Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G058800 Populus trichocarpa HOM05D007704 ORTHO05D009758 6.1e-152 540.8 275 100.0
Sabra02G0047700 Salix brachista HOM05D007704 ORTHO05D009758 3.8e-130 468.4 313 78.9
Atru.chr6.2068_Atru.chr6.2069 Acer truncatum HOM05D007704 ORTHO05D009758 1.1e-79 300.8 262 59.5
Ciclev10032332m.g Citrus clementina HOM05D007704 ORTHO05D009758 1.2e-78 297.4 258 61.6
TWI59G0036 Tripterygium wilfordii HOM05D007704 ORTHO05D009758 2.3e-74 283.1 275 60.0
QL08p044652 Quercus lobata HOM05D007704 ORTHO05D009758 8.6e-74 281.2 300 52.3
COL.COLO4_08458 Corchorus olitorius HOM05D007704 ORTHO05D009758 2.1e-67 260.0 267 55.8
GSVIVG01020855001 Vitis vinifera HOM05D007704 ORTHO05D009758 3.3e-65 252.7 292 48.6
Thecc.01G163800 Theobroma cacao HOM05D007704 ORTHO05D009758 2.1e-64 250.0 271 53.9
TAR626G0172 Trochodendron aralioides HOM05D007704 ORTHO05D009758 1.7e-61 240.4 277 50.9
Gorai.012G040100 Gossypium raimondii HOM05D007704 ORTHO05D009758 1.9e-60 236.9 258 51.2
Gohir.A05G379900 Gossypium hirsutum HOM05D007704 ORTHO05D009758 3.2e-60 236.1 258 51.6
Gohir.D04G035566 Gossypium hirsutum HOM05D007704 ORTHO05D009758 5.4e-60 235.3 258 50.8
Nn3g20648 Nelumbo nucifera HOM05D007704 ORTHO05D009758 1.0e-58 231.1 258 52.7
MSTRG.15037 Avicennia marina HOM05D007704 ORTHO05D009758 2.1e-48 196.8 270 44.4
Aqoxy4G00112 Aquilegia oxysepala HOM05D007704 ORTHO05D009758 3.2e-44 183.0 270 43.7
Peaxi162Scf00789g00013 Petunia axillaris HOM05D007704 ORTHO05D009758 3.2e-44 183.0 253 44.3
Cc05_g09660 Coffea canephora HOM05D007704 ORTHO05D009758 1.3e-42 177.6 280 42.5
Prupe.3G174900 Prunus persica HOM05D007704 ORTHO05D009758 1.8e-42 177.2 163 58.9
Sc16g0011630 Simmondsia chinensis HOM05D007704 ORTHO05D009758 2.3e-42 176.8 271 41.0
Migut.M00569 Erythranthe guttata HOM05D007704 ORTHO05D009758 7.4e-41 171.8 282 40.8
AUR62000092 Chenopodium quinoa HOM05D007704 ORTHO05D009758 9.6e-41 171.4 283 40.6
Haze_13518 Corylus avellana HOM05D007704 ORTHO05D009758 9.6e-41 171.4 185 54.1
SGA_v2.0_scaffold70G23621 Striga asiatica HOM05D007704 ORTHO05D009758 9.6e-41 171.4 268 41.0
MD17G1137700 Malus domestica HOM05D007704 ORTHO05D009758 1.1e-39 167.9 182 52.7
Sopen12g006550 Solanum pennellii HOM05D007704 ORTHO05D009758 1.8e-39 167.2 265 41.5
MBI07_g07812_MAGBIO Magnolia biondii HOM05D007704 ORTHO05D009758 5.3e-39 165.6 275 40.7
Solyc12g011190.2 Solanum lycopersicum HOM05D007704 ORTHO05D009758 5.3e-39 165.6 265 41.1
Hund07540 Selenicereus undatus HOM05D008449 ORTHO05D010615 2.6e-38 163.3 280 38.9
EL10Ac4g10303 Beta vulgaris HOM05D007704 ORTHO05D009758 3.4e-38 162.9 280 39.3
FvH4_6g38482 Fragaria vesca HOM05D007704 ORTHO05D009758 7.6e-38 161.8 178 52.8
FAN14G3331 Fragaria x ananassa HOM05D007704 ORTHO05D009758 7.6e-38 161.8 178 52.8
ATR0757G094 Amborella trichopoda HOM05D007704 ORTHO05D009758 1.3e-37 161.0 291 36.8
PGSC0003DMG400007847 Solanum tuberosum HOM05D007704 ORTHO05D009758 1.3e-37 161.0 266 41.0
FAN09G1582 Fragaria x ananassa HOM05D007704 ORTHO05D009758 6.5e-37 158.7 178 52.2
FvH4_6g38470 Fragaria vesca HOM05D007704 ORTHO05D009758 8.4e-37 158.3 178 51.1
Ah.06g193590 Amaranthus hybridus HOM05D003002 ORTHO05D003583 1.1e-36 157.9 279 39.4
FAN02G0747 Fragaria x ananassa HOM05D007704 ORTHO05D009758 1.1e-36 157.9 166 53.0
RcHm_v2.0_Chr2g0151721 Rosa chinensis HOM05D007704 ORTHO05D009758 1.4e-36 157.5 178 50.6
CDE09G0200 Ceratophyllum demersum HOM05D007704 ORTHO05D009758 2.7e-35 153.3 244 38.1
Glyma.08G308800 Glycine max HOM05D007704 ORTHO05D009758 1.0e-34 151.4 188 48.4
Nitab4.5_0001232g0110 Nicotiana tabacum HOM05D007704 ORTHO05D009758 1.3e-34 151.0 266 38.0
TPR.G16762 Trifolium pratense HOM05D007704 ORTHO05D009758 2.3e-34 150.2 187 48.1
arahy.Tifrunner.gnm1.ann1.I86J5P Arachis hypogaea HOM05D007704 ORTHO05D009758 3.7e-32 142.9 188 46.3
Ca_14608_v3 Cicer arietinum L. HOM05D007704 ORTHO05D009758 1.1e-31 141.4 189 46.6
AUR62019264 Chenopodium quinoa HOM05D007704 ORTHO05D009758 1.8e-31 140.6 327 33.3
Psat0s3897g0040 Pisum sativum HOM05D007704 ORTHO05D009758 5.3e-31 139.0 190 44.2
VMungo0540G0710 Vigna mungo HOM05D007704 ORTHO05D009758 5.3e-31 139.0 185 45.9
arahy.Tifrunner.gnm1.ann1.Q0GQHR Arachis hypogaea HOM05D007704 ORTHO05D009758 1.2e-30 137.9 188 45.7
Cpa.g.sc50.98 Carica papaya HOM05D007704 ORTHO05D009758 1.7e-29 134.0 160 43.8
Phvul.006G032200 Phaseolus vulgaris HOM05D007704 ORTHO05D009758 1.7e-29 134.0 187 44.4
Medtr3g047590 Medicago truncatula HOM05D007704 ORTHO05D009758 5.0e-29 132.5 188 44.1
Os01g0246500 Oryza sativa ssp. japonica HOM05D007704 ORTHO05D009758 1.9e-28 130.6 282 33.7
PGR042G3448 Punica granatum HOM05D007704 ORTHO05D009758 1.6e-27 127.5 178 46.6
unitig_85.g27396 Utricularia gibba HOM05D007704 ORTHO05D009758 2.1e-27 127.1 251 35.5
Glyma.18G107800 Glycine max HOM05D007704 ORTHO05D009758 1.8e-26 124.0 188 42.0
Zm00001eb118790 Zea mays HOM05D007704 ORTHO05D009758 5.1e-26 122.5 282 33.0
Eucgr.A01992 Eucalyptus grandis HOM05D007704 ORTHO05D009758 6.7e-26 122.1 192 40.1
HPP92_003909 Vanilla planifolia HOM05D007704 ORTHO05D009758 9.7e-25 118.2 262 35.5
FAN05G1345 Fragaria x ananassa HOM05D007704 ORTHO05D009758 1.7e-24 117.5 178 42.1
Sed0015338 Sechium edule HOM05D007704 ORTHO05D009758 2.8e-24 116.7 162 43.8
THA.LOC104800828 Tarenaya hassleriana HOM05D007704 ORTHO05D009758 4.1e-23 112.8 158 43.7
DCAR_013319 Daucus carota HOM05D007704 ORTHO05D009758 5.3e-23 112.5 219 37.4
Lj6g0009873 Lotus japonicus HOM05D007704 ORTHO05D009758 1.0e-21 108.2 233 34.3
Aqoxy4G03087 Aquilegia oxysepala HOM05D007704 ORTHO05D009758 3.2e-20 103.2 74 63.5
Gohir.D03G060100 Gossypium hirsutum HOM05D007704 ORTHO05D009758 1.6e-19 100.9 94 52.1
BolC8t52645H Brassica oleracea HOM05D000230 ORTHO05D000176 4.7e-19 99.4 167 35.9
Gorai.003G063900 Gossypium raimondii HOM05D007704 ORTHO05D009758 1.4e-18 97.8 94 52.1
C08p51180 Brassica napus HOM05D007704 ORTHO05D009758 5.1e-18 95.9 143 38.5
A09p66950 Brassica napus HOM05D000230 ORTHO05D000176 6.7e-18 95.5 167 35.9
BraA09t42030Z Brassica rapa HOM05D000230 ORTHO05D000176 6.7e-18 95.5 167 35.9
BcaC07g42062 Brassica carinata HOM05D007704 ORTHO05D009758 1.1e-17 94.7 143 42.7
CAN.G164.19 Capsicum annuum HOM05D007704 ORTHO05D009758 1.1e-17 94.7 77 59.7
AT1G06500 Arabidopsis thaliana HOM05D007704 ORTHO05D009758 3.3e-17 93.2 165 35.8
CARHR006110 Cardamine hirsuta HOM05D007704 ORTHO05D009758 5.7e-17 92.4 164 34.8
Carub.0001s0586 Capsella rubella HOM05D007704 ORTHO05D009758 7.4e-17 92.0 164 36.0
Eucgr.A02009 Eucalyptus grandis HOM05D007704 ORTHO05D009758 1.3e-16 91.3 154 34.4
Eucgr.A01996 Eucalyptus grandis HOM05D007704 ORTHO05D009758 2.2e-16 90.5 154 35.7
AL1G16520 Arabidopsis lyrata HOM05D007704 ORTHO05D009758 6.3e-16 89.0 168 33.9
Sp1g05260 Schrenkiella parvula HOM05D007704 ORTHO05D009758 1.4e-15 87.8 143 39.2
THA.LOC104827393 Tarenaya hassleriana HOM05D007704 ORTHO05D009758 1.4e-15 87.8 132 43.9
Thhalv10009066m.g Eutrema salsugineum HOM05D007704 ORTHO05D009758 5.3e-15 85.9 179 35.2
Mapoly0023s0099 Marchantia polymorpha HOM05D007704 ORTHO05D009758 7.0e-15 85.5 133 39.8
CAN.G164.20 Capsicum annuum HOM05D007704 ORTHO05D009758 1.2e-14 84.7 150 38.7
SEGI_16323 Sequoiadendron giganteum HOM05D007704 ORTHO05D009758 7.7e-14 82.0 192 32.8
AagrBONN_evm.TU.Sc2ySwM_344.3472 Anthoceros agrestis HOM05D007704 ORTHO05D009758 1.3e-13 81.3 243 32.9
ClCG09G022520 Citrullus lanatus HOM05D007704 ORTHO05D009758 4.2e-12 76.3 127 40.2
Pp3c17_13710 Physcomitrium patens HOM05D007704 ORTHO05D009758 9.4e-12 75.1 207 28.0
HPP92_003904 Vanilla planifolia HOM05D007704 ORTHO05D009758 9.4e-12 75.1 78 51.3
Aa31LG1G7580 Aethionema arabicum HOM05D007704 ORTHO05D009758 6.7e-10 68.9 151 33.1
Gorai.012G016100 Gossypium raimondii HOM05D018944 ORTHO05D047120 4.8e-08 62.8 58 55.2
CBR_g4065 Chara braunii HOM05D001516 ORTHO05D001357 8.2e-08 62.0 49 49.0
MCO05G140 Micromonas commoda HOM05D001516 ORTHO05D001357 8.2e-08 62.0 48 54.2
AagrBONN_evm.TU.Sc2ySwM_228.5656 Anthoceros agrestis HOM05D001765 ORTHO05D005876 1.1e-07 61.6 49 57.1
Mapoly0049s0118 Marchantia polymorpha HOM05D004557 ORTHO05D005258 1.1e-07 61.6 49 57.1
Pp3c20_5720 Physcomitrium patens HOM05D032039 ORTHO05D005258 1.1e-07 61.6 49 57.1
Pp3c24_6460 Physcomitrium patens HOM05D004557 ORTHO05D005258 1.1e-07 61.6 49 57.1
CBR_g4496 Chara braunii HOM05D004557 ORTHO05D005258 1.8e-07 60.8 39 61.5
Zm00001eb231720 Zea mays HOM05D000455 ORTHO05D000434 2.4e-07 60.5 59 45.8
THA.LOC104803900 Tarenaya hassleriana HOM05D000455 ORTHO05D000434 3.1e-07 60.1 53 49.1
Os02g0136000 Oryza sativa ssp. japonica HOM05D000455 ORTHO05D000434 5.3e-07 59.3 59 44.1
SalBow7G0713 Salvia bowleyana HOM05D000455 ORTHO05D000434 5.3e-07 59.3 67 43.3
SMO137G0279 Selaginella moellendorffii HOM05D004557 ORTHO05D005258 5.3e-07 59.3 39 59.0
SMO228G0087 Selaginella moellendorffii HOM05D004557 ORTHO05D005258 5.3e-07 59.3 39 59.0
PRCOL_00007250 Prasinoderma coloniale HOM05D001516 ORTHO05D001357 1.2e-06 58.2 89 37.1
SGA_v2.0_scaffold54G19669 Striga asiatica HOM05D000455 ORTHO05D000434 1.2e-06 58.2 67 41.8
A08p29310 Brassica napus HOM05D000455 ORTHO05D000434 1.6e-06 57.8 54 46.3
HanXRQChr14g0427451 Helianthus annuus HOM05D000455 ORTHO05D000434 1.6e-06 57.8 62 45.2
SEGI_36367 Sequoiadendron giganteum HOM05D004557 ORTHO05D005258 1.6e-06 57.8 81 43.2
MSTRG.24496 Avicennia marina HOM05D000455 ORTHO05D000434 2.0e-06 57.4 67 40.3
Eucgr.A01998 Eucalyptus grandis HOM05D007704 ORTHO05D009758 2.0e-06 57.4 54 50.0
Zm00001eb002490 Zea mays HOM05D000455 ORTHO05D000434 2.0e-06 57.4 54 46.3
CDE05G1912 Ceratophyllum demersum HOM05D004557 ORTHO05D005258 2.7e-06 57.0 41 58.5
Ca_15429_v3 Cicer arietinum L. HOM05D000455 ORTHO05D000434 2.7e-06 57.0 58 39.7
HanXRQChr05g0133711 Helianthus annuus HOM05D000455 ORTHO05D000434 2.7e-06 57.0 54 44.4
HanXRQChr05g0133731 Helianthus annuus HOM05D000455 ORTHO05D000434 2.7e-06 57.0 54 44.4
QL02p000341 Quercus lobata HOM05D004557 ORTHO05D005258 2.7e-06 57.0 93 34.4
C08p20270 Brassica napus HOM05D000455 ORTHO05D000434 3.5e-06 56.6 67 38.8
BolC8t49656H Brassica oleracea HOM05D000455 ORTHO05D000434 3.5e-06 56.6 67 38.8
Duzib014G0001 Durio zibethinus HOM05D007704 ORTHO05D009758 3.5e-06 56.6 90 41.1
Thhalv10013525m.g Eutrema salsugineum HOM05D004557 ORTHO05D005258 3.5e-06 56.6 84 38.1
FvH4_5g25270 Fragaria vesca HOM05D000455 ORTHO05D000434 3.5e-06 56.6 67 41.8
FAN08G0764 Fragaria x ananassa HOM05D000455 ORTHO05D000434 3.5e-06 56.6 67 41.8
FAN13G1418 Fragaria x ananassa HOM05D000455 ORTHO05D000434 3.5e-06 56.6 67 41.8
FAN18G0669 Fragaria x ananassa HOM05D000455 ORTHO05D000434 3.5e-06 56.6 67 41.8
PRCOL_00007102 Prasinoderma coloniale HOM05D007704 ORTHO05D009758 3.5e-06 56.6 47 48.9
RcHm_v2.0_Chr7g0215411 Rosa chinensis HOM05D000455 ORTHO05D000434 3.5e-06 56.6 67 41.8
SalBow5G2684 Salvia bowleyana HOM05D004557 ORTHO05D005258 3.5e-06 56.6 69 40.6
SEGI_37362 Sequoiadendron giganteum HOM05D004557 ORTHO05D005258 3.5e-06 56.6 48 54.2
MSTRG.22096 Avicennia marina HOM05D000455 ORTHO05D000434 4.5e-06 56.2 67 40.3
BcaB03g12860 Brassica carinata HOM05D000455 ORTHO05D000434 4.5e-06 56.2 67 38.8
Migut.B01423 Erythranthe guttata HOM05D004557 ORTHO05D005258 4.5e-06 56.2 55 50.9
Gorai.005G013500 Gossypium raimondii HOM05D000455 ORTHO05D000434 4.5e-06 56.2 56 42.9
BcaB02g08935 Brassica carinata HOM05D000455 ORTHO05D000434 5.9e-06 55.8 53 49.1
A08p30190 Brassica napus HOM05D002208 ORTHO05D002333 5.9e-06 55.8 50 44.0
Carub.0007s0023 Capsella rubella HOM05D000455 ORTHO05D000434 5.9e-06 55.8 41 53.7
ECA233G4315 Erigeron canadensis HOM05D000455 ORTHO05D000434 5.9e-06 55.8 54 44.4
Gohir.A02G010600 Gossypium hirsutum HOM05D000455 ORTHO05D000434 5.9e-06 55.8 56 42.9
HanXRQChr07g0189401 Helianthus annuus HOM05D000455 ORTHO05D000434 5.9e-06 55.8 54 44.4
Lsat_1_v5_gn_6_8860 Lactuca sativa HOM05D000455 ORTHO05D000434 5.9e-06 55.8 54 44.4
Lj1g0018954 Lotus japonicus HOM05D001516 ORTHO05D001357 5.9e-06 55.8 59 39.0
Oeu035844.1 Olea europaea HOM05D000455 ORTHO05D000434 5.9e-06 55.8 54 46.3
Oeu037990.1 Olea europaea HOM05D004557 ORTHO05D005258 5.9e-06 55.8 89 39.3
PSO832G0026 Papaver somniferum HOM05D001516 ORTHO05D001357 5.9e-06 55.8 76 36.8
HPP92_024782 Vanilla planifolia HOM05D004557 ORTHO05D005258 5.9e-06 55.8 69 37.7
Aa31LG4G6430 Aethionema arabicum HOM05D000455 ORTHO05D000434 7.7e-06 55.5 69 39.1
AL7G15560 Arabidopsis lyrata HOM05D001516 ORTHO05D001357 7.7e-06 55.5 85 38.8
BcaC07g39046 Brassica carinata HOM05D000455 ORTHO05D000434 7.7e-06 55.5 67 38.8
Haze_18125 Corylus avellana HOM05D004557 ORTHO05D005258 7.7e-06 55.5 98 33.7
Dinv29489 Davidia involucrata HOM05D004557 ORTHO05D005258 7.7e-06 55.5 87 35.6
ECA233G2250 Erigeron canadensis HOM05D000455 ORTHO05D000434 7.7e-06 55.5 41 53.7
HanXRQChr08g0216451 Helianthus annuus HOM05D000455 ORTHO05D000434 7.7e-06 55.5 41 53.7
HanXRQChr09g0248091 Helianthus annuus HOM05D004557 ORTHO05D005258 7.7e-06 55.5 47 51.1
Lsat_1_v5_gn_8_26560 Lactuca sativa HOM05D000455 ORTHO05D000434 7.7e-06 55.5 41 53.7
Nn5g28590 Nelumbo nucifera HOM05D004557 ORTHO05D005258 7.7e-06 55.5 72 40.3
Os03g0131100 Oryza sativa ssp. japonica HOM05D000455 ORTHO05D000434 7.7e-06 55.5 54 44.4
RcHm_v2.0_Chr3g0460751 Rosa chinensis HOM05D001516 ORTHO05D001357 7.7e-06 55.5 60 41.7
SGA_v2.0_scaffold20G09180 Striga asiatica HOM05D004557 ORTHO05D005258 7.7e-06 55.5 90 33.3


User provided reference genes

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