Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.2e-47 192.6 85 100.0
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 4.6e-34 147.5 74 83.8
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 4.6e-34 147.5 74 83.8
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.0e-33 146.4 76 82.9
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 1.0e-33 146.4 70 88.6
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 1.3e-33 146.0 73 83.6
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.3e-33 146.0 69 88.4
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.8e-33 145.6 72 86.1
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 1.8e-33 145.6 70 88.6
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 1.8e-33 145.6 73 82.2
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 2.3e-33 145.2 70 85.7
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 2.3e-33 145.2 70 85.7
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 3.0e-33 144.8 69 91.3
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 3.9e-33 144.4 69 87.0
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 3.9e-33 144.4 71 84.5
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 3.9e-33 144.4 69 87.0
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 3.9e-33 144.4 69 89.9
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 5.1e-33 144.1 74 82.4
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 6.7e-33 143.7 69 85.5
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 6.7e-33 143.7 70 85.7
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 6.7e-33 143.7 70 84.3
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 6.7e-33 143.7 69 88.4
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 8.7e-33 143.3 69 85.5
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 8.7e-33 143.3 69 88.4
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 1.1e-32 142.9 69 91.3
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 1.1e-32 142.9 69 89.9
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 1.9e-32 142.1 69 85.5
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 2.5e-32 141.7 69 85.5
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 2.5e-32 141.7 71 83.1
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 2.5e-32 141.7 69 85.5
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 2.5e-32 141.7 69 85.5
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 2.5e-32 141.7 73 82.2
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 2.5e-32 141.7 69 85.5
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 3.3e-32 141.4 83 74.7
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 4.3e-32 141.0 69 85.5
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 4.3e-32 141.0 83 75.9
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 4.3e-32 141.0 69 82.6
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 5.6e-32 140.6 76 77.6
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 7.4e-32 140.2 69 87.0
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 7.4e-32 140.2 77 79.2
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 7.4e-32 140.2 79 74.7
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 7.4e-32 140.2 69 85.5
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 7.4e-32 140.2 69 85.5
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 7.4e-32 140.2 69 85.5
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 9.6e-32 139.8 69 82.6
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 1.3e-31 139.4 69 85.5
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 1.3e-31 139.4 69 85.5
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 1.6e-31 139.0 73 82.2
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 1.6e-31 139.0 69 84.1
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.6e-31 139.0 85 70.6
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 2.1e-31 138.7 71 81.7
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 2.1e-31 138.7 69 85.5
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 2.1e-31 138.7 69 85.5
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 2.8e-31 138.3 71 81.7
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 2.8e-31 138.3 69 84.1
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 2.8e-31 138.3 69 82.6
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 2.8e-31 138.3 70 80.0
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 3.7e-31 137.9 70 81.4
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 3.7e-31 137.9 69 81.2
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 4.8e-31 137.5 69 81.2
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 4.8e-31 137.5 73 80.8
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 4.8e-31 137.5 73 79.5
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 4.8e-31 137.5 69 82.6
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 6.2e-31 137.1 69 84.1
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 6.2e-31 137.1 69 84.1
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 6.2e-31 137.1 69 84.1
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 6.2e-31 137.1 68 82.4
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 6.2e-31 137.1 69 84.1
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 8.1e-31 136.7 69 81.2
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 1.1e-30 136.3 74 79.7
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.1e-30 136.3 69 84.1
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 1.1e-30 136.3 71 80.3
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 1.1e-30 136.3 70 82.9
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.1e-30 136.3 69 82.6
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 1.4e-30 136.0 69 82.6
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.4e-30 136.0 69 82.6
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 1.8e-30 135.6 74 78.4
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 1.8e-30 135.6 67 79.1
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 2.4e-30 135.2 69 82.6
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 2.4e-30 135.2 69 82.6
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 3.1e-30 134.8 69 81.2
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 3.1e-30 134.8 69 82.6
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 3.1e-30 134.8 69 82.6
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 4.0e-30 134.4 69 82.6
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 4.0e-30 134.4 69 82.6
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 5.3e-30 134.0 75 76.0
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 6.9e-30 133.7 69 82.6
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 6.9e-30 133.7 69 84.1
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 6.9e-30 133.7 69 79.7
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 6.9e-30 133.7 69 85.5
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 6.9e-30 133.7 69 85.5
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 6.9e-30 133.7 69 79.7
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.2e-29 132.9 68 80.9
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.2e-29 132.9 69 78.3
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 2.6e-29 131.7 68 85.3
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 2.6e-29 131.7 62 85.5
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 2.6e-29 131.7 69 76.8
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 2.6e-29 131.7 82 73.2
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 4.5e-29 131.0 61 86.9
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 4.5e-29 131.0 69 82.6
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 4.5e-29 131.0 69 79.7
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 5.8e-29 130.6 69 82.6
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 7.6e-29 130.2 74 75.7
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 9.9e-29 129.8 94 63.8
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 9.9e-29 129.8 69 79.7
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 9.9e-29 129.8 69 76.8
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 9.9e-29 129.8 69 81.2
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.3e-28 129.4 76 71.1
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.2e-28 128.6 69 78.3
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.2e-28 128.6 69 78.3
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 2.9e-28 128.3 66 80.3
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 2.9e-28 128.3 101 58.4
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 2.9e-28 128.3 101 58.4
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 2.9e-28 128.3 70 78.6
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 2.9e-28 128.3 69 81.2
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.8e-28 127.9 69 81.2
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 4.9e-28 127.5 60 85.0
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 4.9e-28 127.5 69 79.7
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 4.9e-28 127.5 78 70.5
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 8.4e-28 126.7 70 77.1
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 1.1e-27 126.3 107 56.1
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 1.4e-27 125.9 69 79.7
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.4e-27 125.9 70 77.1
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 1.4e-27 125.9 70 77.1
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 1.4e-27 125.9 68 75.0
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 1.4e-27 125.9 69 76.8
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 1.4e-27 125.9 70 77.1
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 1.9e-27 125.6 67 74.6
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.4e-27 125.2 60 85.0
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 4.2e-27 124.4 60 81.7
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 5.5e-27 124.0 68 76.5
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 5.5e-27 124.0 69 75.4
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 5.5e-27 124.0 69 76.8
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 5.5e-27 124.0 69 76.8
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.6e-26 122.5 69 73.9
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 1.6e-26 122.5 69 75.4
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 3.5e-26 121.3 60 83.3
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 4.6e-26 120.9 59 78.0
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.6e-26 120.9 58 84.5
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 6.0e-26 120.6 69 72.5
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 7.9e-26 120.2 60 80.0
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 1.3e-25 119.4 69 73.9
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 1.3e-25 119.4 69 73.9
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.8e-25 119.0 67 73.1
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.3e-25 118.6 58 86.2
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 3.0e-25 118.2 80 63.8
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 6.7e-25 117.1 67 71.6
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-24 116.3 60 75.0
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 1.1e-24 116.3 64 76.6
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 1.5e-24 115.9 69 68.1
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 1.9e-24 115.5 61 77.0
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.9e-24 115.5 69 69.6
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 3.3e-24 114.8 67 73.1
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 7.4e-24 113.6 67 71.6
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 7.4e-24 113.6 80 61.2
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 9.6e-24 113.2 69 69.6
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 2.1e-23 112.1 67 70.1
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 2.1e-23 112.1 98 56.1
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 2.8e-23 111.7 75 65.3
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 3.7e-23 111.3 56 82.1
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.1e-22 109.8 65 73.8
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.1e-22 109.8 65 73.8
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 5.3e-22 107.5 69 69.6
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 6.9e-22 107.1 69 68.1
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.0e-21 105.5 69 66.7
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 1.3e-20 102.8 76 59.2
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 6.5e-20 100.5 57 73.7
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 3.2e-19 98.2 66 62.1
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 3.2e-19 98.2 68 60.3
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 5.5e-19 97.4 49 77.6
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 2.7e-18 95.1 75 56.0
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 1.0e-17 93.2 58 62.1
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 3.0e-17 91.7 42 88.1
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 1.5e-16 89.4 41 87.8
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.3e-14 80.9 43 76.7
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.3e-14 80.9 43 76.7
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 6.9e-14 80.5 51 64.7
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.7e-12 75.9 42 71.4
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 1.1e-11 73.2 69 50.7
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 3.2e-11 71.6 69 50.7
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 2.7e-10 68.6 34 67.6
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 6.1e-10 67.4 69 49.3
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 1.4e-09 66.2 37 73.0
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 1.1e-08 63.2 66 47.0
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 3.3e-08 61.6 30 90.0


User provided reference genes

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