Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G103600 Populus trichocarpa HOM05D007660 ORTHO05D009442 1.8e-56 224.2 386 100.0
Dinv44841 Davidia involucrata HOM05D007660 ORTHO05D009442 9.4e-34 148.7 173 50.3
Ciclev10000867m.g Citrus clementina HOM05D007660 ORTHO05D009442 3.6e-33 146.7 173 80.3
Duzib168G2083 Durio zibethinus HOM05D007660 ORTHO05D009442 1.1e-31 141.7 172 80.2
Sabra02G0081200 Salix brachista HOM05D006274 ORTHO05D007782 1.5e-31 141.4 104 74.0
Cpa.g.sc309.5 Carica papaya HOM05D007660 ORTHO05D009442 2.6e-31 140.6 174 79.3
Migut.B01252 Erythranthe guttata HOM05D007660 ORTHO05D009442 2.6e-31 140.6 170 74.7
Thecc.09G257500 Theobroma cacao HOM05D007660 ORTHO05D009442 4.4e-31 139.8 172 80.2
MSTRG.2718 Avicennia marina HOM05D007660 ORTHO05D009442 5.7e-31 139.4 169 75.1
Gorai.001G131400 Gossypium raimondii HOM05D007660 ORTHO05D009442 9.7e-31 138.7 173 78.6
CSS0016503 Camellia sinensis var. sinensis HOM05D007660 ORTHO05D009442 1.3e-30 138.3 170 78.2
Peaxi162Scf00281g00043 Petunia axillaris HOM05D007660 ORTHO05D009442 3.7e-30 136.7 173 74.6
Nitab4.5_0001507g0030 Nicotiana tabacum HOM05D007660 ORTHO05D009442 4.8e-30 136.3 95 68.4
Cc10_g15650 Coffea canephora HOM05D007660 ORTHO05D009442 1.1e-29 135.2 171 67.8
Lsat_1_v5_gn_9_75000 Lactuca sativa HOM05D007660 ORTHO05D009442 1.1e-29 135.2 95 70.5
Atru.chr13.1043 Acer truncatum HOM05D007660 ORTHO05D009442 1.8e-29 134.4 171 75.4
Nitab4.5_0013728g0010 Nicotiana tabacum HOM05D007660 ORTHO05D009442 1.8e-29 134.4 95 67.4
QL09p017232 Quercus lobata HOM05D007660 ORTHO05D009442 1.8e-29 134.4 173 79.2
ECA232G0036 Erigeron canadensis HOM05D007660 ORTHO05D009442 2.4e-29 134.0 95 70.5
HanXRQChr09g0250871 Helianthus annuus HOM05D007660 ORTHO05D009442 2.4e-29 134.0 173 76.3
Manes.03G106200 Manihot esculenta HOM05D007660 ORTHO05D009442 2.4e-29 134.0 95 69.5
Rhsim06G0073800 Rhododendron simsii HOM05D007660 ORTHO05D009442 2.4e-29 134.0 169 78.1
PGSC0003DMG400012911 Solanum tuberosum HOM05D007660 ORTHO05D009442 3.1e-29 133.7 95 66.3
SalBow3G4457 Salvia bowleyana HOM05D007660 ORTHO05D009442 5.3e-29 132.9 169 73.4
CsaV3_3G047880 Cucumis sativus L. HOM05D007660 ORTHO05D009442 9.1e-29 132.1 171 76.0
Solyc04g076070.1 Solanum lycopersicum HOM05D007660 ORTHO05D009442 1.2e-28 131.7 95 65.3
Sopen00g004320 Solanum pennellii HOM05D007660 ORTHO05D009442 1.6e-28 131.3 95 65.3
Sopen00g006420 Solanum pennellii HOM05D007660 ORTHO05D009442 1.6e-28 131.3 95 65.3
Actinidia30813 Actinidia chinensis HOM05D007660 ORTHO05D009442 2.6e-28 130.6 170 80.0
COL.COLO4_24918 Corchorus olitorius HOM05D007660 ORTHO05D009442 2.6e-28 130.6 172 76.7
Cfa013697 Carpinus fangiana HOM05D007660 ORTHO05D009442 3.5e-28 130.2 173 69.4
FAN08G3071 Fragaria x ananassa HOM05D007660 ORTHO05D009442 3.5e-28 130.2 172 74.4
Sc23g0000600 Simmondsia chinensis HOM05D007660 ORTHO05D009442 3.5e-28 130.2 172 73.8
RcHm_v2.0_Chr4g0424581 Rosa chinensis HOM05D007660 ORTHO05D009442 5.9e-28 129.4 95 68.4
CAN.G1375.15 Capsicum annuum HOM05D007660 ORTHO05D009442 7.7e-28 129.0 172 74.4
Ca_15991_v3 Cicer arietinum L. HOM05D001657 ORTHO05D001557 7.7e-28 129.0 173 74.6
SGA_v2.0_scaffold126G33870 Striga asiatica HOM05D007660 ORTHO05D009442 1.0e-27 128.6 170 75.9
EL10Ac7g16170 Beta vulgaris HOM05D007660 ORTHO05D009442 1.3e-27 128.3 95 63.2
TAR376G0278 Trochodendron aralioides HOM05D007660 ORTHO05D009442 1.3e-27 128.3 172 75.0
Glyma.06G093000 Glycine max HOM05D001083 ORTHO05D006562 1.7e-27 127.9 173 71.1
Lj3P942T62 Lonicera japonica HOM05D007660 ORTHO05D009442 2.2e-27 127.5 171 75.4
Psat5g045960 Pisum sativum HOM05D007660 ORTHO05D009442 2.2e-27 127.5 173 72.8
Eucgr.A00716 Eucalyptus grandis HOM05D007660 ORTHO05D009442 2.9e-27 127.1 173 71.7
Nn5g29930 Nelumbo nucifera HOM05D007660 ORTHO05D009442 2.9e-27 127.1 169 74.6
FAN18G0914 Fragaria x ananassa HOM05D007660 ORTHO05D009442 3.8e-27 126.7 172 70.3
FAN13G3224 Fragaria x ananassa HOM05D007660 ORTHO05D009442 6.5e-27 125.9 172 68.0
Sed0003873 Sechium edule HOM05D007660 ORTHO05D009442 8.5e-27 125.6 173 74.0
TWI56G0560 Tripterygium wilfordii HOM05D007660 ORTHO05D009442 8.5e-27 125.6 96 65.6
AUR62020133 Chenopodium quinoa HOM05D007660 ORTHO05D009442 1.1e-26 125.2 95 61.1
Phvul.009G143500 Phaseolus vulgaris HOM05D007660 ORTHO05D009442 1.1e-26 125.2 173 71.7
Prupe.1G528200 Prunus persica HOM05D007660 ORTHO05D009442 1.1e-26 125.2 88 70.5
CANSAT80G0706 Cannabis sativa HOM05D007660 ORTHO05D009442 1.5e-26 124.8 95 64.2
AUR62001643 Chenopodium quinoa HOM05D007660 ORTHO05D009442 1.5e-26 124.8 170 73.5
DCAR_028951 Daucus carota HOM05D007660 ORTHO05D009442 1.9e-26 124.4 169 69.8
TPR.G26074 Trifolium pratense HOM05D007660 ORTHO05D009442 2.5e-26 124.0 173 72.8
ClCG11G014470 Citrullus lanatus HOM05D007660 ORTHO05D009442 3.2e-26 123.6 173 71.7
Haze_22339 Corylus avellana HOM05D007660 ORTHO05D009442 3.2e-26 123.6 173 67.1
VMungo1309G0569 Vigna mungo HOM05D007660 ORTHO05D009442 3.2e-26 123.6 172 71.5
Aqoxy6G01459 Aquilegia oxysepala HOM05D007660 ORTHO05D009442 5.5e-26 122.9 95 64.2
FAN04G1497 Fragaria x ananassa HOM05D007660 ORTHO05D009442 9.4e-26 122.1 92 66.3
Medtr3g100600 Medicago truncatula HOM05D007660 ORTHO05D009442 1.6e-25 121.3 173 70.5
THA.LOC104806823 Tarenaya hassleriana HOM05D007660 ORTHO05D009442 1.6e-25 121.3 173 71.1
Lalb_Chr23g0270081 Lupinus albus HOM05D007660 ORTHO05D009442 8.8e-24 115.5 86 64.0
Aa31LG11G11130 Aethionema arabicum HOM05D007660 ORTHO05D009442 1.5e-23 114.8 95 58.9
AL6G29730 Arabidopsis lyrata HOM05D007660 ORTHO05D009442 2.6e-23 114.0 95 57.9
A02p04930 Brassica napus HOM05D007660 ORTHO05D009442 3.3e-23 113.6 95 57.9
CARHR194540 Cardamine hirsuta HOM05D007660 ORTHO05D009442 3.3e-23 113.6 95 60.0
BcaB05g23329 Brassica carinata HOM05D007660 ORTHO05D009442 7.5e-23 112.5 95 58.9
BraA02t05452Z Brassica rapa HOM05D007660 ORTHO05D009442 7.5e-23 112.5 95 56.8
AT5G18475 Arabidopsis thaliana HOM05D007660 ORTHO05D009442 3.7e-22 110.2 95 56.8
CDE04G0843 Ceratophyllum demersum HOM05D007660 ORTHO05D009442 3.7e-22 110.2 91 56.0
SHI48801 Sapria himalayana HOM05D007660 ORTHO05D009442 3.7e-22 110.2 96 61.5
SHI48939 Sapria himalayana HOM05D007660 ORTHO05D009442 3.7e-22 110.2 96 61.5
BcaC03g13602 Brassica carinata HOM05D007660 ORTHO05D009442 1.1e-21 108.6 95 55.8
C02p09910 Brassica napus HOM05D007660 ORTHO05D009442 1.1e-21 108.6 95 55.8
BolC2t06898H Brassica oleracea HOM05D007660 ORTHO05D009442 1.1e-21 108.6 95 55.8
Sp6g25850 Schrenkiella parvula HOM05D007660 ORTHO05D009442 1.4e-21 108.2 95 55.8
Thhalv10010303m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 3.1e-21 107.1 94 55.3
FvH4_5g35730 Fragaria vesca HOM05D007660 ORTHO05D009442 5.3e-21 106.3 78 66.7
Thhalv10001862m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 9.1e-21 105.5 95 53.7
Lj4g0004817 Lotus japonicus HOM05D007660 ORTHO05D009442 1.2e-20 105.1 82 62.2
Thhalv10001849m.g Eutrema salsugineum HOM05D007660 ORTHO05D009442 2.7e-20 104.0 173 35.3
PSO541G1025 Papaver somniferum HOM05D007660 ORTHO05D009442 1.5e-18 98.2 81 63.0
ATR0022G052 Amborella trichopoda HOM05D007660 ORTHO05D009442 5.5e-18 96.3 86 55.8
PSO675G1649 Papaver somniferum HOM05D007660 ORTHO05D009442 5.5e-18 96.3 80 62.5
PGR042G3094 Punica granatum HOM05D007660 ORTHO05D009442 7.2e-18 95.9 77 63.6
Gohir.D07G121900 Gossypium hirsutum HOM05D007660 ORTHO05D009442 1.5e-15 88.2 134 79.9
Gohir.A07G117500 Gossypium hirsutum HOM05D007660 ORTHO05D009442 9.8e-15 85.5 134 80.6
Dinv42632 Davidia involucrata HOM05D007660 ORTHO05D009442 1.3e-14 85.1 130 80.0
TAR376G0931 Trochodendron aralioides HOM05D007660 ORTHO05D009442 1.6e-12 78.2 143 74.1
Os02g0468500 Oryza sativa ssp. japonica HOM05D007660 ORTHO05D009442 7.5e-07 59.3 74 44.6


User provided reference genes

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