Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G067600 Populus trichocarpa HOM05D006151 ORTHO05D007487 1.5e-130 469.5 246 100.0
Potri.005G192800 Populus trichocarpa HOM05D006151 ORTHO05D007487 1.4e-99 366.7 248 79.4
Manes.02G180000 Manihot esculenta HOM05D006151 ORTHO05D007487 7.2e-88 327.8 246 73.2
Thecc.08G153600 Theobroma cacao HOM05D006151 ORTHO05D007487 1.2e-74 283.9 244 68.9
Cfa018318 Carpinus fangiana HOM05D006151 ORTHO05D007487 3.2e-72 275.8 230 66.5
CANSAT25G1414 Cannabis sativa HOM05D006151 ORTHO05D007487 4.2e-72 275.4 246 62.6
TWI34G1794 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 1.6e-71 273.5 248 62.5
Atru.chr13.2098 Acer truncatum HOM05D006151 ORTHO05D007487 3.0e-70 269.2 245 63.7
Duzib116G0486 Durio zibethinus HOM05D006151 ORTHO05D007487 4.0e-70 268.9 246 62.6
COL.COLO4_04528 Corchorus olitorius HOM05D006151 ORTHO05D007487 6.8e-70 268.1 257 61.9
Cpa.g.sc21.206 Carica papaya HOM05D006151 ORTHO05D007487 2.0e-69 266.5 254 62.2
Duzib041G0750 Durio zibethinus HOM05D006151 ORTHO05D007487 2.6e-69 266.2 254 62.2
Ciclev10002306m.g Citrus clementina HOM05D006151 ORTHO05D007487 4.9e-68 261.9 250 60.8
FAN20G0746 Fragaria x ananassa HOM05D006151 ORTHO05D007487 4.9e-68 261.9 240 62.1
FAN24G0867 Fragaria x ananassa HOM05D006151 ORTHO05D007487 8.3e-68 261.2 241 61.8
RcHm_v2.0_Chr6g0275291 Rosa chinensis HOM05D006151 ORTHO05D007487 2.4e-67 259.6 238 63.0
Dinv25871 Davidia involucrata HOM05D006151 ORTHO05D007487 3.1e-67 259.2 244 61.1
FvH4_2g13650 Fragaria vesca HOM05D006151 ORTHO05D007487 3.1e-67 259.2 241 61.4
FAN15G1313 Fragaria x ananassa HOM05D006151 ORTHO05D007487 5.4e-67 258.5 241 61.8
FAN27G2560 Fragaria x ananassa HOM05D006151 ORTHO05D007487 5.4e-67 258.5 241 61.8
CiPaw.15G015800 Carya illinoinensis HOM05D006151 ORTHO05D007487 4.5e-66 255.4 238 63.0
TAR628G1632 Trochodendron aralioides HOM05D006151 ORTHO05D007487 1.0e-65 254.2 242 58.3
Lj5g0026688 Lotus japonicus HOM05D006151 ORTHO05D007487 5.0e-65 251.9 242 62.0
Duzib093G0584 Durio zibethinus HOM05D006151 ORTHO05D007487 1.1e-64 250.8 251 60.6
CSS0023884 Camellia sinensis var. sinensis HOM05D006151 ORTHO05D007487 1.2e-63 247.3 243 58.0
TAR381G1121 Trochodendron aralioides HOM05D006151 ORTHO05D007487 1.2e-63 247.3 235 56.6
Gorai.005G078700 Gossypium raimondii HOM05D006151 ORTHO05D007487 2.8e-63 246.1 226 61.9
Actinidia04761 Actinidia chinensis HOM05D006151 ORTHO05D007487 6.1e-63 245.0 225 62.7
Nitab4.5_0001062g0090 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.0e-62 244.2 214 64.0
Gohir.D02G069400 Gossypium hirsutum HOM05D006151 ORTHO05D007487 2.3e-62 243.0 226 61.5
QL02p039028 Quercus lobata HOM05D006151 ORTHO05D007487 5.2e-62 241.9 244 61.5
Gohir.D05G244900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 1.2e-61 240.7 252 58.7
Lalb_Chr06g0161651 Lupinus albus HOM05D006151 ORTHO05D007487 2.6e-61 239.6 239 58.6
GSVIVG01034539001 Vitis vinifera HOM05D006151 ORTHO05D007487 3.4e-61 239.2 244 57.0
Prupe.8G031400 Prunus persica HOM05D006151 ORTHO05D007487 4.4e-61 238.8 253 58.1
Peaxi162Scf00599g00048 Petunia axillaris HOM05D006151 ORTHO05D007487 5.7e-61 238.4 245 56.7
Glyma.20G168200 Glycine max HOM05D006151 ORTHO05D007487 7.5e-61 238.0 239 58.6
Eucgr.F04235 Eucalyptus grandis HOM05D006151 ORTHO05D007487 9.8e-61 237.7 226 57.1
Nitab4.5_0009071g0020 Nicotiana tabacum HOM05D006151 ORTHO05D007487 2.9e-60 236.1 204 63.7
Phvul.007G081100 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 4.9e-60 235.3 239 58.2
CAN.G268.27 Capsicum annuum HOM05D006151 ORTHO05D007487 6.4e-60 235.0 231 58.9
Dinv41078 Davidia involucrata HOM05D006151 ORTHO05D007487 6.4e-60 235.0 251 55.8
Gohir.A02G063800 Gossypium hirsutum HOM05D006151 ORTHO05D007487 8.3e-60 234.6 210 62.9
MD05G1026900 Malus domestica HOM05D006151 ORTHO05D007487 3.2e-59 232.6 253 56.5
MD10G1026200 Malus domestica HOM05D006151 ORTHO05D007487 3.2e-59 232.6 252 55.2
DCAR_001140 Daucus carota HOM05D006151 ORTHO05D007487 4.1e-59 232.3 239 56.5
arahy.Tifrunner.gnm1.ann1.2F6CI2 Arachis hypogaea HOM05D006151 ORTHO05D007487 5.4e-59 231.9 244 58.2
PSO447G0272 Papaver somniferum HOM05D006151 ORTHO05D007487 7.0e-59 231.5 246 52.8
PSO210G3290 Papaver somniferum HOM05D006151 ORTHO05D007487 1.6e-58 230.3 246 52.8
ClCG08G007050 Citrullus lanatus HOM05D006151 ORTHO05D007487 2.7e-58 229.6 245 52.7
Nn1g06074 Nelumbo nucifera HOM05D006151 ORTHO05D007487 2.7e-58 229.6 253 52.2
Cc10_g14430 Coffea canephora HOM05D006151 ORTHO05D007487 3.5e-58 229.2 236 55.5
Medtr1g098580 Medicago truncatula HOM05D006151 ORTHO05D007487 5.9e-58 228.4 234 61.1
Rhsim11G0083500 Rhododendron simsii HOM05D006151 ORTHO05D007487 7.8e-58 228.0 224 58.9
Sed0016357 Sechium edule HOM05D006151 ORTHO05D007487 7.8e-58 228.0 225 56.0
Manes.18G092600 Manihot esculenta HOM05D006151 ORTHO05D007487 2.3e-57 226.5 225 60.0
MELO3C008336.2 Cucumis melo HOM05D006151 ORTHO05D007487 3.9e-57 225.7 242 54.5
Migut.C00998 Erythranthe guttata HOM05D006151 ORTHO05D007487 1.1e-56 224.2 250 55.2
Glyma.10G223700 Glycine max HOM05D006151 ORTHO05D007487 1.5e-56 223.8 229 57.2
Hund26694 Selenicereus undatus HOM05D006151 ORTHO05D007487 1.5e-56 223.8 216 56.0
Solyc04g071500.4 Solanum lycopersicum HOM05D006151 ORTHO05D007487 1.5e-56 223.8 215 59.5
MSTRG.1087 Avicennia marina HOM05D006151 ORTHO05D007487 1.9e-56 223.4 245 55.1
Sopen04g027470 Solanum pennellii HOM05D006151 ORTHO05D007487 2.5e-56 223.0 208 61.1
Sp1g18760 Schrenkiella parvula HOM05D006151 ORTHO05D007487 3.3e-56 222.6 239 53.6
Gorai.009G254700 Gossypium raimondii HOM05D006151 ORTHO05D007487 5.6e-56 221.9 252 54.8
Hma1.2p1_0105F.1_g050630 Hydrangea macrophylla HOM05D006151 ORTHO05D007487 7.3e-56 221.5 246 54.9
VMungo0720G2232 Vigna mungo HOM05D006151 ORTHO05D007487 7.3e-56 221.5 217 60.8
TWI60G0448 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 1.2e-55 220.7 243 55.6
Nn5g28758 Nelumbo nucifera HOM05D006151 ORTHO05D007487 2.8e-55 219.5 232 51.3
PGSC0003DMG400024091 Solanum tuberosum HOM05D006151 ORTHO05D007487 3.6e-55 219.2 225 56.0
Gohir.A05G243900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 1.4e-54 217.2 260 54.6
Oeu046040.1 Olea europaea HOM05D006151 ORTHO05D007487 1.4e-54 217.2 247 54.7
Psat6g192320 Pisum sativum HOM05D006151 ORTHO05D007487 1.5e-53 213.8 246 54.1
PGR044G2378 Punica granatum HOM05D006151 ORTHO05D007487 2.0e-53 213.4 238 49.2
PGR100G0011 Punica granatum HOM05D006151 ORTHO05D007487 2.0e-53 213.4 238 49.2
BcaB03g14281 Brassica carinata HOM05D006151 ORTHO05D007487 2.6e-53 213.0 242 52.5
SGA_v2.0_scaffold24G10349 Striga asiatica HOM05D000219 ORTHO05D000226 4.4e-53 212.2 205 57.6
vmacro01457 Vaccinium macrocarpon HOM05D006151 ORTHO05D007487 1.3e-52 210.7 222 56.8
AT1G21090 Arabidopsis thaliana HOM05D006151 ORTHO05D007487 1.7e-52 210.3 235 52.3
THA.LOC104813720 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 6.4e-52 208.4 229 52.0
Carub.0001s2055 Capsella rubella HOM05D006151 ORTHO05D007487 1.1e-51 207.6 246 50.4
AUR62013592 Chenopodium quinoa HOM05D006151 ORTHO05D007487 1.9e-51 206.8 240 50.0
BcaB07g32102 Brassica carinata HOM05D006151 ORTHO05D007487 2.4e-51 206.5 237 50.6
CARHR021560 Cardamine hirsuta HOM05D006151 ORTHO05D007487 2.4e-51 206.5 236 51.3
TPR.G17045 Trifolium pratense HOM05D006151 ORTHO05D007487 4.1e-51 205.7 247 55.5
AL1G34140 Arabidopsis lyrata HOM05D006151 ORTHO05D007487 7.0e-51 204.9 236 51.7
PGR080G0005 Punica granatum HOM05D006151 ORTHO05D007487 2.0e-50 203.4 222 49.1
VMungo0464G0684 Vigna mungo HOM05D006151 ORTHO05D007487 7.8e-50 201.4 218 52.8
Lsat_1_v5_gn_6_100560 Lactuca sativa HOM05D006151 ORTHO05D007487 2.3e-49 199.9 267 49.8
AUR62026702 Chenopodium quinoa HOM05D006151 ORTHO05D007487 3.0e-49 199.5 219 51.1
THA.LOC104812035 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 3.0e-49 199.5 219 51.1
HanXRQChr05g0161971 Helianthus annuus HOM05D006151 ORTHO05D007487 3.9e-49 199.1 272 45.6
BraA06t24819Z Brassica rapa HOM05D006151 ORTHO05D007487 5.0e-49 198.7 242 49.6
C05p19820 Brassica napus HOM05D006151 ORTHO05D007487 8.6e-49 198.0 242 49.6
BolC5t30681H Brassica oleracea HOM05D006151 ORTHO05D007487 8.6e-49 198.0 242 49.6
Glyma.16G166000 Glycine max HOM05D006151 ORTHO05D007487 1.5e-48 197.2 242 52.1
CsaV3_6G005160 Cucumis sativus L. HOM05D006151 ORTHO05D007487 2.5e-48 196.4 225 50.7
A06p17160 Brassica napus HOM05D006151 ORTHO05D007487 4.3e-48 195.7 240 49.2
Aqoxy5G02075 Aquilegia oxysepala HOM05D006151 ORTHO05D007487 5.6e-48 195.3 219 53.4
Peaxi162Scf01294g00115 Petunia axillaris HOM05D006151 ORTHO05D007487 2.8e-47 193.0 237 49.4
Sed0009804 Sechium edule HOM05D006151 ORTHO05D007487 1.4e-46 190.7 253 48.2
Ca_10677_v3 Cicer arietinum L. HOM05D006151 ORTHO05D007487 4.0e-46 189.1 218 56.0
ECA246G2194 Erigeron canadensis HOM05D006151 ORTHO05D007487 8.9e-46 188.0 283 45.2
Nitab4.5_0002487g0030 Nicotiana tabacum HOM05D006151 ORTHO05D007487 3.4e-45 186.0 201 58.2
Phvul.004G093600 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 1.7e-44 183.7 218 49.5
Thhalv10008611m.g Eutrema salsugineum HOM05D006151 ORTHO05D007487 2.9e-44 183.0 237 46.4
Aa31LG7G5240 Aethionema arabicum HOM05D006151 ORTHO05D007487 3.2e-43 179.5 189 52.4
MBI09_g40713_MAGBIO Magnolia biondii HOM05D006151 ORTHO05D007487 9.2e-43 177.9 224 49.1
EL10Ac1g01556 Beta vulgaris HOM05D006151 ORTHO05D007487 1.3e-41 174.1 197 50.8
arahy.Tifrunner.gnm1.ann1.5IW37T Arachis hypogaea HOM05D006151 ORTHO05D007487 8.6e-41 171.4 244 47.1
Hund17438 Selenicereus undatus HOM05D006151 ORTHO05D007487 1.9e-40 170.2 239 41.0
BcaC06g34887 Brassica carinata HOM05D006151 ORTHO05D007487 2.1e-39 166.8 182 52.7
BraA07t29267Z Brassica rapa HOM05D006151 ORTHO05D007487 1.4e-38 164.1 189 51.3
A07p15290 Brassica napus HOM05D006151 ORTHO05D007487 1.8e-38 163.7 189 51.3
BolC7t42748H Brassica oleracea HOM05D006151 ORTHO05D007487 1.8e-38 163.7 194 51.0
C07p22470 Brassica napus HOM05D006151 ORTHO05D007487 8.9e-38 161.4 194 50.5
BcaC05g26017 Brassica carinata HOM05D006151 ORTHO05D007487 1.5e-37 160.6 202 48.5
Actinidia29533 Actinidia chinensis HOM05D006151 ORTHO05D007487 2.6e-37 159.8 150 59.3
unitig_748.g7705 Utricularia gibba HOM05D006151 ORTHO05D007487 2.4e-35 153.3 219 44.3
Nitab4.5_0010143g0010 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.0e-33 147.9 204 50.5
Ah.05g167920 Amaranthus hybridus HOM05D006151 ORTHO05D007487 5.6e-32 142.1 214 42.1
Lj7C374T8 Lonicera japonica HOM05D006151 ORTHO05D007487 8.9e-30 134.8 155 54.2
CDE08G0602 Ceratophyllum demersum HOM05D006151 ORTHO05D007487 1.3e-23 114.4 210 40.5
HPP92_004418 Vanilla planifolia HOM05D006151 ORTHO05D007487 6.9e-22 108.6 215 37.2
Sc02g0004030 Simmondsia chinensis HOM05D006151 ORTHO05D007487 4.2e-19 99.4 165 46.1
Peaxi162Scf00476g00615 Petunia axillaris HOM05D002901 ORTHO05D003183 1.8e-17 94.0 79 62.0
Nn1g02131 Nelumbo nucifera HOM05D006151 ORTHO05D007487 9.9e-13 78.2 177 33.9
GSVIVG01026618001 Vitis vinifera HOM05D006151 ORTHO05D007487 3.0e-09 66.6 137 35.8
AUR62044379 Chenopodium quinoa HOM05D006151 ORTHO05D007487 1.6e-07 60.8 36 77.8


User provided reference genes

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