Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.8e-132 476.1 263 100.0
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.6e-88 330.1 265 71.7
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 6.7e-84 314.7 285 65.6
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 4.6e-48 195.7 281 47.7
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 5.0e-47 192.2 315 42.5
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 1.1e-44 184.5 275 45.8
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.3e-44 183.3 275 45.1
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 6.8e-44 181.8 273 46.9
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 4.4e-43 179.1 273 46.2
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 4.4e-43 179.1 280 43.6
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 2.9e-42 176.4 274 43.1
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.2e-40 171.0 255 45.9
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.9e-39 166.0 264 41.3
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.5e-38 164.1 277 42.2
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.9e-38 163.7 264 47.0
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 9.5e-38 161.4 265 40.8
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.6e-37 159.5 263 47.1
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 6.2e-37 158.7 256 42.6
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 4.0e-36 156.0 267 46.8
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 8.9e-36 154.8 259 43.2
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 2.0e-35 153.7 280 44.6
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 2.0e-35 153.7 267 47.9
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.6e-35 153.3 267 47.6
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 3.4e-35 152.9 129 62.8
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 1.7e-34 150.6 264 43.2
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 1.7e-34 150.6 258 43.0
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.8e-34 149.4 133 64.7
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 4.9e-34 149.1 263 43.3
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 4.9e-34 149.1 272 47.1
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.1e-33 147.9 267 47.2
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.9e-33 147.1 123 65.9
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 3.2e-33 146.4 264 42.8
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 3.2e-33 146.4 136 60.3
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 4.1e-33 146.0 263 44.5
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 5.4e-33 145.6 291 40.2
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 5.4e-33 145.6 190 48.4
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 5.4e-33 145.6 190 48.4
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 9.2e-33 144.8 269 45.4
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 1.2e-32 144.4 134 61.9
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 2.7e-32 143.3 124 61.3
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 3.5e-32 142.9 267 42.7
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 6.0e-32 142.1 255 40.4
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 7.8e-32 141.7 137 59.9
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 1.3e-31 141.0 120 62.5
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 1.3e-31 141.0 242 47.5
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.7e-31 140.6 307 37.5
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 2.3e-31 140.2 268 44.4
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 2.3e-31 140.2 150 53.3
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 2.3e-31 140.2 135 56.3
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 3.9e-31 139.4 255 39.6
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 5.1e-31 139.0 119 58.8
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.5e-30 137.5 143 55.2
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 4.3e-30 136.0 258 42.6
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 9.6e-30 134.8 264 42.4
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 2.8e-29 133.3 242 48.8
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 2.8e-29 133.3 249 39.4
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 3.6e-29 132.9 287 36.6
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 4.7e-29 132.5 144 48.6
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 3.1e-28 129.8 262 42.0
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 3.1e-28 129.8 280 37.9
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.2e-27 127.9 132 59.8
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.5e-27 127.5 140 45.7
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.0e-27 127.1 132 59.8
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 2.0e-27 127.1 220 41.8
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.6e-27 126.7 132 59.8
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 2.2e-26 123.6 159 44.7
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 2.9e-26 123.2 263 35.4
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 8.4e-26 121.7 129 54.3
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 1.1e-25 121.3 128 51.6
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 1.4e-25 120.9 133 51.9
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 2.4e-25 120.2 111 55.0
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 4.2e-25 119.4 266 36.8
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 7.1e-25 118.6 239 36.8
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 9.3e-25 118.2 260 42.7
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 1.2e-24 117.9 159 41.5
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 2.7e-24 116.7 255 38.4
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 3.5e-24 116.3 120 53.3
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 4.6e-24 115.9 123 54.5
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 6.0e-24 115.5 126 49.2
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.0e-23 114.8 122 54.1
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 2.3e-23 113.6 65 80.0
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.3e-23 113.6 122 53.3
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 3.0e-23 113.2 94 62.8
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 3.0e-23 113.2 254 35.0
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 3.9e-23 112.8 198 35.9
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 2.5e-22 110.2 82 64.6
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 5.6e-22 109.0 179 40.8
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 7.3e-22 108.6 228 38.6
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.6e-21 107.5 75 69.3
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 1.6e-21 107.5 75 69.3
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.1e-21 107.1 170 41.8
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 2.1e-21 107.1 103 53.4
CSS0017832 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 2.8e-21 106.7 143 44.1
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 2.8e-21 106.7 144 45.1
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 6.2e-21 105.5 72 69.4
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 6.2e-21 105.5 72 69.4
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.4e-20 104.4 95 57.9
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 1.8e-20 104.0 244 31.1
Actinidia10294 Actinidia chinensis HOM05D004520 ORTHO05D005520 5.3e-20 102.4 119 50.4
CSS0031359 Camellia sinensis var. sinensis HOM05D004520 ORTHO05D005520 5.3e-20 102.4 143 43.4
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 5.3e-20 102.4 117 47.0
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.5e-19 100.9 117 46.2
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 1.5e-19 100.9 78 61.5
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 2.0e-19 100.5 128 44.5
Rhsim06G0085800 Rhododendron simsii HOM05D004520 ORTHO05D005520 3.4e-19 99.8 139 46.0
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 4.5e-19 99.4 252 36.9
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 5.8e-19 99.0 208 35.6
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 9.9e-19 98.2 90 60.0
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 9.9e-19 98.2 90 60.0
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 1.3e-18 97.8 65 70.8
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 2.2e-18 97.1 210 32.9
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 8.4e-18 95.1 117 49.6
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 8.4e-18 95.1 110 49.1
CARHR071410 Cardamine hirsuta HOM05D004520 ORTHO05D005520 1.4e-17 94.4 122 47.5
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.4e-17 94.4 80 56.2
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.9e-17 94.0 239 30.1
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 2.1e-16 90.5 90 56.7
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.1e-16 90.5 131 42.0
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.7e-16 90.1 136 41.2
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 3.5e-16 89.7 144 38.9
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 3.5e-16 89.7 130 40.0
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 4.6e-16 89.4 61 65.6
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 7.9e-16 88.6 131 41.2
SalBow7G1906 Salvia bowleyana HOM05D004520 ORTHO05D005520 1.0e-15 88.2 112 44.6
AL2G38200 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 1.3e-15 87.8 130 46.9
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 1.8e-15 87.4 137 40.9
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 1.8e-15 87.4 107 43.0
AT1G77932 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 1.1e-14 84.7 138 42.8
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 5.6e-14 82.4 91 53.8
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 9.6e-14 81.6 172 36.6
CAN.G535.13 Capsicum annuum HOM05D004520 ORTHO05D005520 2.8e-13 80.1 46 73.9
Lsat_1_v5_gn_9_44740 Lactuca sativa HOM05D004520 ORTHO05D005520 6.2e-13 79.0 141 38.3
CsaV3_5G023810 Cucumis sativus L. HOM05D004520 ORTHO05D005520 2.4e-12 77.0 143 38.5
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 2.4e-12 77.0 89 47.2
Atru.chr3.816 Acer truncatum HOM05D004520 ORTHO05D005520 4.0e-12 76.3 146 40.4
Carub.0002s2483 Capsella rubella HOM05D004520 ORTHO05D005520 4.0e-12 76.3 97 48.5
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 5.3e-12 75.9 130 36.2
MELO3C022816.2 Cucumis melo HOM05D004520 ORTHO05D005520 9.0e-12 75.1 143 37.8
SGA_v2.0_scaffold315G48386 Striga asiatica HOM05D004520 ORTHO05D005520 1.5e-11 74.3 115 40.0
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 2.0e-11 73.9 102 39.2
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 2.6e-11 73.6 129 38.8
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 2.6e-11 73.6 129 38.8
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 9.9e-11 71.6 125 36.8
Lj4P108T23 Lonicera japonica HOM05D004520 ORTHO05D005520 1.3e-10 71.2 109 39.4
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 1.7e-10 70.9 134 38.8
Oeu061390.1 Olea europaea HOM05D004520 ORTHO05D005520 4.9e-10 69.3 43 69.8
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 8.4e-10 68.6 169 35.5
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.1e-09 68.2 115 40.9
TAR381G0361 Trochodendron aralioides HOM05D004520 ORTHO05D005520 4.2e-09 66.2 66 57.6
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 5.5e-09 65.9 126 39.7
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 6.0e-08 62.4 136 31.6
unitig_578.g16210 Utricularia gibba HOM05D004520 ORTHO05D005520 1.0e-07 61.6 117 39.3
Nitab4.5_0000425g0070 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.8e-07 60.8 43 65.1
Glyma.04G106800 Glycine max HOM05D016564 ORTHO05D019006 2.3e-07 60.5 133 38.3
MELO3C004685.2 Cucumis melo HOM05D004622 ORTHO05D005431 3.0e-07 60.1 91 35.2
Aqoxy2G01109 Aquilegia oxysepala HOM05D004622 ORTHO05D005431 6.7e-07 58.9 139 31.7
Duzib170G0788 Durio zibethinus HOM05D004622 ORTHO05D005431 6.7e-07 58.9 123 33.3
THA.LOC104816921 Tarenaya hassleriana HOM05D004520 ORTHO05D005520 8.7e-07 58.5 104 40.4
Lj3g0018609 Lotus japonicus HOM05D004622 ORTHO05D005431 1.1e-06 58.2 125 32.0
Solyc11g068530.1 Solanum lycopersicum HOM05D004622 ORTHO05D005431 1.1e-06 58.2 75 37.3
Sopen11g027250 Solanum pennellii HOM05D004622 ORTHO05D005431 1.1e-06 58.2 75 37.3
PGSC0003DMG400026354 Solanum tuberosum HOM05D004622 ORTHO05D005431 1.1e-06 58.2 75 37.3
Glyma.12G185600 Glycine max HOM05D004622 ORTHO05D005431 1.5e-06 57.8 125 32.8
unitig_0.g1476 Utricularia gibba HOM05D000020 ORTHO05D000543 1.5e-06 57.8 81 39.5
Dinv22834 Davidia involucrata HOM05D000892 ORTHO05D000750 1.9e-06 57.4 65 41.5
Sed0001344 Sechium edule HOM05D004622 ORTHO05D005431 2.5e-06 57.0 89 34.8
DCAR_010339 Daucus carota HOM05D004622 ORTHO05D005431 3.3e-06 56.6 156 31.4
ClCG01G012170 Citrullus lanatus HOM05D004622 ORTHO05D005431 7.4e-06 55.5 73 38.4
Cc01_g09000 Coffea canephora HOM05D004622 ORTHO05D005431 7.4e-06 55.5 132 33.3
Glyma.13G315900 Glycine max HOM05D004622 ORTHO05D005431 7.4e-06 55.5 124 32.3
MD03G1147600 Malus domestica HOM05D004622 ORTHO05D005431 7.4e-06 55.5 75 37.3
RcHm_v2.0_Chr3g0453941 Rosa chinensis HOM05D006966 ORTHO05D008111 7.4e-06 55.5 138 34.1
CAN.G1524.7 Capsicum annuum HOM05D004622 ORTHO05D005431 9.6e-06 55.1 75 36.0
CsaV3_1G015000 Cucumis sativus L. HOM05D004622 ORTHO05D005431 9.6e-06 55.1 152 25.7
CsaV3_1G015910 Cucumis sativus L. HOM05D004622 ORTHO05D005431 9.6e-06 55.1 152 25.7
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 9.6e-06 55.1 121 34.7
Nitab4.5_0001216g0120 Nicotiana tabacum HOM05D004622 ORTHO05D005431 9.6e-06 55.1 128 34.4
VMungo1309G1791 Vigna mungo HOM05D016564 ORTHO05D019006 9.6e-06 55.1 133 32.3


User provided reference genes

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