Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G097700 Populus trichocarpa HOM05D002925 ORTHO05D003247 0.0e+00 1845.1 909 100.0
Sabra02G0076700 Salix brachista HOM05D002925 ORTHO05D003247 0.0e+00 1525.8 909 84.5
Potri.005G164100 Populus trichocarpa HOM05D002925 ORTHO05D003247 0.0e+00 1102.4 920 65.9
Manes.18G066500 Manihot esculenta HOM05D002925 ORTHO05D003247 6.2e-145 519.2 903 40.1
QL12p036977 Quercus lobata HOM05D002925 ORTHO05D003247 2.1e-100 371.3 996 30.4
Cfa013644 Carpinus fangiana HOM05D002925 ORTHO05D003247 3.2e-80 304.3 953 29.4
Thecc.08G105500 Theobroma cacao HOM05D002925 ORTHO05D003247 3.7e-73 280.8 884 28.7
GSVIVG01009040001 Vitis vinifera HOM05D002925 ORTHO05D003247 1.9e-72 278.5 968 28.3
Duzib116G0838 Durio zibethinus HOM05D002925 ORTHO05D003247 6.0e-71 273.5 880 28.6
Gohir.D01G114901 Gossypium hirsutum HOM05D002925 ORTHO05D003247 5.6e-69 266.9 969 27.7
Gorai.002G140700 Gossypium raimondii HOM05D002925 ORTHO05D003247 2.8e-68 264.6 968 27.3
Haze_22278 Corylus avellana HOM05D002925 ORTHO05D003247 2.9e-65 254.6 1038 27.3
TWI56G0820 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 9.2e-64 249.6 793 30.9
Gohir.A01G127000 Gossypium hirsutum HOM05D002925 ORTHO05D003247 1.2e-63 249.2 970 26.9
CiPaw.07G178900 Carya illinoinensis HOM05D002925 ORTHO05D003247 5.2e-59 233.8 922 27.4
Nitab4.5_0006616g0010 Nicotiana tabacum HOM05D002925 ORTHO05D003247 5.2e-51 207.2 918 25.5
Nitab4.5_0000232g0050 Nicotiana tabacum HOM05D002925 ORTHO05D003247 3.4e-50 204.5 911 25.7
COL.COLO4_16382 Corchorus olitorius HOM05D002925 ORTHO05D003247 3.2e-48 198.0 935 26.0
Dinv14338 Davidia involucrata HOM05D002925 ORTHO05D003247 1.0e-46 193.0 862 26.3
Prupe.1G518500 Prunus persica HOM05D002925 ORTHO05D003247 3.0e-46 191.4 316 38.0
Rhsim06G0081200 Rhododendron simsii HOM05D002925 ORTHO05D003247 9.0e-43 179.9 923 24.8
Actinidia29592 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.5e-42 179.1 915 25.1
RcHm_v2.0_Chr7g0238671 Rosa chinensis HOM05D002925 ORTHO05D003247 4.4e-42 177.6 628 27.9
PGSC0003DMG400006417 Solanum tuberosum HOM05D002925 ORTHO05D003247 9.9e-42 176.4 895 25.6
PGR031G1025 Punica granatum HOM05D002925 ORTHO05D003247 1.7e-41 175.6 994 23.6
Sopen04g029390 Solanum pennellii HOM05D002925 ORTHO05D003247 3.2e-40 171.4 904 24.8
CAN.G193.33 Capsicum annuum HOM05D002925 ORTHO05D000105 2.1e-39 168.7 888 24.3
vmacro21264 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 2.1e-39 168.7 867 25.4
FAN04G0469 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.7e-39 168.3 657 27.7
Ciclev10000205m.g Citrus clementina HOM05D002925 ORTHO05D003247 7.9e-39 166.8 204 43.6
FAN08G0410 Fragaria x ananassa HOM05D002925 ORTHO05D003247 3.3e-37 161.4 660 27.3
EL10Ac1g01207 Beta vulgaris HOM05D002925 ORTHO05D003247 6.2e-36 157.1 1110 22.3
Sc23g0000240 Simmondsia chinensis HOM05D002925 ORTHO05D003247 1.1e-35 156.4 977 22.9
AUR62027772 Chenopodium quinoa HOM05D002925 ORTHO05D003247 3.1e-35 154.8 1101 23.3
Hund26967 Selenicereus undatus HOM05D002925 ORTHO05D003247 1.5e-34 152.5 984 23.3
FAN13G2209 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.0e-34 152.1 665 26.3
FvH4_5g37120 Fragaria vesca HOM05D002925 ORTHO05D003247 2.6e-34 151.8 659 27.5
AUR62018927 Chenopodium quinoa HOM05D002925 ORTHO05D003247 4.5e-34 151.0 1098 22.6
Duzib093G1387 Durio zibethinus HOM05D002925 ORTHO05D003247 1.7e-33 149.1 556 28.8
MD08G1184300 Malus domestica HOM05D002925 ORTHO05D003247 3.8e-33 147.9 528 27.3
FAN18G3145 Fragaria x ananassa HOM05D002925 ORTHO05D003247 4.9e-33 147.5 655 26.9
Cc10_g07100 Coffea canephora HOM05D002925 ORTHO05D003247 2.4e-32 145.2 920 24.2
TAR076G0002 Trochodendron aralioides HOM05D002925 ORTHO05D003247 2.1e-31 142.1 916 23.1
RcHm_v2.0_Chr7g0243961 Rosa chinensis HOM05D002925 ORTHO05D003247 4.6e-31 141.0 376 30.9
Peaxi162Scf00392g00416 Petunia axillaris HOM05D002925 ORTHO05D003247 3.0e-30 138.3 860 24.3
Solyc04g074250.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 1.1e-29 136.3 855 24.6
GSVIVG01015726001 Vitis vinifera HOM05D002925 ORTHO05D003247 1.3e-28 132.9 216 34.7
MD15G1370800 Malus domestica HOM05D002925 ORTHO05D003247 1.8e-27 129.0 162 43.2
MD05G1043400 Malus domestica HOM05D002925 ORTHO05D003247 1.2e-26 126.3 212 34.4
Migut.C00133 Erythranthe guttata HOM05D002925 ORTHO05D003247 1.5e-26 125.9 902 23.3
Prupe.8G062800 Prunus persica HOM05D002925 ORTHO05D003247 3.4e-26 124.8 163 39.9
Atru.chr6.1160 Acer truncatum HOM05D002925 ORTHO05D003247 4.5e-26 124.4 123 45.5
CANSAT25G0699 Cannabis sativa HOM05D002925 ORTHO05D003247 4.5e-26 124.4 917 22.2
MSTRG.24975 Avicennia marina HOM05D002925 ORTHO05D003247 5.8e-26 124.0 964 21.5
FvH4_2g11920 Fragaria vesca HOM05D002925 ORTHO05D003247 5.8e-26 124.0 180 37.8
TAR625G1540 Trochodendron aralioides HOM05D002925 ORTHO05D003247 5.8e-26 124.0 223 35.0
FAN24G2963 Fragaria x ananassa HOM05D002925 ORTHO05D003247 7.6e-26 123.6 180 37.8
MBI02_g35745_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 1.0e-25 123.2 245 33.9
Cfa005642 Carpinus fangiana HOM05D002925 ORTHO05D003247 1.3e-25 122.9 209 33.5
Haze_10615 Corylus avellana HOM05D002925 ORTHO05D003247 1.3e-25 122.9 209 33.5
FAN15G3696 Fragaria x ananassa HOM05D002925 ORTHO05D003247 1.3e-25 122.9 180 37.2
MD10G1050700 Malus domestica HOM05D002925 ORTHO05D003247 2.2e-25 122.1 278 30.6
Duzib041G0069 Durio zibethinus HOM05D002925 ORTHO05D003247 3.8e-25 121.3 301 33.9
FAN20G1033 Fragaria x ananassa HOM05D002925 ORTHO05D003247 3.8e-25 121.3 178 37.6
Duzib041G0802 Durio zibethinus HOM05D002925 ORTHO05D003247 6.5e-25 120.6 265 34.3
Thecc.02G136300 Theobroma cacao HOM05D002925 ORTHO05D003247 6.5e-25 120.6 209 33.0
Lj6g0016748 Lotus japonicus HOM05D002925 ORTHO05D003247 8.4e-25 120.2 160 37.5
Manes.07G032600 Manihot esculenta HOM05D002925 ORTHO05D003247 1.4e-24 119.4 159 39.6
Ciclev10027826m.g Citrus clementina HOM05D002925 ORTHO05D003247 1.9e-24 119.0 235 33.6
RcHm_v2.0_Chr6g0271751 Rosa chinensis HOM05D002925 ORTHO05D003247 1.9e-24 119.0 326 29.1
Lalb_Chr18g0060531 Lupinus albus HOM05D002925 ORTHO05D003247 2.5e-24 118.6 173 36.4
Medtr2g009040 Medicago truncatula HOM05D002925 ORTHO05D003247 2.5e-24 118.6 213 32.4
CiPaw.06G154400 Carya illinoinensis HOM05D002925 ORTHO05D003247 3.2e-24 118.2 345 27.0
Dinv09022 Davidia involucrata HOM05D002925 ORTHO05D003247 4.2e-24 117.9 152 40.1
Lalb_Chr15g0090391 Lupinus albus HOM05D002925 ORTHO05D003247 7.1e-24 117.1 123 43.1
QL11p021491 Quercus lobata HOM05D002925 ORTHO05D003247 7.1e-24 117.1 253 31.2
Psat1g216280 Pisum sativum HOM05D002925 ORTHO05D003247 9.3e-24 116.7 213 31.5
Actinidia33130 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.2e-23 116.3 739 25.2
CSS0032438 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 1.2e-23 116.3 347 29.4
CSS0049612 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 1.2e-23 116.3 180 35.6
RcHm_v2.0_Chr6g0271621 Rosa chinensis HOM05D002925 ORTHO05D003247 1.2e-23 116.3 338 27.8
Ah.05g169890 Amaranthus hybridus HOM05D002925 ORTHO05D003247 2.1e-23 115.5 204 31.9
Nn1g05384 Nelumbo nucifera HOM05D002925 ORTHO05D003247 2.7e-23 115.2 958 22.3
Ca_00141_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 3.5e-23 114.8 149 38.9
Gohir.A03G174900 Gossypium hirsutum HOM05D002925 ORTHO05D003247 4.6e-23 114.4 209 31.6
Gorai.005G221500 Gossypium raimondii HOM05D002925 ORTHO05D003247 6.0e-23 114.0 209 31.6
Sabra16G0197500 Salix brachista HOM05D002925 ORTHO05D003247 6.0e-23 114.0 159 37.7
Gohir.D02G198200 Gossypium hirsutum HOM05D002925 ORTHO05D003247 7.9e-23 113.6 175 34.3
Phvul.006G205800 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 7.9e-23 113.6 124 41.9
Actinidia00276 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.0e-22 113.2 157 36.3
Eucgr.I02657 Eucalyptus grandis HOM05D002925 ORTHO05D003247 1.0e-22 113.2 308 30.5
Potri.001G312900 Populus trichocarpa HOM05D002925 ORTHO05D003247 1.0e-22 113.2 150 38.0
Dinv24181 Davidia involucrata HOM05D002925 ORTHO05D003247 1.8e-22 112.5 193 32.6
VMungo0540G1175 Vigna mungo HOM05D002925 ORTHO05D003247 1.8e-22 112.5 124 41.9
Cpa.g.sc42.38 Carica papaya HOM05D002925 ORTHO05D003247 2.3e-22 112.1 186 33.9
PSO447G0391 Papaver somniferum HOM05D002925 ORTHO05D003247 2.3e-22 112.1 210 32.9
Rhsim11G0137200 Rhododendron simsii HOM05D002925 ORTHO05D003247 3.9e-22 111.3 176 35.2
Hma1.2p1_0522F.1_g171730 Hydrangea macrophylla HOM05D002925 ORTHO05D003247 6.7e-22 110.5 158 37.3
vmacro01830 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 1.5e-21 109.4 155 36.8
Glyma.15G054200 Glycine max HOM05D002925 ORTHO05D003247 2.5e-21 108.6 124 42.7
PSO829G0001 Papaver somniferum HOM05D002925 ORTHO05D003247 2.5e-21 108.6 162 37.0
SGA_v2.0_scaffold83G26306 Striga asiatica HOM05D002925 ORTHO05D003247 2.5e-21 108.6 245 31.4
Glyma.08G178400 Glycine max HOM05D002925 ORTHO05D003247 7.4e-21 107.1 204 30.9
CDE10G0684 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 9.6e-21 106.7 264 31.8
Actinidia33129 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.6e-20 105.9 144 38.9
MBI02_g36599_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 3.7e-20 104.8 146 37.0
CDE10G0644 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 4.8e-20 104.4 243 32.1
Sc18g0006800 Simmondsia chinensis HOM05D002925 ORTHO05D003247 4.8e-20 104.4 88 48.9
Oeu036916.1 Olea europaea HOM05D002925 ORTHO05D003247 8.2e-20 103.6 165 37.0
arahy.Tifrunner.gnm1.ann1.M5A3LZ Arachis hypogaea HOM05D002925 ORTHO05D003247 1.1e-19 103.2 206 29.6
ATR0782G164 Amborella trichopoda HOM05D002925 ORTHO05D003247 1.4e-19 102.8 294 30.6
arahy.Tifrunner.gnm1.ann1.VGLF4N Arachis hypogaea HOM05D002925 ORTHO05D003247 1.4e-19 102.8 203 30.5
MSTRG.20293 Avicennia marina HOM05D002925 ORTHO05D003247 2.4e-19 102.1 240 30.0
Migut.B00599 Erythranthe guttata HOM05D002925 ORTHO05D003247 3.1e-19 101.7 229 31.9
Aqoxy6G00762 Aquilegia oxysepala HOM05D002925 ORTHO05D003247 2.6e-18 98.6 148 35.8
Peaxi162Scf00001g00002 Petunia axillaris HOM05D002925 ORTHO05D003247 4.5e-18 97.8 197 33.0
Cc02_g21380 Coffea canephora HOM05D002925 ORTHO05D003247 1.3e-17 96.3 83 48.2
MBI02_g05741_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 1.3e-17 96.3 347 27.1
Solyc01g105330.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 2.9e-17 95.1 87 48.3
Sopen01g047830 Solanum pennellii HOM05D002925 ORTHO05D003247 2.9e-17 95.1 87 48.3
SalBow5G0297 Salvia bowleyana HOM05D002925 ORTHO05D003247 5.0e-17 94.4 218 30.3
SalBow5G2582 Salvia bowleyana HOM05D002925 ORTHO05D003247 5.0e-17 94.4 218 30.3
Actinidia24000 Actinidia chinensis HOM05D002925 ORTHO05D003247 6.5e-17 94.0 159 32.7
TWI59G1115 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 8.4e-17 93.6 185 31.9
SGA_v2.0_scaffold74G24580 Striga asiatica HOM05D002925 ORTHO05D003247 4.2e-16 91.3 943 22.1
CSS0037093 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 7.2e-16 90.5 288 27.1
TPR.G25224 Trifolium pratense HOM05D002925 ORTHO05D003247 7.2e-16 90.5 218 27.1
Ah.01g022240 Amaranthus hybridus HOM05D002925 ORTHO05D003247 1.2e-15 89.7 175 30.9
ECA232G4158 Erigeron canadensis HOM05D002925 ORTHO05D003247 1.6e-15 89.4 933 20.9
SalBow7G1697 Salvia bowleyana HOM05D002925 ORTHO05D003247 2.7e-15 88.6 325 26.5
PSO210G6104 Papaver somniferum HOM05D002925 ORTHO05D003247 3.5e-15 88.2 74 50.0
SHI39627 Sapria himalayana HOM05D002925 ORTHO05D003247 1.3e-14 86.3 114 42.1
EL10Ac9g21492 Beta vulgaris HOM05D002925 ORTHO05D003247 8.7e-14 83.6 150 32.0
DCAR_008741 Daucus carota HOM05D002925 ORTHO05D003247 4.1e-11 74.7 231 28.6
SGA_v2.0_scaffold14G07129 Striga asiatica HOM05D002925 ORTHO05D003247 5.3e-11 74.3 245 26.1
unitig_22.g6065 Utricularia gibba HOM05D002925 ORTHO05D003247 2.6e-10 72.0 147 33.3
Nitab4.5_0000863g0180 Nicotiana tabacum HOM05D002925 ORTHO05D003247 1.0e-09 70.1 185 27.6
HPP92_011216 Vanilla planifolia HOM05D002925 ORTHO05D003247 1.3e-09 69.7 83 42.2
Actinidia00275 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.7e-09 69.3 140 32.1
Nitab4.5_0001619g0030 Nicotiana tabacum HOM05D002925 ORTHO05D003247 6.5e-09 67.4 146 28.8
AUR62013144 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.1e-08 66.6 180 23.9
PGSC0003DMG400012552 Solanum tuberosum HOM05D002925 ORTHO05D003247 1.9e-08 65.9 87 37.9
CAN.G523.55 Capsicum annuum HOM05D002925 ORTHO05D003247 2.5e-08 65.5 87 36.8
HanXRQChr05g0145421 Helianthus annuus HOM05D002925 ORTHO05D003247 4.2e-08 64.7 985 19.8
Zm00001eb033590 Zea mays HOM05D036816 ORTHO05D003247 5.5e-08 64.3 74 40.5
unitig_8.g5045 Utricularia gibba HOM05D002925 ORTHO05D003247 4.6e-07 61.2 237 26.6
AUR62010148 Chenopodium quinoa HOM05D002925 ORTHO05D003247 1.0e-06 60.1 181 22.7


User provided reference genes

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