Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1999.2 1012 100.0
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1894.8 1012 94.8
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1615.1 1012 80.1
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1614.0 1011 80.3
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1613.2 1012 80.0
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1609.3 1007 79.4
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1606.3 1009 79.4
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1605.1 1025 78.6
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1600.5 1007 80.9
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1600.1 1012 79.4
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1597.4 1006 79.8
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1578.1 1009 78.5
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1561.6 1012 77.3
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1557.3 1018 77.5
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1550.4 1007 77.0
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1550.4 1008 77.5
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1548.1 1007 77.6
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1545.4 1007 76.0
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1545.0 965 80.0
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1545.0 1014 76.5
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1543.9 1032 75.2
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1537.7 1012 77.3
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1535.4 1020 75.1
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1531.5 1020 75.0
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1531.5 1019 75.6
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1530.4 1020 74.9
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1529.6 1032 74.7
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1529.6 1014 76.4
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1525.4 1020 75.9
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1523.5 1043 73.8
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1521.5 1012 76.5
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1519.2 1025 74.9
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1518.8 1014 75.4
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1517.3 1014 76.3
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1515.0 1025 74.6
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1513.8 1012 76.0
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1511.9 1012 75.8
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1505.7 1012 75.8
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1489.6 1015 74.7
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1488.8 1007 74.6
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1488.8 1054 71.9
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1488.0 1018 75.0
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1481.8 1012 73.7
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1481.1 1015 73.7
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1480.7 1020 74.6
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1479.9 1013 73.7
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1477.2 1016 73.7
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1476.8 1015 74.2
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1476.8 1016 73.9
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1475.7 1016 74.1
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1475.3 1012 73.0
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1474.1 1016 74.0
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1473.8 1015 74.1
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1473.4 1015 74.1
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1473.4 1015 74.1
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1472.6 1013 74.5
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1471.8 1015 74.0
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1471.4 1013 74.4
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1468.8 1023 73.1
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1464.5 1012 72.5
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1461.8 1014 73.1
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1460.3 1013 72.9
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1459.9 1014 72.3
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1455.3 1039 71.4
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1451.4 1032 71.5
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1450.6 1088 70.4
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1448.0 972 76.2
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1447.6 930 78.6
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1444.5 1012 72.4
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1440.6 1014 72.9
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1439.5 1048 70.2
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1439.5 1013 71.5
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1437.6 1012 72.8
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1431.8 972 75.4
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1427.5 985 72.8
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1426.0 1013 72.0
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1407.9 1029 70.8
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1399.8 1017 69.7
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1399.0 1012 72.0
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1396.3 1017 69.1
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1386.7 1026 68.3
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1386.3 1017 69.7
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1380.2 1014 69.3
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1369.0 1112 66.0
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1355.1 985 69.9
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1353.6 1007 68.4
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1352.0 1025 67.9
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1350.5 1007 68.9
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1345.1 1043 66.7
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1343.2 1014 68.8
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1338.9 1032 67.2
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1337.4 1016 67.9
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1321.6 980 69.0
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1311.2 1009 67.6
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1309.3 1016 65.6
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1302.3 1015 67.9
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1290.8 1147 60.3
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1290.8 971 69.3
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1286.9 1040 64.7
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1286.6 1033 64.9
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1283.9 1014 66.9
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1283.5 863 75.7
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1271.9 1016 65.9
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1270.8 921 71.0
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1269.2 1180 58.5
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1253.8 949 68.5
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1253.0 1015 64.6
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1250.0 1008 65.1
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1246.5 1042 63.1
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1242.6 1014 65.5
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1236.1 1005 62.7
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1226.1 1018 63.7
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1218.0 1011 62.0
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1209.1 1019 63.1
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1202.6 1010 61.0
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1157.9 864 69.4
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1154.4 991 62.5
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1148.3 809 73.3
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1138.6 904 66.7
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1130.5 948 61.6
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 6.2e-303 1044.3 947 58.7
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 1.6e-282 976.5 869 60.0
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 3.8e-276 955.3 625 78.1
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 3.2e-275 952.2 786 64.2
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 7.9e-274 947.6 1033 51.6
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 6.9e-270 934.5 629 75.7
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.1e-267 927.2 1033 48.9
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 2.9e-252 875.9 988 48.5
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 1.5e-248 863.6 648 70.4
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.6e-237 827.0 1021 46.3
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.5e-235 820.5 1019 46.6
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 8.8e-233 811.2 625 67.4
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 3.7e-223 779.2 1232 40.7
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 3.7e-215 752.7 888 45.0
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 5.1e-188 662.5 392 83.4
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.6e-178 630.9 360 84.2
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 3.3e-171 606.7 390 78.7
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 1.3e-156 558.1 422 70.6
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 8.2e-154 548.9 449 67.0
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 5.5e-150 536.2 531 55.2
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 9.4e-150 535.4 585 50.8
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 6.3e-106 389.8 238 81.1
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.3e-103 382.1 205 85.4
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 2.3e-103 381.3 258 75.2
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 6.1e-101 373.2 289 67.1
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 5.4e-89 333.6 240 70.0
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 4.0e-84 317.4 232 73.7
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 1.1e-81 309.3 848 29.8
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.1e-78 299.3 162 84.6
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 7.6e-75 286.6 150 88.7
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 4.0e-60 237.7 173 66.5
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 6.7e-55 220.3 267 52.8
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 7.4e-54 216.9 295 48.5
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 3.2e-49 201.4 148 74.3
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 5.5e-49 200.7 114 76.3
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 9.3e-49 199.9 500 31.0
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 7.2e-41 173.7 200 52.5
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.6e-40 172.6 155 56.1
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 3.0e-39 168.3 90 80.0
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 9.7e-38 163.3 105 79.0
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 3.6e-32 144.8 77 83.1
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 1.0e-31 143.3 79 78.5
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 5.7e-30 137.5 130 58.5
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 3.8e-26 124.8 79 74.7
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 7.9e-24 117.1 96 61.5
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 1.0e-23 116.7 129 51.2
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 2.8e-21 108.6 98 58.2
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 2.8e-21 108.6 98 58.2
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 1.4e-20 106.3 80 67.5
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 4.2e-17 94.7 103 57.3
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 2.6e-14 85.5 69 55.1
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 5.3e-12 77.8 80 57.5
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.6e-11 76.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 4.5e-11 74.7 50 70.0
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 1.9e-09 69.3 65 52.3
BcaB07g32539 Brassica carinata HOM05D001026 ORTHO05D092453 8.0e-08 63.9 72 51.4


User provided reference genes

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