.4 193 76.7
TWI56G1401 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 1.6e-74 283.1 193 75.6
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 4.6e-74 281.6 236 69.5
Duzib116G0317 Durio zibethinus HOM05D006274 ORTHO05D007782 3.9e-73 278.5 193 74.1
Haze_22342 Corylus avellana HOM05D006274 ORTHO05D007782 8.8e-73 277.3 196 76.5
Cfa013698 Carpinus fangiana HOM05D006274 ORTHO05D007782 4.3e-72 275.0 196 76.0
Ciclev10002605m.g Citrus clementina HOM05D006274 ORTHO05D007782 9.7e-72 273.9 193 78.2
Manes.18G061000 Manihot esculenta HOM05D006274 ORTHO05D007782 8.2e-71 270.8 194 74.2
SalBow6G3082 Salvia bowleyana HOM05D006274 ORTHO05D007782 3.1e-70 268.9 186 73.1
MSTRG.19530 Avicennia marina HOM05D006274 ORTHO05D007782 2.0e-69 266.2 186 73.1
PGR031G0701 Punica granatum HOM05D006274 ORTHO05D007782 2.0e-69 266.2 199 70.9
QL09p017221 Quercus lobata HOM05D006274 ORTHO05D007782 3.4e-69 265.4 193 75.1
TAR381G0542 Trochodendron aralioides HOM05D006274 ORTHO05D007782 4.5e-69 265.0 193 74.1
THA.LOC104814210 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 1.9e-67 259.6 195 72.3
MD08G1193500 Malus domestica HOM05D006274 ORTHO05D007782 5.5e-67 258.1 197 70.1
CSS0028463 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 1.6e-66 256.5 190 71.1
CiPaw.07G167900 Carya illinoinensis HOM05D006274 ORTHO05D007782 3.6e-66 255.4 196 70.4
SGA_v2.0_scaffold10G05208 Striga asiatica HOM05D006274 ORTHO05D007782 4.7e-66 255.0 186 70.4
Gohir.D06G032400 Gossypium hirsutum HOM05D006274 ORTHO05D007782 6.1e-66 254.6 193 69.4
Sed0009042 Sechium edule HOM05D006274 ORTHO05D007782 6.1e-66 254.6 194 72.2
Nn5g29933 Nelumbo nucifera HOM05D006274 ORTHO05D007782 7.9e-66 254.2 192 69.8
CSS0045542 Camellia sinensis var. sinensis HOM05D006274 ORTHO05D007782 1.4e-65 253.4 190 70.0
Oeu024592.1 Olea europaea HOM05D006274 ORTHO05D007782 1.4e-65 253.4 186 71.0
Actinidia19642 Actinidia chinensis HOM05D006274 ORTHO05D007782 1.8e-65 253.1 185 73.5
MD15G1382000 Malus domestica HOM05D006274 ORTHO05D007782 1.8e-65 253.1 197 68.0
BolC4t23114H Brassica oleracea HOM05D006274 ORTHO05D007782 2.3e-65 252.7 193 70.5
Cc10_g15630 Coffea canephora HOM05D006274 ORTHO05D007782 2.3e-65 252.7 187 70.6
Gorai.010G035700 Gossypium raimondii HOM05D006274 ORTHO05D007782 3.0e-65 252.3 193 68.9
C04p15430 Brassica napus HOM05D006274 ORTHO05D007782 5.1e-65 251.5 193 70.5
CsaV3_2G030110 Cucumis sativus L. HOM05D006274 ORTHO05D007782 8.8e-65 250.8 194 70.6
Dinv44839 Davidia involucrata HOM05D006274 ORTHO05D007782 1.1e-64 250.4 191 72.8
A05p11860 Brassica napus HOM05D006274 ORTHO05D007782 1.5e-64 250.0 193 69.4
Thhalv10017289m.g Eutrema salsugineum HOM05D006274 ORTHO05D007782 1.5e-64 250.0 193 71.0
Prupe.1G528000 Prunus persica HOM05D006274 ORTHO05D007782 2.6e-64 249.2 194 70.6
BcaC02g11449 Brassica carinata HOM05D006274 ORTHO05D007782 4.4e-64 248.4 187 70.1
Migut.J00587 Erythranthe guttata HOM05D006274 ORTHO05D007782 9.7e-64 247.3 186 69.9
BraA05t20127Z Brassica rapa HOM05D006274 ORTHO05D007782 1.7e-63 246.5 193 69.4
MBI02_g18284_MAGBIO Magnolia biondii HOM05D006274 ORTHO05D007782 2.2e-63 246.1 194 69.1
GSVIVG01009140001 Vitis vinifera HOM05D006274 ORTHO05D007782 2.2e-63 246.1 164 78.7
BcaB02g10587 Brassica carinata HOM05D006274 ORTHO05D007782 2.8e-63 245.7 193 68.9
Glyma.04G092700 Glycine max HOM05D006274 ORTHO05D007782 3.7e-63 245.4 191 69.1
Carub.0004s1538 Capsella rubella HOM05D006274 ORTHO05D007782 8.2e-63 244.2 191 68.6
Sc01g0001050 Simmondsia chinensis HOM05D006274 ORTHO05D007782 1.4e-62 243.4 193 65.8
Aa31LG9G13640 Aethionema arabicum HOM05D006274 ORTHO05D007782 2.4e-62 242.7 195 70.3
Glyma.06G094500 Glycine max HOM05D006274 ORTHO05D007782 4.1e-62 241.9 185 72.4
Hma1.2p1_0010F.1_g006970 Hydrangea macrophylla HOM05D006274 ORTHO05D007782 5.3e-62 241.5 185 71.9
AL4G29430 Arabidopsis lyrata HOM05D006274 ORTHO05D007782 1.2e-61 240.4 192 68.2
THA.LOC104820685 Tarenaya hassleriana HOM05D006274 ORTHO05D007782 2.0e-61 239.6 189 70.9
CARHR127760 Cardamine hirsuta HOM05D006274 ORTHO05D007782 2.6e-61 239.2 194 67.0
Dinv42635 Davidia involucrata HOM05D006274 ORTHO05D007782 2.6e-61 239.2 184 71.2
Sp4g16090 Schrenkiella parvula HOM05D006274 ORTHO05D007782 4.5e-61 238.4 193 67.9
Ca_22436_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 5.9e-61 238.0 196 68.4
AT2G33740 Arabidopsis thaliana HOM05D006274 ORTHO05D007782 7.7e-61 237.7 194 67.5
Solyc04g076050.4 Solanum lycopersicum HOM05D006274 ORTHO05D007782 7.7e-61 237.7 183 68.3
RcHm_v2.0_Chr7g0237451 Rosa chinensis HOM05D006274 ORTHO05D007782 1.7e-60 236.5 192 66.7
ClCG08G011520 Citrullus lanatus HOM05D006274 ORTHO05D007782 2.9e-60 235.7 218 62.4
Lj1g0015671 Lotus japonicus HOM05D006274 ORTHO05D007782 6.5e-60 234.6 195 67.7
Sopen00g007030 Solanum pennellii HOM05D006274 ORTHO05D007782 6.5e-60 234.6 184 67.4
Sopen00g007710 Solanum pennellii HOM05D006274 ORTHO05D007782 6.5e-60 234.6 184 67.4
PGSC0003DMG400012912 Solanum tuberosum HOM05D006274 ORTHO05D007782 6.5e-60 234.6 183 66.7
VMungo1309G0647 Vigna mungo HOM05D006274 ORTHO05D007782 6.5e-60 234.6 184 70.1
Phvul.009G143300 Phaseolus vulgaris HOM05D006274 ORTHO05D007782 7.2e-59 231.1 184 67.4
vmacro04670 Vaccinium macrocarpon HOM05D006274 ORTHO05D007782 7.2e-59 231.1 202 63.4
Hund27007 Selenicereus undatus HOM05D006274 ORTHO05D007782 2.1e-58 229.6 184 66.3
EL10Ac1g01111 Beta vulgaris HOM05D006274 ORTHO05D007782 2.7e-58 229.2 184 67.4
TPR.G26025 Trifolium pratense HOM05D006274 ORTHO05D007782 6.1e-58 228.0 184 67.9
Lsat_1_v5_gn_9_74940 Lactuca sativa HOM05D006274 ORTHO05D007782 8.0e-58 227.6 183 67.8
Medtr3g100630 Medicago truncatula HOM05D006274 ORTHO05D007782 8.0e-58 227.6 181 69.6
Nitab4.5_0010618g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 1.0e-57 227.3 185 65.9
ECA232G3909 Erigeron canadensis HOM05D006274 ORTHO05D007782 1.4e-57 226.9 189 66.7
Lalb_Chr08g0242401 Lupinus albus HOM05D006274 ORTHO05D007782 1.8e-57 226.5 193 63.2
MELO3C011069.2 Cucumis melo HOM05D006274 ORTHO05D007782 8.8e-57 224.2 212 62.3
Cpa.g.sc309.7 Carica papaya HOM05D006274 ORTHO05D007782 2.6e-56 222.6 190 63.7
Eucgr.F02129 Eucalyptus grandis HOM05D006274 ORTHO05D007782 3.3e-56 222.2 182 64.8
FAN04G0860 Fragaria x ananassa HOM05D006274 ORTHO05D007782 9.7e-56 220.7 205 62.4
CDE10G0432 Ceratophyllum demersum HOM05D006274 ORTHO05D007782 3.7e-55 218.8 188 64.4
FvH4_5g35790 Fragaria vesca HOM05D006274 ORTHO05D007782 3.7e-55 218.8 200 61.0
HanXRQChr09g0249401 Helianthus annuus HOM05D006274 ORTHO05D007782 3.7e-55 218.8 186 67.7
PSO210G3104 Papaver somniferum HOM05D006274 ORTHO05D007782 8.2e-55 217.6 196 61.7
Gohir.A05G218200 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.1e-54 217.2 193 61.1
FAN18G0017 Fragaria x ananassa HOM05D006274 ORTHO05D007782 3.1e-54 215.7 200 60.5
Gorai.009G231100 Gossypium raimondii HOM05D006274 ORTHO05D007782 3.1e-54 215.7 193 61.1
PSO170G6492 Papaver somniferum HOM05D006274 ORTHO05D007782 3.1e-54 215.7 190 63.7
unitig_26.g9169 Utricularia gibba HOM05D006274 ORTHO05D007782 7.0e-54 214.5 183 62.8
Gohir.A06G032628 Gossypium hirsutum HOM05D006274 ORTHO05D007782 2.0e-53 213.0 184 64.1
Ca_15989_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 5.9e-53 211.5 166 70.5
Hund16871 Selenicereus undatus HOM05D006274 ORTHO05D007782 2.9e-52 209.1 188 63.3
Nn1g05513 Nelumbo nucifera HOM05D006274 ORTHO05D007782 1.5e-51 206.8 184 62.0
ATR0022G028 Amborella trichopoda HOM05D006274 ORTHO05D007782 2.7e-50 202.6 179 61.5
Aqoxy5G01327 Aquilegia oxysepala HOM05D006274 ORTHO05D007782 3.6e-50 202.2 177 61.6
TWI12G0161 Tripterygium wilfordii HOM05D006274 ORTHO05D007782 1.0e-49 200.7 131 77.9
Peaxi162Scf00281g00415 Petunia axillaris HOM05D006274 ORTHO05D007782 2.0e-48 196.4 181 61.3
Actinidia29612 Actinidia chinensis HOM05D006274 ORTHO05D007782 2.6e-48 196.1 173 64.2
arahy.Tifrunner.gnm1.ann1.44X20L Arachis hypogaea HOM05D006274 ORTHO05D007782 5.7e-48 194.9 167 69.5
Zm00001eb006540 Zea mays HOM05D006274 ORTHO05D007782 9.7e-48 194.1 173 60.7
Nitab4.5_0001507g0040 Nicotiana tabacum HOM05D006274 ORTHO05D007782 2.2e-47 193.0 183 57.9
arahy.Tifrunner.gnm1.ann1.SMA5HD Arachis hypogaea HOM05D006274 ORTHO05D007782 8.3e-47 191.0 167 68.3
AUR62019013 Chenopodium quinoa HOM05D006274 ORTHO05D007782 1.1e-46 190.7 113 81.4
Gohir.D05G223833 Gossypium hirsutum HOM05D006274 ORTHO05D007782 1.8e-46 189.9 193 56.5
AUR62027854 Chenopodium quinoa HOM05D006274 ORTHO05D007782 3.1e-46 189.1 113 79.6
Sopen00g004300 Solanum pennellii HOM05D006274 ORTHO05D007782 1.2e-45 187.2 112 80.4
Os10g0378300 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 1.6e-45 186.8 112 78.6
MSTRG.6044 Avicennia marina HOM05D006274 ORTHO05D007782 2.0e-45 186.4 113 80.5
DCAR_012863 Daucus carota HOM05D006274 ORTHO05D007782 2.0e-45 186.4 113 77.9
Os03g0186950 Oryza sativa ssp. japonica HOM05D006274 ORTHO05D007782 3.5e-45 185.7 173 60.1
CAN.G1658.2 Capsicum annuum HOM05D006274 ORTHO05D007782 9.4e-43 177.6 118 74.6
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 1.8e-41 173.3 160 57.5
CANSAT64G0910 Cannabis sativa HOM05D006274 ORTHO05D007782 9.8e-40 167.5 137 67.2
FAN13G2708 Fragaria x ananassa HOM05D006274 ORTHO05D007782 3.8e-36 155.6 92 78.3
FAN08G3216 Fragaria x ananassa HOM05D006274 ORTHO05D007782 3.3e-35 152.5 92 77.2
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 5.5e-35 151.8 88 81.8
Atru.chr13.1045 Acer truncatum HOM05D006274 ORTHO05D007782 1.6e-34 150.2 103 75.7
Sed0010188 Sechium edule HOM05D006274 ORTHO05D007782 6.1e-34 148.3 92 80.4
SMO119G0339 Selaginella moellendorffii HOM05D006274 ORTHO05D007782 1.5e-32 143.7 110 60.0
Mapoly0011s0077 Marchantia polymorpha HOM05D006274 ORTHO05D007782 1.3e-31 140.6 148 52.0
Psat5g045880 Pisum sativum HOM05D006274 ORTHO05D007782 1.7e-31 140.2 143 60.1
Rhsim07G0210300 Rhododendron simsii HOM05D006274 ORTHO05D007782 4.6e-29 132.1 70 88.6
Cre02.g082350 Chlamydomonas reinhardtii HOM05D006274 ORTHO05D007782 2.9e-28 129.4 97 62.9
CBR_g39263 Chara braunii HOM05D002374 ORTHO05D003594 3.9e-28 129.0 110 53.6
SEGI_33866 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 3.9e-28 129.0 107 56.1
SEGI_16140 Sequoiadendron giganteum HOM05D006274 ORTHO05D007782 1.1e-27 127.5 90 67.8
PRCOL_00002052 Prasinoderma coloniale HOM05D006274 ORTHO05D007782 4.3e-27 125.6 97 59.8
EL10Ac9g22466 Beta vulgaris HOM05D006274 ORTHO05D007782 1.2e-24 117.5 70 74.3
AagrBONN_evm.TU.Sc2ySwM_228.3755 Anthoceros agrestis HOM05D006274 ORTHO05D007782 3.7e-23 112.5 109 54.1
Pp3c21_2600 Physcomitrium patens HOM05D006274 ORTHO05D007782 1.9e-22 110.2 123 45.5
CBR_g7959 Chara braunii HOM05D006274 ORTHO05D007782 1.9e-19 100.1 92 56.5
Ca_28793_v3 Cicer arietinum L. HOM05D006274 ORTHO05D007782 4.4e-08 62.4 90 32.2


User provided reference genes

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