Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G101600 Populus trichocarpa HOM05D004728 ORTHO05D002375 2.4e-90 335.9 224 100.0
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 2.4e-58 229.6 188 72.9
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 2.0e-20 103.6 147 51.0
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 6.5e-19 98.6 159 50.9
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 1.1e-18 97.8 158 50.0
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 1.4e-18 97.4 157 52.2
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 4.2e-18 95.9 163 49.1
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 1.0e-16 91.3 129 47.3
CiPaw.15G045000 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.3e-16 90.9 193 43.5
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.8e-16 90.5 193 43.0
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 3.9e-16 89.4 160 50.6
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 3.9e-16 89.4 160 50.0
Duzib041G0412 Durio zibethinus HOM05D004728 ORTHO05D002375 1.5e-15 87.4 159 45.3
CiPaw.16G032400 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.9e-15 87.0 157 47.8
Duzib093G1766 Durio zibethinus HOM05D004728 ORTHO05D002375 9.7e-15 84.7 148 50.7
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 2.2e-14 83.6 196 41.8
Actinidia29600 Actinidia chinensis HOM05D004728 ORTHO05D002375 4.8e-14 82.4 130 52.3
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 4.8e-14 82.4 92 63.0
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.4e-13 80.9 94 58.5
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 1.8e-13 80.5 191 39.8
Thecc.08G100800 Theobroma cacao HOM05D004728 ORTHO05D002375 2.4e-13 80.1 132 53.0
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 3.1e-13 79.7 94 61.7
Potri.002G101500 Populus trichocarpa HOM05D004728 ORTHO05D002375 3.1e-13 79.7 158 41.8
Hund14099 Selenicereus undatus HOM05D004728 ORTHO05D002375 3.1e-13 79.7 94 61.7
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 4.1e-13 79.3 91 59.3
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.3e-13 79.0 195 40.5
MSTRG.1387 Avicennia marina HOM05D004728 ORTHO05D002375 6.9e-13 78.6 191 41.4
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 6.9e-13 78.6 195 40.0
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 9.0e-13 78.2 158 43.0
QL02p002250 Quercus lobata HOM05D004728 ORTHO05D002375 9.0e-13 78.2 161 47.2
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 9.0e-13 78.2 168 45.2
Sabra02G0079600 Salix brachista HOM05D004728 ORTHO05D002375 1.2e-12 77.8 158 43.7
QL02p002263 Quercus lobata HOM05D004728 ORTHO05D002375 1.5e-12 77.4 189 40.7
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 2.0e-12 77.0 166 41.6
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 2.0e-12 77.0 99 51.5
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 2.6e-12 76.6 114 39.5
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 4.5e-12 75.9 162 43.2
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 4.5e-12 75.9 168 39.9
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 5.9e-12 75.5 153 43.1
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.9e-12 75.5 195 39.5
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 5.9e-12 75.5 163 42.9
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 7.7e-12 75.1 152 40.1
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 2.9e-11 73.2 93 59.1
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 3.8e-11 72.8 130 49.2
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 5.0e-11 72.4 170 41.2
RcHm_v2.0_Chr7g0238181 Rosa chinensis HOM05D004728 ORTHO05D002375 5.0e-11 72.4 145 46.2
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 6.5e-11 72.0 153 41.8
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.1e-10 71.2 159 30.2
Eucgr.F00382 Eucalyptus grandis HOM05D004728 ORTHO05D002375 1.1e-10 71.2 164 47.0
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 1.1e-10 71.2 100 52.0
Rhsim07G0205400 Rhododendron simsii HOM05D004728 ORTHO05D002375 1.1e-10 71.2 187 36.9
Hma1.2p1_1180F.1_g264660 Hydrangea macrophylla HOM05D004728 ORTHO05D002375 1.4e-10 70.9 95 55.8
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 1.9e-10 70.5 94 55.3
MSTRG.1388 Avicennia marina HOM05D004728 ORTHO05D002375 2.5e-10 70.1 89 55.1
MSTRG.25340 Avicennia marina HOM05D004728 ORTHO05D002375 2.5e-10 70.1 152 38.8
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 2.5e-10 70.1 84 52.4
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 4.2e-10 69.3 90 57.8
Peaxi162Scf01184g00014 Petunia axillaris HOM05D004728 ORTHO05D002375 5.5e-10 68.9 148 42.6
FvH4_5g36280 Fragaria vesca HOM05D004728 ORTHO05D002375 7.2e-10 68.6 147 44.2
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 9.4e-10 68.2 93 36.6
FAN04G1034 Fragaria x ananassa HOM05D004728 ORTHO05D002375 9.4e-10 68.2 142 45.1
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 9.4e-10 68.2 94 53.2
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 1.2e-09 67.8 90 54.4
FAN13G0425 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.6e-09 67.4 143 44.8
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 1.6e-09 67.4 111 31.5
Oeu045992.1 Olea europaea HOM05D004728 ORTHO05D002375 1.6e-09 67.4 169 37.9
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 3.6e-09 66.2 89 52.8
Hund26995 Selenicereus undatus HOM05D004728 ORTHO05D002375 3.6e-09 66.2 188 37.2
vmacro04704 Vaccinium macrocarpon HOM05D004728 ORTHO05D002375 3.6e-09 66.2 108 53.7
AUR62027821 Chenopodium quinoa HOM05D059013 ORTHO05D002375 4.6e-09 65.9 125 28.0
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 4.6e-09 65.9 113 47.8
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 6.1e-09 65.5 141 41.1
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 6.1e-09 65.5 157 30.6
MSTRG.1471 Avicennia marina HOM05D004728 ORTHO05D002375 7.9e-09 65.1 128 43.0
Gohir.A05G223000 Gossypium hirsutum HOM05D004728 ORTHO05D002375 7.9e-09 65.1 162 40.1
DCAR_012878 Daucus carota HOM05D004728 ORTHO05D002375 1.0e-08 64.7 101 48.5
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 1.0e-08 64.7 89 48.3
MSTRG.25397 Avicennia marina HOM05D004728 ORTHO05D002375 1.4e-08 64.3 131 46.6
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 1.4e-08 64.3 89 47.2
SGA_v2.0_scaffold24G10482 Striga asiatica HOM05D004728 ORTHO05D002375 1.4e-08 64.3 182 35.7
unitig_0.g2111 Utricularia gibba HOM05D004728 ORTHO05D002375 1.4e-08 64.3 89 51.7
HanXRQChr17g0561041 Helianthus annuus HOM05D004728 ORTHO05D002375 1.8e-08 63.9 186 26.3
Lj4A728T43 Lonicera japonica HOM05D004728 ORTHO05D002375 1.8e-08 63.9 188 29.8
Gohir.D05G225700 Gossypium hirsutum HOM05D004728 ORTHO05D002375 2.3e-08 63.5 144 41.0
Lj4A728T44 Lonicera japonica HOM05D004728 ORTHO05D002375 2.3e-08 63.5 159 41.5
HanXRQChr09g0250741 Helianthus annuus HOM05D004728 ORTHO05D002375 3.9e-08 62.8 111 38.7
Prupe.6G194100 Prunus persica HOM05D004728 ORTHO05D002375 3.9e-08 62.8 103 50.5
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 5.1e-08 62.4 163 38.0
HanXRQChr05g0149651 Helianthus annuus HOM05D004728 ORTHO05D002375 5.1e-08 62.4 186 33.3
DCAR_012879 Daucus carota HOM05D004728 ORTHO05D002375 6.7e-08 62.0 152 41.4
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 6.7e-08 62.0 92 52.2
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 8.8e-08 61.6 90 44.4
Lj4A728G42 Lonicera japonica HOM05D004728 ORTHO05D002375 8.8e-08 61.6 197 28.4
PSO675G6306 Papaver somniferum HOM05D004728 ORTHO05D002375 8.8e-08 61.6 153 43.8
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 1.1e-07 61.2 89 48.3
FAN08G2352 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.1e-07 61.2 115 50.4
RcHm_v2.0_Chr7g0238201 Rosa chinensis HOM05D004728 ORTHO05D002375 1.1e-07 61.2 163 41.7
Hund23288 Selenicereus undatus HOM05D004728 ORTHO05D002375 1.1e-07 61.2 91 46.2
Actinidia10350 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.5e-07 60.8 197 36.5
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 1.5e-07 60.8 89 48.3
arahy.Tifrunner.gnm1.ann1.RDUL0C Arachis hypogaea HOM05D012119 ORTHO05D002375 1.5e-07 60.8 180 35.0
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 2.0e-07 60.5 169 34.9
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 2.0e-07 60.5 89 51.7
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 2.6e-07 60.1 92 46.7
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 3.3e-07 59.7 93 28.0
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 4.4e-07 59.3 90 38.9
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 4.4e-07 59.3 89 44.9
SGA_v2.0_scaffold48G17928 Striga asiatica HOM05D004728 ORTHO05D002375 4.4e-07 59.3 129 41.1
SGA_v2.0_scaffold52G18993 Striga asiatica HOM05D004728 ORTHO05D002375 4.4e-07 59.3 170 37.1
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 5.7e-07 58.9 126 30.2
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 5.7e-07 58.9 126 30.2
arahy.Tifrunner.gnm1.ann1.30DIRF Arachis hypogaea HOM05D012119 ORTHO05D002375 5.7e-07 58.9 144 38.2
arahy.Tifrunner.gnm1.ann1.9U5DT8 Arachis hypogaea HOM05D012119 ORTHO05D002375 5.7e-07 58.9 180 34.4
COL.COLO4_11997 Corchorus olitorius HOM05D004728 ORTHO05D002375 5.7e-07 58.9 154 44.8
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 5.7e-07 58.9 141 39.7
Migut.C01161 Erythranthe guttata HOM05D004728 ORTHO05D002375 5.7e-07 58.9 175 37.1
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 5.7e-07 58.9 89 50.6
Migut.B00577 Erythranthe guttata HOM05D007310 ORTHO05D002375 7.4e-07 58.5 90 31.1
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 7.4e-07 58.5 90 33.3
Nitab4.5_0007108g0040 Nicotiana tabacum HOM05D021150 ORTHO05D002375 9.7e-07 58.2 94 57.4
Prupe.6G194000 Prunus persica HOM05D004728 ORTHO05D002375 9.7e-07 58.2 82 53.7
EL10Ac1g01137 Beta vulgaris HOM05D004728 ORTHO05D002375 1.3e-06 57.8 112 30.4
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 1.3e-06 57.8 89 49.4
MSTRG.1389 Avicennia marina HOM05D004728 ORTHO05D002375 1.7e-06 57.4 73 58.9
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 1.7e-06 57.4 150 40.0
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 1.7e-06 57.4 135 37.8
arahy.Tifrunner.gnm1.ann1.69RQXC Arachis hypogaea HOM05D012119 ORTHO05D002375 2.2e-06 57.0 144 37.5
ClCG08G011340 Citrullus lanatus HOM05D039494 ORTHO05D002375 2.8e-06 56.6 130 42.3
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 2.8e-06 56.6 90 44.4
ECA247G0078 Erigeron canadensis HOM05D004728 ORTHO05D002375 4.8e-06 55.8 93 48.4
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 4.8e-06 55.8 187 35.3
PGSC0003DMG400030843 Solanum tuberosum HOM05D021150 ORTHO05D002375 4.8e-06 55.8 163 38.7
Lalb_Chr17g0344311 Lupinus albus HOM05D012119 ORTHO05D002375 6.3e-06 55.5 105 34.3
VMungo0647G1593 Vigna mungo HOM05D012119 ORTHO05D002375 6.3e-06 55.5 141 34.0
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 8.2e-06 55.1 157 36.9
Glyma.02G210000 Glycine max HOM05D012119 ORTHO05D002375 8.2e-06 55.1 77 49.4
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 8.2e-06 55.1 92 47.8


User provided reference genes

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