Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.8e-38 160.6 78 100.0
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 6.1e-25 117.1 76 72.4
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 6.1e-25 117.1 70 82.9
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 5.0e-19 97.4 78 66.7
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 2.3e-16 88.6 76 68.4
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.0e-15 85.5 82 57.3
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 1.4e-13 79.3 81 55.6
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.8e-13 79.0 79 57.0
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 5.4e-13 77.4 71 60.6
QL02p024551 Quercus lobata HOM05D004540 ORTHO05D004852 7.0e-13 77.0 78 56.4
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 2.0e-12 75.5 72 59.7
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.3e-11 72.8 73 54.8
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.7e-11 72.4 84 51.2
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 1.7e-11 72.4 74 54.1
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.9e-11 71.6 74 52.7
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 3.9e-11 71.2 85 54.1
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 6.6e-11 70.5 72 54.2
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 8.6e-11 70.1 85 50.6
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 1.1e-10 69.7 79 53.2
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 1.5e-10 69.3 76 51.3
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 1.9e-10 68.9 70 52.9
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 1.9e-10 68.9 71 53.5
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 2.5e-10 68.6 73 50.7
CiPaw.15G019000 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.3e-10 68.2 84 52.4
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 3.3e-10 68.2 65 56.9
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.3e-10 67.8 70 54.3
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 4.3e-10 67.8 68 55.9
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 5.6e-10 67.4 67 46.3
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 5.6e-10 67.4 85 47.1
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 1.2e-09 66.2 68 55.9
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.2e-09 66.2 74 51.4
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.6e-09 65.9 71 49.3
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.6e-09 65.9 71 52.1
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.6e-09 65.9 71 52.1
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.6e-09 65.9 71 52.1
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.6e-09 65.9 70 54.3
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 2.1e-09 65.5 79 48.1
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 2.1e-09 65.5 83 47.0
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 2.8e-09 65.1 74 51.4
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 2.8e-09 65.1 70 51.4
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.6e-09 64.7 70 52.9
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 4.7e-09 64.3 72 51.4
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 8.0e-09 63.5 68 54.4
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 8.0e-09 63.5 68 50.0
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 8.0e-09 63.5 68 50.0
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.8e-08 62.4 60 55.0
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.8e-08 62.4 73 49.3
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 2.3e-08 62.0 70 47.1
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 4.0e-08 61.2 66 53.0
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 5.2e-08 60.8 76 50.0
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 8.9e-08 60.1 67 53.7
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 1.2e-07 59.7 84 42.9
TPR.G10141 Trifolium pratense HOM05D004540 ORTHO05D004852 1.5e-07 59.3 70 48.6
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 2.0e-07 58.9 70 45.7
Cpa.g.sc49.40 Carica papaya HOM05D004540 ORTHO05D004852 2.6e-07 58.5 65 49.2
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 2.6e-07 58.5 68 45.6
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 3.4e-07 58.2 67 47.8
CSS0005521 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 9.8e-07 56.6 70 45.7
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 9.8e-07 56.6 69 46.4
Lalb_Chr03g0035181 Lupinus albus HOM05D004540 ORTHO05D004852 9.8e-07 56.6 79 45.6
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 1.3e-06 56.2 54 55.6
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 1.3e-06 56.2 64 48.4
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.7e-06 55.8 69 42.0
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.7e-06 55.8 69 42.0
BcaC08g47196 Brassica carinata HOM05D010542 ORTHO05D012589 2.2e-06 55.5 79 39.2
Gohir.A05G242250 Gossypium hirsutum HOM05D037961 ORTHO05D004852 2.2e-06 55.5 80 42.5
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 2.2e-06 55.5 75 46.7
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.9e-06 55.1 79 43.0
Gohir.D05G243600 Gossypium hirsutum HOM05D037961 ORTHO05D004852 2.9e-06 55.1 80 42.5
Gorai.009G252900 Gossypium raimondii HOM05D037961 ORTHO05D004852 2.9e-06 55.1 80 42.5
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 3.7e-06 54.7 73 42.5
BcaC08g47197 Brassica carinata HOM05D010542 ORTHO05D012589 4.9e-06 54.3 70 42.9
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 4.9e-06 54.3 76 47.4
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 4.9e-06 54.3 79 43.0
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.9e-06 54.3 79 43.0
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 4.9e-06 54.3 79 43.0
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 4.9e-06 54.3 49 59.2
Thhalv10019319m.g Eutrema salsugineum HOM05D010542 ORTHO05D012589 6.4e-06 53.9 63 44.4
TPR.G36647 Trifolium pratense HOM05D004540 ORTHO05D004852 6.4e-06 53.9 79 45.6
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 8.3e-06 53.5 66 45.5


User provided reference genes

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