Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 0.0e+00 1615.1 819 100.0
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 0.0e+00 1087.0 812 73.3
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 3.1e-42 177.9 263 39.9
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 1.1e-39 169.5 521 28.0
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 2.5e-36 158.3 225 40.0
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 4.3e-36 157.5 256 37.1
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 8.1e-35 153.3 655 24.9
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 2.6e-33 148.3 592 26.5
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.9e-31 142.1 635 26.5
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 1.6e-30 139.0 398 30.4
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.7e-30 138.3 268 32.8
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 1.7e-29 135.6 260 34.2
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 3.9e-29 134.4 259 34.0
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 7.3e-28 130.2 170 41.8
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 7.3e-28 130.2 638 24.0
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 1.4e-26 125.9 364 30.5
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 1.8e-26 125.6 585 27.5
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 2.4e-26 125.2 250 31.6
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 1.3e-24 119.4 238 32.4
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 4.9e-24 117.5 230 33.0
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 1.9e-23 115.5 565 27.6
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 2.4e-23 115.2 233 32.6
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 2.4e-23 115.2 197 37.1
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 4.2e-23 114.4 601 23.6
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 5.4e-23 114.0 301 28.9
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 5.4e-23 114.0 240 32.9
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 1.2e-22 112.8 253 30.0
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.1e-22 112.1 238 31.9
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 2.1e-22 112.1 155 41.3
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 4.6e-22 110.9 110 49.1
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 7.9e-22 110.2 197 35.0
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.0e-21 109.8 362 29.6
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 1.0e-21 109.8 199 34.7
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 3.0e-21 108.2 275 29.8
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 6.7e-21 107.1 254 29.9
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 6.7e-21 107.1 264 30.7
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 1.1e-20 106.3 202 33.7
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 1.5e-20 105.9 189 34.4
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 1.5e-20 105.9 113 44.2
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 1.9e-20 105.5 198 32.8
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 2.5e-20 105.1 200 34.5
Cpa.g.sc1156.1 Carica papaya HOM05D029276 ORTHO05D003486 3.3e-20 104.8 532 25.8
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 5.6e-20 104.0 194 32.0
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.3e-19 102.8 567 27.9
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 1.3e-19 102.8 114 42.1
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 2.1e-19 102.1 346 28.0
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.1e-19 102.1 162 37.7
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 2.1e-19 102.1 257 32.3
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 2.8e-19 101.7 567 27.5
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 4.8e-19 100.9 578 27.0
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 6.2e-19 100.5 264 29.9
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 8.1e-19 100.1 199 32.2
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 1.4e-18 99.4 196 32.1
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 1.4e-18 99.4 264 29.9
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.8e-18 99.0 115 36.5
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.8e-18 99.0 328 29.3
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 1.8e-18 99.0 168 32.7
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 2.4e-18 98.6 168 35.1
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 3.1e-18 98.2 113 43.4
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 3.1e-18 98.2 204 32.4
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 4.0e-18 97.8 262 29.0
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 5.3e-18 97.4 148 38.5
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 5.3e-18 97.4 245 29.0
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 5.3e-18 97.4 110 46.4
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 6.9e-18 97.1 278 28.4
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 6.9e-18 97.1 374 28.6
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 9.0e-18 96.7 190 30.0
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 9.0e-18 96.7 145 38.6
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 1.2e-17 96.3 234 30.3
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 1.2e-17 96.3 168 36.3
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 2.0e-17 95.5 169 33.1
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.6e-17 95.1 223 30.0
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 3.4e-17 94.7 204 29.9
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 5.8e-17 94.0 571 26.3
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 7.6e-17 93.6 154 35.1
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 7.6e-17 93.6 174 37.4
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 7.6e-17 93.6 208 31.7
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 7.6e-17 93.6 150 32.0
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 9.9e-17 93.2 178 34.3
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.3e-16 92.8 157 36.3
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 4.9e-16 90.9 141 39.0
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 4.9e-16 90.9 220 32.7
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 4.9e-16 90.9 152 32.2
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 6.4e-16 90.5 147 38.8
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 6.4e-16 90.5 588 24.3
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 6.4e-16 90.5 152 32.2
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 8.4e-16 90.1 195 33.8
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 8.4e-16 90.1 445 25.8
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 8.4e-16 90.1 239 29.7
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 1.1e-15 89.7 195 29.7
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 1.1e-15 89.7 105 34.3
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.9e-15 89.0 360 28.3
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 2.4e-15 88.6 323 29.4
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.2e-15 88.2 195 31.3
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 3.2e-15 88.2 216 32.4
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 3.2e-15 88.2 112 42.0
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 4.2e-15 87.8 105 40.0
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 5.5e-15 87.4 208 31.7
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 5.5e-15 87.4 233 30.5
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 5.5e-15 87.4 181 32.0
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 7.1e-15 87.0 165 31.5
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 7.1e-15 87.0 178 29.8
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 9.3e-15 86.7 259 26.6
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 9.3e-15 86.7 167 31.7
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 1.2e-14 86.3 160 30.0
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.6e-14 85.9 141 39.7
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 2.1e-14 85.5 99 43.4
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.7e-14 85.1 102 39.2
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 2.7e-14 85.1 106 40.6
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 3.5e-14 84.7 220 32.3
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 4.6e-14 84.3 165 30.3
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 4.6e-14 84.3 193 31.6
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 6.0e-14 84.0 160 29.4
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 6.0e-14 84.0 164 32.3
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 7.9e-14 83.6 142 37.3
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.0e-13 83.2 257 28.4
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 1.0e-13 83.2 200 30.0
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.0e-13 83.2 373 26.5
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 1.3e-13 82.8 90 44.4
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 1.8e-13 82.4 196 29.1
Lj4P677T27 Lonicera japonica HOM05D046523 ORTHO05D048438 1.8e-13 82.4 129 38.0
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 3.9e-13 81.3 257 28.0
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 5.1e-13 80.9 191 27.7
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 6.7e-13 80.5 102 40.2
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 6.7e-13 80.5 147 30.6
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 6.7e-13 80.5 176 33.5
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 8.7e-13 80.1 112 33.9
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 1.1e-12 79.7 102 39.2
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.5e-12 79.3 159 34.6
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.5e-12 79.3 119 37.8
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.9e-12 79.0 479 25.9
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 2.5e-12 78.6 162 30.9
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 4.3e-12 77.8 581 23.1
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 4.3e-12 77.8 183 31.1
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 4.3e-12 77.8 228 28.1
TAR381G0115 Trochodendron aralioides HOM05D006236 ORTHO05D003486 4.3e-12 77.8 277 25.3
Lj4P679T21 Lonicera japonica HOM05D046523 ORTHO05D048438 5.6e-12 77.4 116 37.9
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 7.4e-12 77.0 114 36.8
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 1.3e-11 76.3 124 35.5
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.3e-11 76.3 105 32.4
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 1.3e-11 76.3 105 32.4
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 1.3e-11 76.3 529 21.0
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.6e-11 75.9 523 21.2
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.1e-11 75.5 144 33.3
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 2.1e-11 75.5 144 33.3
Medtr3g097180 Medicago truncatula HOM05D006236 ORTHO05D003486 3.7e-11 74.7 97 38.1
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 3.7e-11 74.7 102 38.2
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 4.8e-11 74.3 127 30.7
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 4.8e-11 74.3 158 30.4
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 6.2e-11 73.9 160 30.6
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 8.1e-11 73.6 180 32.8
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 1.1e-10 73.2 77 45.5
SEGI_27702 Sequoiadendron giganteum HOM05D002377 ORTHO05D003486 1.1e-10 73.2 97 40.2
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 1.1e-10 73.2 157 28.0
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 1.4e-10 72.8 158 29.7
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 1.4e-10 72.8 118 35.6
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 2.4e-10 72.0 159 29.6
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 3.1e-10 71.6 186 28.0
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 6.9e-10 70.5 160 31.2
DCAR_014364 Daucus carota HOM05D006236 ORTHO05D003486 2.0e-09 68.9 145 30.3
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 2.0e-09 68.9 142 33.8
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 3.4e-09 68.2 154 29.9
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 4.5e-09 67.8 103 35.0
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 5.8e-09 67.4 152 28.9
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 5.8e-09 67.4 145 29.7
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 7.6e-09 67.0 444 21.6
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 7.6e-09 67.0 103 35.9
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 1.0e-08 66.6 278 26.6
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.0e-08 66.6 504 25.6
Cpa.g.sc1156.3 Carica papaya HOM05D006236 ORTHO05D003486 1.3e-08 66.2 54 51.9
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 1.7e-08 65.9 278 26.6
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 1.7e-08 65.9 278 26.6
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 1.7e-08 65.9 182 28.0
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 1.7e-08 65.9 99 33.3
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 1.7e-08 65.9 134 30.6
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 2.2e-08 65.5 135 34.1
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 2.2e-08 65.5 135 34.1
Cc10_g13660 Coffea canephora HOM05D006236 ORTHO05D003486 6.5e-08 63.9 88 43.2
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 6.5e-08 63.9 105 32.4
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 6.5e-08 63.9 297 24.9
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 8.4e-08 63.5 105 32.4
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 2.5e-07 62.0 120 32.5
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 1.2e-06 59.7 113 30.1
ECA246G0424 Erigeron canadensis HOM05D006236 ORTHO05D003486 2.7e-06 58.5 154 26.6
unitig_899.g14422 Utricularia gibba HOM05D006236 ORTHO05D003486 3.5e-06 58.2 180 25.6
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 4.6e-06 57.8 112 31.2


User provided reference genes

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