Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1490.7 845 100.0
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1328.2 845 87.7
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1312.7 846 84.5
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1246.9 844 80.7
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1192.2 844 79.0
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1179.9 833 77.3
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1170.2 848 77.4
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1166.0 788 78.9
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1161.0 819 79.7
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1157.1 837 75.6
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1156.0 844 77.4
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1152.9 819 78.0
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1152.5 827 74.8
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1151.3 822 78.5
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1149.4 850 74.6
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1149.0 820 77.0
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1147.9 820 74.6
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1146.3 828 75.0
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1144.8 843 76.7
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1144.4 824 78.8
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1142.1 831 77.0
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1141.7 822 78.0
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1140.2 822 74.9
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1138.6 822 74.8
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1137.9 822 74.8
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1135.6 830 73.3
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1135.2 845 74.1
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1134.8 844 72.2
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1134.0 843 76.5
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1133.2 845 76.9
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1132.5 822 74.6
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1132.1 822 74.5
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1130.9 855 73.0
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1129.8 822 74.2
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1125.5 820 77.4
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1122.5 819 77.8
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1116.7 821 73.6
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1111.7 851 72.7
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1110.9 827 75.8
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1109.7 851 74.3
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1109.0 791 75.3
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1109.0 833 73.0
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 0.0e+00 1107.4 864 76.3
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1105.1 842 75.3
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1102.8 844 70.3
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1101.3 844 76.7
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1100.1 851 69.6
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1092.4 817 73.2
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1091.6 828 72.9
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1090.1 825 72.5
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1089.7 937 67.2
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1087.4 826 74.1
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1085.9 805 73.8
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1082.8 829 72.5
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1081.6 827 72.9
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1081.6 830 72.7
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1080.9 828 72.3
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1079.7 847 68.7
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1078.9 829 72.3
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1075.8 755 75.9
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 5.8e-312 1073.9 756 75.5
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 5.8e-312 1073.9 825 72.6
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 5.8e-312 1073.9 853 69.6
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 5.2e-311 1070.8 829 72.5
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 1.5e-310 1069.3 850 69.1
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.5e-310 1068.5 831 68.4
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 4.4e-310 1067.8 828 72.6
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 9.7e-310 1066.6 853 69.2
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 7.0e-308 1060.4 842 70.4
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 1.6e-307 1059.3 817 68.1
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 1.7e-306 1055.8 829 69.6
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 2.2e-306 1055.4 841 70.6
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 2.9e-306 1055.0 843 68.1
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 5.0e-306 1054.3 841 70.5
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 5.5e-305 1050.8 843 67.9
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 9.4e-305 1050.0 852 67.6
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 6.8e-303 1043.9 824 69.2
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 1.5e-302 1042.7 824 70.4
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 3.4e-302 1041.6 829 69.1
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 2.8e-301 1038.5 826 69.6
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 1.0e-298 1030.0 827 68.4
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 3.8e-298 1028.1 840 71.5
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 3.8e-298 1028.1 831 70.2
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 1.6e-296 1022.7 823 67.0
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 3.6e-296 1021.5 732 73.8
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 6.1e-296 1020.8 882 64.9
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 1.0e-295 1020.0 827 68.0
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 1.8e-295 1019.2 665 77.4
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 1.5e-294 1016.1 824 66.9
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 2.0e-294 1015.8 817 67.8
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 2.6e-294 1015.4 833 67.2
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 7.5e-294 1013.8 666 77.5
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 3.7e-293 1011.5 830 68.8
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 5.0e-290 1001.1 819 66.3
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 4.7e-280 968.0 899 60.7
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 6.2e-280 967.6 826 64.8
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 1.4e-279 966.5 648 75.9
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 8.9e-279 963.8 648 75.8
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 5.8e-278 961.1 624 78.2
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 1.3e-277 959.9 922 63.6
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 4.6e-275 951.4 818 64.7
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 2.5e-273 945.7 818 61.2
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 2.6e-270 935.6 633 75.7
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 1.2e-264 916.8 848 59.0
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 1.9e-260 902.9 770 66.1
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 7.1e-260 901.0 812 64.8
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 9.2e-260 900.6 568 78.5
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 2.1e-251 872.8 835 55.6
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 9.6e-233 810.8 843 52.4
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 2.4e-231 806.2 839 52.6
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 8.7e-226 787.7 789 52.5
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 3.4e-214 749.2 840 55.6
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 7.7e-214 748.0 765 51.2
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 8.5e-213 744.6 814 56.6
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 5.3e-199 698.7 424 83.5
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 1.0e-165 588.2 477 67.7
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.2e-150 538.1 439 67.4
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 9.9e-145 518.5 322 83.5
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 1.4e-122 444.9 301 72.1
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 1.9e-116 424.5 789 36.1
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.5e-116 424.1 259 81.1
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 4.3e-116 423.3 777 34.9
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 4.1e-106 390.2 383 66.6
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.0e-101 374.0 388 55.7
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 4.1e-82 310.5 859 29.7
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 4.5e-65 253.8 279 55.9
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 6.1e-62 243.4 390 48.2
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 1.6e-54 218.8 206 63.1
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 3.1e-53 214.5 131 79.4
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 1.3e-48 199.1 151 70.2
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 1.1e-42 179.5 125 72.0
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.9e-42 178.7 142 71.1
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 4.1e-34 151.0 147 55.8
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 5.4e-34 150.6 158 56.3
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.2e-33 149.4 147 55.8
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 2.1e-33 148.7 121 66.1
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 7.6e-20 103.6 70 75.7
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 5.5e-10 70.9 77 53.2


User provided reference genes

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