Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.2e-120 436.4 211 100.0
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.3e-82 310.1 208 74.5
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.5e-73 280.0 215 67.4
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 2.1e-72 276.2 216 69.9
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 3.4e-70 268.9 210 67.6
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 8.4e-69 264.2 200 66.0
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 6.6e-66 254.6 210 65.2
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.5e-62 241.9 206 63.6
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 9.9e-62 240.7 208 61.5
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 3.8e-61 238.8 213 63.8
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 3.8e-61 238.8 218 58.3
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.1e-60 237.3 209 58.9
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 1.1e-60 237.3 212 60.4
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.1e-60 237.3 212 61.8
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 1.4e-60 236.9 231 55.0
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 7.1e-60 234.6 213 61.5
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 7.1e-60 234.6 214 60.3
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 9.3e-60 234.2 230 55.2
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 7.9e-59 231.1 224 58.9
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.0e-58 229.2 212 62.7
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.0e-58 229.2 212 62.7
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.0e-58 229.2 200 60.0
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 6.7e-58 228.0 211 59.2
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 8.7e-58 227.6 207 59.4
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 2.5e-57 226.1 211 58.8
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 3.3e-57 225.7 223 59.2
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 5.6e-57 224.9 221 58.4
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.6e-57 224.9 206 58.3
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 5.6e-57 224.9 207 59.4
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 7.4e-57 224.6 220 58.2
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 1.3e-56 223.8 181 65.7
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 2.1e-56 223.0 206 57.8
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.7e-56 222.2 207 58.9
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 4.8e-56 221.9 216 56.5
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 4.8e-56 221.9 211 58.3
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.8e-56 221.9 212 60.8
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 4.8e-56 221.9 191 60.7
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 8.1e-56 221.1 218 55.5
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.4e-55 220.3 207 56.0
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 2.4e-55 219.5 211 57.8
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.9e-53 212.6 217 57.1
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.1e-52 210.7 226 55.3
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 5.5e-52 208.4 212 51.9
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 1.6e-51 206.8 213 56.8
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.7e-51 206.1 218 56.4
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.6e-51 205.3 217 56.2
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.0e-50 204.1 218 56.4
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 1.8e-50 203.4 211 54.0
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 5.1e-50 201.8 211 54.5
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.5e-49 199.5 221 53.4
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.3e-49 199.1 191 57.1
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 7.4e-49 198.0 222 53.2
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 1.3e-48 197.2 230 50.9
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.6e-48 196.8 209 55.0
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.6e-48 196.8 221 52.5
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.6e-48 196.8 221 52.9
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 3.7e-48 195.7 211 53.1
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.7e-48 195.7 214 53.3
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.1e-47 194.1 215 51.2
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 2.4e-47 193.0 209 53.1
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 4.5e-46 188.7 216 51.4
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 1.0e-45 187.6 212 47.2
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 1.3e-45 187.2 212 48.1
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.7e-45 186.8 157 65.0
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.8e-45 185.7 219 50.7
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 6.5e-45 184.9 224 47.8
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 1.1e-44 184.1 220 48.6
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 9.3e-44 181.0 213 49.3
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.6e-43 180.3 213 49.3
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 3.5e-43 179.1 212 50.5
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 3.5e-43 179.1 212 50.5
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 3.5e-43 179.1 215 51.2
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 4.6e-43 178.7 231 46.8
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 3.0e-42 176.0 252 46.4
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 3.0e-42 176.0 215 47.9
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 3.0e-42 176.0 215 47.4
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 8.7e-42 174.5 220 50.0
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 5.7e-41 171.8 222 46.8
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 9.7e-41 171.0 226 46.9
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 1.6e-40 170.2 215 45.1
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 2.8e-40 169.5 99 82.8
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.8e-40 169.5 215 47.4
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 4.8e-40 168.7 193 50.3
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 4.8e-40 168.7 214 45.8
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.3e-40 168.3 200 48.0
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 6.3e-40 168.3 189 47.1
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 8.2e-40 167.9 212 47.2
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 1.8e-39 166.8 215 46.5
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.4e-39 166.4 210 50.5
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 3.1e-39 166.0 214 45.3
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 3.1e-39 166.0 214 45.3
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 3.1e-39 166.0 214 45.3
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 6.9e-39 164.9 214 45.8
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 6.9e-39 164.9 240 45.4
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 1.2e-38 164.1 218 45.9
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.2e-38 164.1 221 47.5
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 2.0e-38 163.3 209 47.8
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 2.0e-38 163.3 200 47.5
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 4.5e-38 162.2 215 45.1
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 4.5e-38 162.2 217 43.8
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 4.5e-38 162.2 215 45.1
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 5.9e-38 161.8 217 43.3
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 5.9e-38 161.8 199 52.8
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 1.0e-37 161.0 210 45.2
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.9e-37 159.5 188 48.9
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 3.8e-37 159.1 214 43.9
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 3.8e-37 159.1 212 47.2
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 6.5e-37 158.3 218 45.0
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 6.5e-37 158.3 218 45.0
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 8.5e-37 157.9 213 42.7
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 8.5e-37 157.9 213 42.7
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 8.5e-37 157.9 213 42.7
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.4e-36 157.1 196 47.4
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 2.5e-36 156.4 213 42.3
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 3.2e-36 156.0 218 44.5
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 3.2e-36 156.0 218 44.5
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 3.2e-36 156.0 218 44.5
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.1e-35 153.3 173 50.3
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 2.1e-35 153.3 202 46.0
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 4.6e-35 152.1 202 43.6
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 4.6e-35 152.1 215 43.3
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.1e-35 151.8 173 49.7
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 7.9e-35 151.4 224 42.0
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.0e-34 151.0 211 44.1
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 3.9e-34 149.1 225 41.8
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 6.7e-34 148.3 206 46.6
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 1.5e-33 147.1 230 47.0
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 2.5e-33 146.4 96 71.9
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 5.7e-33 145.2 253 41.9
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 9.7e-33 144.4 246 41.1
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 6.3e-32 141.7 176 50.6
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.4e-31 140.6 205 41.5
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 2.4e-31 139.8 180 44.4
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 3.1e-31 139.4 205 43.4
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.9e-29 132.9 183 43.7
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 1.2e-27 127.5 207 41.5
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 7.9e-27 124.8 153 51.0
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 2.0e-25 120.2 186 41.4
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.6e-25 119.8 215 36.3
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 4.4e-25 119.0 204 37.3
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.7e-25 118.6 218 34.9
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 9.7e-25 117.9 120 51.7
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.7e-24 117.1 205 36.1
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.7e-24 115.9 127 53.5
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 7.0e-23 111.7 209 40.2
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.2e-22 110.9 190 37.9
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 3.5e-22 109.4 219 34.2
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 3.5e-22 109.4 219 36.1
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 6.5e-21 105.1 183 41.0
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.9e-20 103.6 181 39.8
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 1.9e-20 103.6 229 37.1
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 4.2e-20 102.4 217 36.9
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 4.7e-19 99.0 110 50.0
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 1.5e-17 94.0 131 51.9
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 9.7e-17 91.3 169 37.3
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.7e-16 90.5 170 36.5
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 2.8e-16 89.7 249 28.9
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 4.8e-16 89.0 200 34.5
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 1.8e-15 87.0 88 53.4
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.5e-14 82.8 211 33.2
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.0e-13 81.3 90 50.0
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 3.8e-13 79.3 192 32.8
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 3.8e-13 79.3 192 32.8
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 5.0e-13 79.0 192 32.3
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 5.0e-13 79.0 205 31.2
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 1.9e-12 77.0 171 29.8
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 2.5e-12 76.6 192 32.3
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 2.5e-12 76.6 192 32.3
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.6e-11 73.9 189 32.3
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 3.6e-11 72.8 90 44.4
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.4e-10 70.9 128 36.7
Nn5g27936 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.7e-08 63.9 100 36.0
CAN.G17.22 Capsicum annuum HOM05D000434 ORTHO05D005487 2.4e-07 60.1 47 68.1


User provided reference genes

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