Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G090100 Populus trichocarpa HOM05D008117 ORTHO05D010265 1.2e-46 189.5 95 100.0
Sabra02G0071000 Salix brachista HOM05D008117 ORTHO05D010265 2.0e-33 145.6 88 85.2
Potri.005G171000 Populus trichocarpa HOM05D008117 ORTHO05D010265 1.0e-26 123.2 93 77.4
CsaV3_6G035660 Cucumis sativus L. HOM05D008117 ORTHO05D010265 3.1e-23 111.7 85 68.2
Manes.18G072200 Manihot esculenta HOM05D008117 ORTHO05D010265 5.3e-23 110.9 80 73.8
ClCG08G010860 Citrullus lanatus HOM05D008117 ORTHO05D010265 9.1e-23 110.2 85 65.9
MD15G1359700 Malus domestica HOM05D008117 ORTHO05D010265 1.7e-21 105.9 72 72.2
MELO3C030294.2 Cucumis melo HOM05D008117 ORTHO05D010265 5.0e-21 104.4 79 70.9
Prupe.1G507400 Prunus persica HOM05D008117 ORTHO05D010265 1.5e-20 102.8 82 68.3
Sed0012248 Sechium edule HOM05D008117 ORTHO05D010265 1.5e-20 102.8 86 61.6
Thecc.08G115700 Theobroma cacao HOM05D008117 ORTHO05D010265 3.2e-20 101.7 83 63.9
CiPaw.05G230200 Carya illinoinensis HOM05D008117 ORTHO05D010265 5.5e-20 100.9 83 65.1
Gohir.A05G231100 Gossypium hirsutum HOM05D008117 ORTHO05D010265 1.6e-19 99.4 83 62.7
QL12p035434 Quercus lobata HOM05D008117 ORTHO05D010265 2.7e-19 98.6 73 65.8
vmacro12526 Vaccinium macrocarpon HOM05D008117 ORTHO05D010265 2.3e-18 95.5 100 57.0
Rhsim13G0192300 Rhododendron simsii HOM05D008117 ORTHO05D010265 3.0e-18 95.1 76 68.4
CSS0024149 Camellia sinensis var. sinensis HOM05D008117 ORTHO05D010265 4.0e-18 94.7 77 66.2
Psat5g111920 Pisum sativum HOM05D008117 ORTHO05D010265 4.0e-18 94.7 73 64.4
Ciclev10002965m.g Citrus clementina HOM05D008117 ORTHO05D010265 6.8e-18 94.0 101 54.5
Duzib041G0298 Durio zibethinus HOM05D008117 ORTHO05D010265 6.8e-18 94.0 83 61.4
EL10Ac5g11972 Beta vulgaris HOM05D008117 ORTHO05D010265 1.5e-17 92.8 74 62.2
Lj1g0006954 Lotus japonicus HOM05D008117 ORTHO05D010265 2.6e-17 92.0 72 63.9
DCAR_028229 Daucus carota HOM05D008117 ORTHO05D010265 3.4e-17 91.7 76 59.2
Eucgr.F03736 Eucalyptus grandis HOM05D008117 ORTHO05D010265 3.4e-17 91.7 72 66.7
arahy.Tifrunner.gnm1.ann1.J5UY3S Arachis hypogaea HOM05D008117 ORTHO05D010265 4.4e-17 91.3 77 58.4
arahy.Tifrunner.gnm1.ann1.V815ZK Arachis hypogaea HOM05D008117 ORTHO05D010265 5.7e-17 90.9 77 58.4
Glyma.13G084800 Glycine max HOM05D008117 ORTHO05D010265 7.5e-17 90.5 73 60.3
Nn5g27934 Nelumbo nucifera HOM05D008117 ORTHO05D010265 7.5e-17 90.5 82 59.8
Phvul.008G168800 Phaseolus vulgaris HOM05D008117 ORTHO05D010265 9.8e-17 90.1 73 61.6
FvH4_5g38460 Fragaria vesca HOM05D008117 ORTHO05D010265 2.8e-16 88.6 73 63.0
Sc23g0000960 Simmondsia chinensis HOM05D008117 ORTHO05D010265 2.8e-16 88.6 72 58.3
FAN08G2903 Fragaria x ananassa HOM05D008117 ORTHO05D010265 3.7e-16 88.2 76 60.5
Glyma.14G166600 Glycine max HOM05D008117 ORTHO05D010265 4.8e-16 87.8 73 58.9
Hund16816 Selenicereus undatus HOM05D008117 ORTHO05D010265 6.3e-16 87.4 82 57.3
PGR042G1408 Punica granatum HOM05D008117 ORTHO05D010265 8.3e-16 87.0 71 64.8
Medtr5g062750 Medicago truncatula HOM05D008117 ORTHO05D010265 1.1e-15 86.7 70 60.0
RcHm_v2.0_Chr7g0240501 Rosa chinensis HOM05D008117 ORTHO05D010265 1.1e-15 86.7 71 63.4
Sopen11g008360 Solanum pennellii HOM05D008117 ORTHO05D010265 1.1e-15 86.7 77 57.1
PGSC0003DMG400006546 Solanum tuberosum HOM05D008117 ORTHO05D010265 1.1e-15 86.7 83 57.8
MSTRG.24141 Avicennia marina HOM05D008117 ORTHO05D010265 1.4e-15 86.3 77 55.8
FAN13G1450 Fragaria x ananassa HOM05D008117 ORTHO05D010265 1.4e-15 86.3 73 61.6
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 1.4e-15 86.3 76 59.2
AUR62002978 Chenopodium quinoa HOM05D008117 ORTHO05D010265 2.4e-15 85.5 75 58.7
Gohir.D05G233600 Gossypium hirsutum HOM05D008117 ORTHO05D010265 2.4e-15 85.5 59 71.2
Gorai.009G241700 Gossypium raimondii HOM05D008117 ORTHO05D010265 2.4e-15 85.5 59 71.2
Oeu002001.1 Olea europaea HOM05D008117 ORTHO05D010265 2.4e-15 85.5 74 60.8
HPP92_011399 Vanilla planifolia HOM05D008117 ORTHO05D010265 5.4e-15 84.3 80 56.2
Lalb_Chr04g0253261 Lupinus albus HOM05D008117 ORTHO05D010265 7.0e-15 84.0 90 52.2
CANSAT35G0099 Cannabis sativa HOM05D008117 ORTHO05D010265 9.1e-15 83.6 76 61.8
SGA_v2.0_scaffold25G11087 Striga asiatica HOM05D008117 ORTHO05D010265 3.5e-14 81.6 73 54.8
EL10Ac1g00048 Beta vulgaris HOM05D008117 ORTHO05D010265 7.7e-14 80.5 71 57.7
FAN04G0767 Fragaria x ananassa HOM05D008117 ORTHO05D010265 2.9e-13 78.6 80 56.2
CAN.G61.2 Capsicum annuum HOM05D008117 ORTHO05D010265 5.0e-13 77.8 84 51.2
Thhalv10009847m.g Eutrema salsugineum HOM05D008117 ORTHO05D010265 8.6e-13 77.0 84 56.0
C01p32870 Brassica napus HOM05D008117 ORTHO05D010265 1.5e-12 76.3 74 62.2
CARHR035030 Cardamine hirsuta HOM05D008117 ORTHO05D010265 2.5e-12 75.5 79 54.4
BolC1t03228H Brassica oleracea HOM05D008117 ORTHO05D010265 3.2e-12 75.1 74 60.8
A01p25940 Brassica napus HOM05D008117 ORTHO05D010265 4.2e-12 74.7 74 60.8
CDE08G1486 Ceratophyllum demersum HOM05D008117 ORTHO05D010265 4.2e-12 74.7 53 69.8
Carub.0001s3375 Capsella rubella HOM05D008117 ORTHO05D010265 1.2e-11 73.2 84 52.4
Aa31LG6G9030 Aethionema arabicum HOM05D008117 ORTHO05D010265 1.8e-10 69.3 72 59.7
AT1G36380 Arabidopsis thaliana HOM05D008117 ORTHO05D010265 3.0e-10 68.6 84 50.0
Zm00001eb227210 Zea mays HOM05D008117 ORTHO05D010265 6.8e-10 67.4 61 55.7
Os02g0552400 Oryza sativa ssp. japonica HOM05D008117 ORTHO05D010265 8.8e-10 67.0 72 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1449 Anthoceros agrestis HOM05D008117 ORTHO05D010265 2.6e-09 65.5 65 47.7
A05p19980 Brassica napus HOM05D008117 ORTHO05D010265 2.6e-09 65.5 67 56.7
BraA05t20905Z Brassica rapa HOM05D008117 ORTHO05D010265 2.6e-09 65.5 67 56.7
VMungo0647G2241 Vigna mungo HOM05D008117 ORTHO05D010265 4.4e-09 64.7 62 48.4
Zm00001eb243570 Zea mays HOM05D008117 ORTHO05D010265 1.7e-08 62.8 51 62.7
CDE06G1754 Ceratophyllum demersum HOM05D000001 ORTHO05D011242 2.4e-07 58.9 39 69.2
SalBow6G0993 Salvia bowleyana HOM05D008117 ORTHO05D010265 9.2e-07 57.0 57 54.4
SEGI_19848 Sequoiadendron giganteum HOM05D008117 ORTHO05D010265 7.8e-06 53.9 61 50.8


User provided reference genes

Program Settings