Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 4.3e-237 824.3 435 100.0
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 4.4e-197 691.4 435 85.3
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 2.4e-158 562.8 435 71.5
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 6.6e-145 518.1 437 64.3
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 1.6e-143 513.5 437 64.1
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 8.1e-143 511.1 435 64.4
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 2.9e-140 502.7 436 64.0
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 8.4e-140 501.1 435 62.5
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 9.3e-139 497.7 435 63.9
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 5.6e-136 488.4 439 62.4
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 4.0e-134 482.3 435 61.1
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 4.0e-134 482.3 435 60.5
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 9.0e-134 481.1 435 60.2
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 3.8e-132 475.7 441 61.2
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 6.4e-132 474.9 435 59.5
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 3.2e-131 472.6 397 64.2
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 1.6e-130 470.3 438 60.3
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 2.7e-130 469.5 424 58.7
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 3.5e-130 469.2 441 60.3
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 6.0e-130 468.4 381 65.1
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 1.8e-129 466.8 447 59.3
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 3.0e-129 466.1 383 63.4
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 5.1e-129 465.3 429 60.1
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 2.5e-128 463.0 433 60.0
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 9.6e-128 461.1 440 58.6
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 9.6e-128 461.1 424 58.0
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 1.4e-126 457.2 424 58.0
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 4.0e-126 455.7 447 59.5
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.6e-125 453.0 451 57.2
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 3.4e-125 452.6 435 56.3
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 7.6e-125 451.4 440 57.7
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 1.9e-123 446.8 411 61.1
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 2.5e-123 446.4 438 58.7
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 7.1e-123 444.9 412 60.2
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 3.3e-120 436.0 432 58.3
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 4.3e-120 435.6 413 56.4
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 4.8e-119 432.2 440 56.6
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 4.5e-117 425.6 376 64.1
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 7.7e-117 424.9 390 59.5
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 2.9e-116 422.9 380 61.8
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 3.2e-115 419.5 380 61.3
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 9.4e-115 417.9 406 57.1
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 4.6e-114 415.6 393 56.7
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 1.4e-113 414.1 387 58.9
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 3.0e-113 412.9 438 53.2
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 8.8e-113 411.4 387 58.4
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 1.1e-112 411.0 435 54.0
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 1.5e-112 410.6 408 57.6
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 3.7e-111 406.0 435 53.8
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 1.1e-110 404.4 448 53.1
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 1.2e-109 401.0 388 56.7
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 3.4e-109 399.4 435 54.5
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 5.9e-109 398.7 391 55.8
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 7.7e-109 398.3 435 52.4
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 2.2e-108 396.7 436 53.0
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 2.9e-108 396.4 435 53.6
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 6.5e-108 395.2 435 53.1
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 1.4e-107 394.0 438 52.7
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 1.9e-107 393.7 388 53.9
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 2.5e-107 393.3 437 53.5
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 4.2e-107 392.5 448 52.5
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 4.7e-106 389.0 438 51.6
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 1.0e-105 387.9 436 52.5
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 1.8e-105 387.1 462 50.2
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 3.0e-105 386.3 472 51.1
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 3.9e-105 386.0 436 52.5
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 1.5e-104 384.0 421 53.0
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 1.1e-102 377.9 393 53.4
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 1.8e-102 377.1 305 64.9
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 3.1e-102 376.3 430 51.2
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 2.0e-101 373.6 432 50.0
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 5.9e-101 372.1 317 63.7
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 1.3e-100 370.9 431 51.0
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 1.5e-99 367.5 456 48.7
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 2.0e-96 357.1 430 51.9
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 7.4e-96 355.1 444 48.2
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 7.7e-93 345.1 434 46.5
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 1.3e-92 344.4 330 57.3
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 1.1e-91 341.3 427 45.9
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 3.2e-91 339.7 436 46.1
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 1.6e-90 337.4 297 59.9
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 3.6e-90 336.3 435 46.7
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 1.2e-88 331.3 435 48.0
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 2.0e-88 330.5 352 52.0
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 4.1e-86 322.8 435 46.0
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 4.1e-86 322.8 551 41.9
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 3.2e-83 313.2 368 51.4
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 8.0e-82 308.5 447 44.1
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 1.1e-78 298.1 216 69.4
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 5.0e-76 289.3 368 44.6
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 2.8e-74 283.5 385 42.3
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 6.8e-73 278.9 337 48.4
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 9.8e-72 275.0 349 46.4
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 3.2e-70 270.0 391 45.0
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 8.6e-68 261.9 250 56.8
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 9.5e-67 258.5 201 64.7
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 9.8e-64 248.4 432 38.9
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 2.2e-63 247.3 287 48.1
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 8.3e-63 245.4 398 42.2
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 8.4e-47 192.2 197 56.3
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 4.6e-45 186.4 443 33.9
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 6.6e-44 182.6 323 38.1
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.2e-42 178.3 389 35.2
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 8.1e-42 175.6 390 35.4
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 8.4e-39 165.6 405 31.6
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 9.3e-38 162.2 369 31.7
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 4.6e-37 159.8 110 71.8
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 2.4e-33 147.5 295 36.9
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 1.2e-32 145.2 168 53.0
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 1.6e-29 134.8 410 29.3
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 2.1e-26 124.4 124 61.3
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 1.1e-25 122.1 144 52.8
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 3.8e-23 113.6 102 56.9
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 7.6e-16 89.4 237 33.8
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 1.1e-14 85.5 131 44.3
Thhalv10015964m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 2.6e-08 64.3 158 34.8
Dinv35575 Davidia involucrata HOM05D006045 ORTHO05D007678 1.0e-07 62.4 216 31.5
Medtr7g062690 Medicago truncatula HOM05D006045 ORTHO05D007678 1.7e-07 61.6 67 52.2
unitig_21.g21014 Utricularia gibba HOM05D006045 ORTHO05D007678 8.4e-07 59.3 77 45.5
Glyma.10G191650 Glycine max HOM05D006045 ORTHO05D007678 4.2e-06 57.0 95 37.9
Cre17.g702800 Chlamydomonas reinhardtii HOM05D006045 ORTHO05D143896 5.5e-06 56.6 139 30.9
Medtr2g093870 Medicago truncatula HOM05D006045 ORTHO05D007678 5.5e-06 56.6 84 45.2
Lsat_1_v5_gn_1_108300 Lactuca sativa HOM05D000747 ORTHO05D015226 7.2e-06 56.2 109 38.5
TPR.G40448 Trifolium pratense HOM05D006045 ORTHO05D007678 7.2e-06 56.2 59 50.8


User provided reference genes

Program Settings