Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.5e-139 499.6 259 100.0
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 3.7e-111 405.2 243 84.4
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 1.1e-94 350.5 238 71.0
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 5.4e-94 348.2 236 75.4
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 6.0e-93 344.7 236 71.6
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 3.9e-92 342.0 240 70.8
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.6e-90 336.7 237 69.6
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 2.1e-90 336.3 249 69.5
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 4.7e-90 335.1 240 70.4
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 2.4e-89 332.8 240 69.6
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 6.9e-89 331.3 240 71.2
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 9.0e-89 330.9 240 70.4
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 4.4e-88 328.6 236 69.5
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 9.9e-88 327.4 240 69.2
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.3e-87 327.0 221 75.1
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 2.2e-87 326.2 240 69.2
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 2.9e-87 325.9 236 69.5
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 2.9e-87 325.9 240 68.3
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 3.8e-87 325.5 249 63.9
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 6.4e-87 324.7 240 69.2
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 1.9e-86 323.2 252 63.9
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.4e-86 322.8 252 65.1
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 3.2e-86 322.4 249 63.1
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.2e-86 322.4 240 69.2
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 5.4e-86 321.6 250 64.4
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 7.1e-86 321.2 238 64.7
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 2.1e-85 319.7 240 67.1
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 2.1e-85 319.7 240 67.5
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 2.1e-85 319.7 242 64.9
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 2.1e-85 319.7 233 68.2
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 4.6e-85 318.5 236 68.6
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.7e-84 316.6 244 65.2
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 3.9e-84 315.5 247 64.0
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 5.1e-84 315.1 247 66.4
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.1e-83 313.9 207 82.1
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.3e-82 310.5 240 63.8
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 1.3e-82 310.5 240 63.8
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.6e-82 308.9 252 61.1
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 6.2e-82 308.1 240 65.0
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 5.3e-81 305.1 237 64.1
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 5.3e-81 305.1 232 65.5
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 9.0e-81 304.3 250 61.2
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 2.6e-80 302.8 210 72.9
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 7.6e-80 301.2 232 64.2
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 7.6e-80 301.2 247 61.5
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 1.7e-79 300.1 236 62.7
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 4.9e-79 298.5 257 59.1
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 3.5e-77 292.4 240 60.4
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 2.3e-76 289.7 237 61.6
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 1.5e-75 287.0 264 58.0
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 4.8e-74 282.0 213 67.1
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.2e-74 281.6 234 62.0
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 6.2e-74 281.6 212 66.0
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 1.4e-73 280.4 254 57.1
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 5.3e-73 278.5 198 68.7
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 5.3e-73 278.5 210 66.7
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 5.3e-73 278.5 226 64.6
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 7.6e-72 274.6 195 70.3
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.3e-71 273.9 243 57.2
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.8e-71 272.3 265 58.1
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 1.2e-69 267.3 228 59.2
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 1.0e-68 264.2 235 56.2
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 1.1e-67 260.8 238 58.4
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 2.5e-67 259.6 197 71.1
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 5.6e-67 258.5 228 56.6
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 9.6e-67 257.7 294 50.3
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 1.6e-66 256.9 252 53.2
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 1.6e-66 256.9 197 64.0
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 2.8e-66 256.1 225 56.9
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 2.4e-65 253.1 233 54.9
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 9.0e-65 251.1 238 54.6
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 9.0e-65 251.1 238 54.2
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.2e-64 250.8 234 54.3
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 1.2e-64 250.8 198 64.6
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 1.5e-64 250.4 233 55.4
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 2.6e-64 249.6 235 54.5
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 5.8e-64 248.4 238 53.8
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 5.8e-64 248.4 238 53.8
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 1.3e-63 247.3 238 53.4
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 1.3e-63 247.3 238 53.4
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 8.4e-63 244.6 194 62.9
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 1.4e-62 243.8 238 53.4
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 2.5e-62 243.0 235 53.2
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 1.2e-61 240.7 238 52.5
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 7.9e-61 238.0 227 58.6
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 1.3e-60 237.3 238 52.1
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 1.3e-60 237.3 183 62.3
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 3.9e-60 235.7 229 54.1
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.1e-59 234.2 230 53.5
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 3.1e-57 226.1 233 51.9
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.0e-56 223.4 240 51.7
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 5.9e-56 221.9 235 51.9
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 5.0e-55 218.8 198 53.0
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 4.2e-54 215.7 241 49.8
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 3.6e-53 212.6 272 47.8
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 2.3e-52 209.9 237 51.5
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 1.1e-51 207.6 179 61.5
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 5.7e-51 205.3 241 44.8
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 9.7e-51 204.5 245 46.5
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 6.3e-50 201.8 233 46.4
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 5.3e-49 198.7 238 46.2
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 1.2e-48 197.6 165 60.0
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.2e-48 197.6 233 45.9
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 7.9e-45 184.9 240 43.8
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 4.1e-41 172.6 244 41.0
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 4.1e-41 172.6 234 43.2
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 4.5e-40 169.1 232 39.7
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 1.4e-38 164.1 229 44.1
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 2.5e-38 163.3 240 40.4
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 6.7e-36 155.2 203 42.9
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 2.0e-35 153.7 105 69.5
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 1.7e-34 150.6 155 50.3
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 1.4e-33 147.5 150 51.3
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 4.1e-33 146.0 229 38.9
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 7.0e-33 145.2 115 59.1
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 9.1e-33 144.8 105 64.8
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.3e-31 141.0 180 47.8
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 2.7e-29 133.3 106 62.3
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 2.0e-27 127.1 209 39.7
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 1.7e-26 124.0 106 58.5
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 7.0e-25 118.6 109 52.3
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 9.1e-25 118.2 105 54.3
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 3.2e-22 109.8 105 50.5
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 3.6e-21 106.3 137 46.7
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 1.4e-20 104.4 133 47.4
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 8.8e-20 101.7 110 50.0
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 1.7e-18 97.4 107 46.7
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 2.2e-18 97.1 115 45.2
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 8.3e-18 95.1 163 41.1
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 2.0e-16 90.5 75 56.0
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.8e-12 75.5 68 50.0
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 3.7e-10 69.7 78 48.7
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 4.1e-09 66.2 113 35.4
Lsat_1_v5_gn_1_83821 Lactuca sativa HOM05D005414 ORTHO05D006844 2.0e-08 63.9 182 30.2
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 5.9e-08 62.4 112 34.8
Lsat_1_v5_gn_3_108880 Lactuca sativa HOM05D002370 ORTHO05D022851 5.9e-08 62.4 91 40.7
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 7.8e-08 62.0 145 29.7
Pp3c18_14820 Physcomitrium patens HOM05D005414 ORTHO05D006844 1.5e-06 57.8 42 61.9
Lsat_1_v5_gn_4_15661 Lactuca sativa HOM05D001315 ORTHO05D004199 1.9e-06 57.4 92 42.4
Lsat_1_v5_gn_5_58841 Lactuca sativa HOM05D001315 ORTHO05D004199 1.9e-06 57.4 92 42.4
Lsat_1_v5_gn_6_15761 Lactuca sativa HOM05D001315 ORTHO05D004199 1.9e-06 57.4 92 42.4


User provided reference genes

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