Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 2306.6 1172 100.0
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 0.0e+00 2120.9 1173 92.4
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 2118.2 1230 89.5
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 0.0e+00 2062.3 1227 86.6
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 0.0e+00 1993.0 1173 87.1
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1958.0 1169 86.2
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 0.0e+00 1957.6 1169 86.2
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 0.0e+00 1953.7 1172 85.7
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 0.0e+00 1951.4 1172 85.4
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 0.0e+00 1946.0 1172 85.4
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1941.4 1173 85.3
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1934.8 1180 84.7
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1920.6 1172 84.0
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1919.1 1173 84.7
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 0.0e+00 1913.7 1171 84.6
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 0.0e+00 1911.7 1180 84.4
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 0.0e+00 1907.1 1172 83.8
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1900.9 1173 84.0
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1900.9 1173 84.0
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1896.3 1172 83.0
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1894.8 1173 83.8
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1894.8 1168 83.2
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1892.5 1218 81.7
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1889.4 1214 82.0
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1888.6 1218 81.6
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 0.0e+00 1882.8 1218 81.5
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 0.0e+00 1877.8 1169 83.1
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 0.0e+00 1874.4 1172 82.3
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1872.4 1172 83.1
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1868.6 1172 82.6
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1866.7 1172 82.0
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1858.2 1178 81.8
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1853.6 1203 80.9
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 0.0e+00 1852.4 1172 81.7
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1852.0 1195 80.9
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 0.0e+00 1838.9 1172 80.5
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1838.2 1173 81.5
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 0.0e+00 1837.8 1174 82.2
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 0.0e+00 1837.4 1173 80.8
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1837.0 1173 81.2
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 0.0e+00 1834.7 1176 81.0
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1834.3 1174 81.0
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 0.0e+00 1832.8 1173 81.0
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 0.0e+00 1826.6 1173 80.8
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1824.3 1208 78.7
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1820.4 1208 78.6
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1813.9 1174 80.3
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 0.0e+00 1811.6 1212 78.9
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1805.0 1172 80.1
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 0.0e+00 1804.3 1209 78.6
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1800.4 1170 80.2
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 0.0e+00 1798.5 1173 79.4
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1795.0 1172 79.4
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 0.0e+00 1786.2 1204 77.9
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1785.0 1171 78.8
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1784.6 1171 79.2
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 0.0e+00 1784.2 1175 79.7
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 0.0e+00 1771.5 1231 75.9
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1771.5 1177 78.5
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 0.0e+00 1767.7 1174 79.5
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1767.3 1170 78.1
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1766.5 1168 78.2
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 0.0e+00 1766.1 1172 77.9
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 0.0e+00 1758.8 1174 77.9
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1757.7 1173 78.8
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 0.0e+00 1756.1 1173 77.7
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1754.6 1171 77.3
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1753.8 1171 77.2
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 0.0e+00 1753.8 1173 77.9
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1752.6 1170 77.4
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 0.0e+00 1751.9 1176 77.5
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1751.1 1158 77.9
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 0.0e+00 1748.0 1230 75.5
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 0.0e+00 1748.0 1174 77.6
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 0.0e+00 1748.0 1171 77.5
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1744.2 1173 77.0
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 0.0e+00 1743.8 1172 77.3
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 0.0e+00 1743.0 1101 81.9
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 0.0e+00 1739.5 1173 77.2
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 0.0e+00 1738.4 1175 76.9
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1738.0 1173 77.2
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 0.0e+00 1736.9 1180 76.9
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 0.0e+00 1734.9 1176 76.4
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1734.2 1229 74.9
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1734.2 1202 76.0
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1733.0 1173 77.0
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1732.6 1210 75.4
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 0.0e+00 1727.2 1176 75.9
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 0.0e+00 1726.8 1175 76.5
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 0.0e+00 1725.7 1177 76.7
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 0.0e+00 1722.2 1176 75.9
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 0.0e+00 1720.7 1174 75.8
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 0.0e+00 1714.5 1178 76.1
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 0.0e+00 1714.1 1177 75.9
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 0.0e+00 1713.0 1175 76.4
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1711.8 1192 75.3
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 0.0e+00 1711.0 1151 77.6
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1706.4 1172 77.0
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 0.0e+00 1697.9 1183 75.4
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1694.1 1179 75.7
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 0.0e+00 1690.2 1170 75.6
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 0.0e+00 1689.5 1072 81.5
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 0.0e+00 1688.3 1177 76.1
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 0.0e+00 1686.0 1180 75.6
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 0.0e+00 1685.6 1173 76.3
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 0.0e+00 1669.4 1176 75.4
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 0.0e+00 1669.4 1174 74.4
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1663.3 1187 74.9
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1640.2 1173 74.3
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 0.0e+00 1636.3 1192 73.7
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 0.0e+00 1629.0 1205 71.4
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 0.0e+00 1619.0 1149 74.1
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 0.0e+00 1595.9 1182 71.6
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1590.9 1175 71.4
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 0.0e+00 1590.5 1176 71.7
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 0.0e+00 1575.8 1111 75.8
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 0.0e+00 1552.0 946 83.8
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1550.0 1171 69.9
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 0.0e+00 1538.9 1176 69.0
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 0.0e+00 1524.2 946 83.1
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 0.0e+00 1494.2 1035 77.2
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1489.2 1172 69.0
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 0.0e+00 1453.3 1177 68.0
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 0.0e+00 1396.7 975 75.8
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 0.0e+00 1374.8 946 76.5
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 0.0e+00 1295.0 889 75.8
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 0.0e+00 1286.2 960 72.3
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 0.0e+00 1284.2 976 71.8
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 0.0e+00 1265.8 968 71.7
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 0.0e+00 1254.2 1170 60.1
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 0.0e+00 1220.7 815 79.1
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 0.0e+00 1195.3 803 78.1
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 0.0e+00 1182.9 813 77.1
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 0.0e+00 1171.4 808 76.7
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 0.0e+00 1081.2 724 78.6
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 1.3e-309 1066.6 1168 55.6
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 1.8e-285 986.5 1173 48.2
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.4e-282 976.9 1206 47.6
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 7.7e-281 971.1 539 90.4
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 1.6e-278 963.4 603 83.3
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.3e-256 889.8 714 68.1
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 5.3e-189 666.0 431 78.7
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 1.2e-167 595.1 362 83.1
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 2.0e-148 531.2 898 41.5
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 2.0e-143 514.6 306 83.0
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 1.8e-136 491.5 307 79.8
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 5.2e-136 490.0 308 79.5
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 7.6e-127 459.5 628 47.0
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 6.0e-124 449.9 807 37.3
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.7e-123 448.4 286 82.9
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 1.2e-108 399.1 1295 29.1
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 9.9e-103 379.4 227 80.6
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 1.3e-89 335.9 510 42.9
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 1.1e-85 322.8 197 79.7
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 6.1e-84 317.0 182 85.7
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 1.8e-83 315.5 207 78.3
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 2.5e-82 311.6 278 64.4
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 1.1e-74 286.2 188 73.4
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 1.0e-67 263.1 257 60.7
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.7e-65 255.8 144 87.5
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 2.8e-65 255.0 186 72.6
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 3.8e-62 244.6 211 64.5
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 2.1e-52 212.2 174 64.9
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 9.8e-50 203.4 118 88.1
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 2.8e-49 201.8 130 80.0
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 3.6e-44 184.9 125 74.4
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 5.6e-37 161.0 92 90.2
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 3.9e-30 138.3 86 80.2
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 5.0e-30 137.9 91 74.7
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 5.0e-30 137.9 91 74.7
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 1.7e-22 112.8 78 74.4
Nn3g20398 Nelumbo nucifera HOM05D003952 ORTHO05D005083 1.6e-20 106.3 82 69.5
PGSC0003DMG400001110 Solanum tuberosum HOM05D003952 ORTHO05D005083 1.2e-18 100.1 81 59.3
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 8.3e-17 94.0 106 48.1
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 8.3e-17 94.0 59 78.0
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 9.2e-16 90.5 74 59.5
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 7.8e-15 87.4 132 44.7


User provided reference genes

Program Settings