Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G058000 Populus trichocarpa HOM05D006899 ORTHO05D008566 1.3e-94 349.7 187 100.0
Sabra02G0047300 Salix brachista HOM05D006899 ORTHO05D008566 7.9e-79 297.4 187 88.8
Potri.005G204200 Populus trichocarpa HOM05D006899 ORTHO05D008566 6.5e-73 277.7 183 82.5
Gorai.001G092300 Gossypium raimondii HOM05D006899 ORTHO05D008566 1.7e-60 236.5 191 69.6
QL08p044873 Quercus lobata HOM05D006899 ORTHO05D008566 2.2e-60 236.1 188 73.4
Gohir.D07G086300 Gossypium hirsutum HOM05D006899 ORTHO05D008566 3.1e-59 232.3 192 69.8
Gohir.A07G080700 Gossypium hirsutum HOM05D006899 ORTHO05D008566 7.0e-59 231.1 192 69.8
Cfa023072 Carpinus fangiana HOM05D006899 ORTHO05D008566 2.0e-58 229.6 189 72.0
CiPaw.04G138700 Carya illinoinensis HOM05D006899 ORTHO05D008566 6.5e-57 224.6 188 69.1
Thecc.01G170200 Theobroma cacao HOM05D006899 ORTHO05D008566 9.4e-56 220.7 190 68.9
Rhsim04G0081600 Rhododendron simsii HOM05D006899 ORTHO05D008566 1.2e-55 220.3 192 67.2
Glyma.14G029700 Glycine max HOM05D006899 ORTHO05D008566 1.6e-55 219.9 187 67.4
arahy.Tifrunner.gnm1.ann1.SNQ1P9 Arachis hypogaea HOM05D006899 ORTHO05D008566 4.7e-55 218.4 189 68.3
Glyma.02G285100 Glycine max HOM05D006899 ORTHO05D008566 1.4e-54 216.9 187 66.8
Phvul.008G193700 Phaseolus vulgaris HOM05D006899 ORTHO05D008566 1.4e-54 216.9 187 66.3
Haze_13530 Corylus avellana HOM05D006899 ORTHO05D008566 1.8e-54 216.5 227 60.4
VMungo0647G1903 Vigna mungo HOM05D006899 ORTHO05D008566 1.8e-54 216.5 187 66.3
arahy.Tifrunner.gnm1.ann1.226PX6 Arachis hypogaea HOM05D006899 ORTHO05D008566 2.3e-54 216.1 188 67.6
COL.COLO4_08896 Corchorus olitorius HOM05D006899 ORTHO05D008566 5.2e-54 214.9 191 68.1
Manes.10G088300 Manihot esculenta HOM05D006899 ORTHO05D008566 6.8e-54 214.5 197 70.1
PGR042G1005 Punica granatum HOM05D006899 ORTHO05D008566 2.6e-53 212.6 187 66.8
vmacro09192 Vaccinium macrocarpon HOM05D006899 ORTHO05D008566 1.3e-52 210.3 190 63.2
GSVIVG01020847001 Vitis vinifera HOM05D006899 ORTHO05D008566 1.7e-52 209.9 171 74.3
MD09G1149700 Malus domestica HOM05D006899 ORTHO05D008566 2.2e-52 209.5 189 67.7
LjContig00049g0021241 Lotus japonicus HOM05D006899 ORTHO05D008566 3.7e-52 208.8 188 64.9
Duzib138G0065 Durio zibethinus HOM05D006899 ORTHO05D008566 8.3e-52 207.6 182 68.1
Nitab4.5_0001883g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 8.3e-52 207.6 194 65.5
Peaxi162Scf00111g00221 Petunia axillaris HOM05D006899 ORTHO05D008566 8.3e-52 207.6 181 65.7
FvH4_6g38570 Fragaria vesca HOM05D006899 ORTHO05D008566 1.4e-51 206.8 186 66.1
FAN09G4704 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.4e-51 206.8 186 66.1
TWI59G0652 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 1.4e-51 206.8 178 71.3
Nitab4.5_0002251g0050 Nicotiana tabacum HOM05D006899 ORTHO05D008566 1.8e-51 206.5 194 64.4
TAR627G0648 Trochodendron aralioides HOM05D006899 ORTHO05D008566 2.4e-51 206.1 195 61.5
FAN05G4631 Fragaria x ananassa HOM05D006899 ORTHO05D008566 7.0e-51 204.5 186 65.6
Oeu020934.1 Olea europaea HOM05D006899 ORTHO05D008566 1.6e-50 203.4 190 64.2
MD17G1136600 Malus domestica HOM05D006899 ORTHO05D008566 2.0e-50 203.0 190 64.7
Nn4g26539 Nelumbo nucifera HOM05D006899 ORTHO05D008566 2.7e-50 202.6 197 60.9
Medtr5g091190 Medicago truncatula HOM05D006899 ORTHO05D008566 3.5e-50 202.2 181 67.4
Oeu013822.1 Olea europaea HOM05D006899 ORTHO05D008566 3.5e-50 202.2 190 63.7
Ciclev10032884m.g Citrus clementina HOM05D006899 ORTHO05D008566 5.9e-50 201.4 193 64.2
TPR.G12679 Trifolium pratense HOM05D006899 ORTHO05D008566 2.2e-49 199.5 188 64.4
PGSC0003DMG400017304 Solanum tuberosum HOM05D006899 ORTHO05D008566 8.5e-49 197.6 176 65.3
CsaV3_4G031920 Cucumis sativus L. HOM05D006899 ORTHO05D008566 2.5e-48 196.1 192 62.0
Prupe.3G176400 Prunus persica HOM05D006899 ORTHO05D008566 2.5e-48 196.1 193 63.2
MELO3C026968.2 Cucumis melo HOM05D006899 ORTHO05D008566 4.2e-48 195.3 159 69.8
Sopen07g029600 Solanum pennellii HOM05D006899 ORTHO05D008566 4.2e-48 195.3 187 63.6
MSTRG.12841 Avicennia marina HOM05D006899 ORTHO05D008566 5.5e-48 194.9 192 63.5
Cpa.g.sc50.104 Carica papaya HOM05D006899 ORTHO05D008566 7.2e-48 194.5 131 80.9
CANSAT64G2357 Cannabis sativa HOM05D006899 ORTHO05D008566 9.4e-48 194.1 203 61.1
Dinv09142 Davidia involucrata HOM05D006899 ORTHO05D008566 1.2e-47 193.7 167 67.7
RcHm_v2.0_Chr2g0151981 Rosa chinensis HOM05D006899 ORTHO05D008566 1.2e-47 193.7 192 62.5
Cc05_g09700 Coffea canephora HOM05D006899 ORTHO05D008566 4.7e-47 191.8 185 63.8
Solyc07g056240.3 Solanum lycopersicum HOM05D006899 ORTHO05D008566 4.7e-47 191.8 187 62.6
EL10Ac9g22843 Beta vulgaris HOM05D006899 ORTHO05D008566 6.1e-47 191.4 203 59.6
Atru.chr6.2058 Acer truncatum HOM05D006899 ORTHO05D008566 1.8e-46 189.9 190 62.6
Sed0025977 Sechium edule HOM05D006899 ORTHO05D008566 1.8e-46 189.9 191 63.4
Eucgr.A02015 Eucalyptus grandis HOM05D006899 ORTHO05D008566 2.3e-46 189.5 204 61.8
FAN02G3475 Fragaria x ananassa HOM05D006899 ORTHO05D008566 3.0e-46 189.1 221 55.7
SalBow7G1887 Salvia bowleyana HOM05D006899 ORTHO05D008566 8.8e-46 187.6 195 62.6
Aa31LG1G24750 Aethionema arabicum HOM05D006899 ORTHO05D008566 2.0e-45 186.4 189 60.8
SGA_v2.0_scaffold4G02123 Striga asiatica HOM05D006899 ORTHO05D008566 2.0e-45 186.4 154 68.8
BcaC02g07213 Brassica carinata HOM05D006899 ORTHO05D008566 4.4e-45 185.3 192 59.4
C04p70000 Brassica napus HOM05D006899 ORTHO05D008566 4.4e-45 185.3 192 59.4
BolC4t28500H Brassica oleracea HOM05D006899 ORTHO05D008566 4.4e-45 185.3 192 59.4
AUR62017595 Chenopodium quinoa HOM05D006899 ORTHO05D008566 5.7e-45 184.9 195 59.0
AUR62015134 Chenopodium quinoa HOM05D006899 ORTHO05D008566 1.3e-44 183.7 195 59.5
Hund24233 Selenicereus undatus HOM05D006899 ORTHO05D008566 4.9e-44 181.8 191 63.9
Actinidia03641 Actinidia chinensis HOM05D006899 ORTHO05D008566 8.3e-44 181.0 126 79.4
Sp4g25100 Schrenkiella parvula HOM05D006899 ORTHO05D008566 1.1e-43 180.6 194 62.4
ClCG11G016470 Citrullus lanatus HOM05D006899 ORTHO05D008566 3.1e-43 179.1 159 65.4
BraA04t18701Z Brassica rapa HOM05D006899 ORTHO05D008566 1.6e-42 176.8 198 57.6
THA.LOC104803370 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 2.0e-42 176.4 145 71.7
THA.LOC104802283 Tarenaya hassleriana HOM05D006899 ORTHO05D008566 3.5e-42 175.6 192 59.4
CARHR138030 Cardamine hirsuta HOM05D006899 ORTHO05D008566 4.5e-42 175.3 196 57.1
CSS0032532 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 5.9e-42 174.9 197 59.4
AT2G42975 Arabidopsis thaliana HOM05D006899 ORTHO05D008566 7.7e-42 174.5 200 59.0
FAN14G2046 Fragaria x ananassa HOM05D006899 ORTHO05D008566 1.5e-40 170.2 123 75.6
Migut.E01772 Erythranthe guttata HOM05D006899 ORTHO05D008566 1.9e-40 169.9 191 58.6
Carub.0004s2544 Capsella rubella HOM05D006899 ORTHO05D008566 2.5e-40 169.5 201 55.2
Sc13g0007020 Simmondsia chinensis HOM05D006899 ORTHO05D008566 2.5e-40 169.5 154 62.3
AL4G41610 Arabidopsis lyrata HOM05D006899 ORTHO05D008566 4.3e-40 168.7 196 56.1
BNapus_Darmor_BZH_scaffold_64p00160 Brassica napus HOM05D006899 ORTHO05D008566 9.5e-40 167.5 191 56.5
Duzib133G1045 Durio zibethinus HOM05D006899 ORTHO05D008566 2.8e-39 166.0 188 56.9
Thhalv10017256m.g Eutrema salsugineum HOM05D006899 ORTHO05D008566 1.4e-38 163.7 208 54.3
BcaB06g29274 Brassica carinata HOM05D006899 ORTHO05D008566 5.2e-38 161.8 197 55.3
Aqoxy1G02918 Aquilegia oxysepala HOM05D006899 ORTHO05D008566 1.2e-37 160.6 147 63.3
MBI10_g21113_MAGBIO Magnolia biondii HOM05D006899 ORTHO05D008566 1.2e-37 160.6 196 55.1
Lalb_Chr04g0248871 Lupinus albus HOM05D006899 ORTHO05D008566 4.4e-37 158.7 99 85.9
Ah.01g013620 Amaranthus hybridus HOM05D006899 ORTHO05D008566 6.4e-36 154.8 100 80.0
CSS0025344 Camellia sinensis var. sinensis HOM05D006899 ORTHO05D008566 4.1e-35 152.1 195 54.9
HanXRQChr17g0554721 Helianthus annuus HOM05D006899 ORTHO05D008566 4.6e-34 148.7 167 55.7
PSO478G1301 Papaver somniferum HOM05D006899 ORTHO05D008566 2.3e-33 146.4 154 60.4
ECA233G0523 Erigeron canadensis HOM05D006899 ORTHO05D008566 3.0e-33 146.0 166 55.4
PSO675G8667 Papaver somniferum HOM05D006899 ORTHO05D008566 3.0e-33 146.0 154 60.4
Lj1P601T16 Lonicera japonica HOM05D006899 ORTHO05D008566 1.5e-32 143.7 88 84.1
Lsat_1_v5_gn_8_137860 Lactuca sativa HOM05D006899 ORTHO05D008566 5.6e-32 141.7 162 54.9
PSO541G6147 Papaver somniferum HOM05D006899 ORTHO05D008566 6.8e-30 134.8 124 64.5
Os01g0666600 Oryza sativa ssp. japonica HOM05D006899 ORTHO05D008566 1.2e-29 134.0 152 54.6
TWI23G0441 Tripterygium wilfordii HOM05D006899 ORTHO05D008566 1.3e-28 130.6 111 70.3
unitig_60.g25592 Utricularia gibba HOM05D006899 ORTHO05D008566 1.7e-28 130.2 156 52.6
CDE05G0801 Ceratophyllum demersum HOM05D006899 ORTHO05D008566 2.2e-28 129.8 165 52.1
Zm00001eb157430 Zea mays HOM05D006899 ORTHO05D008566 1.1e-27 127.5 160 50.0
ATR0585G139 Amborella trichopoda HOM05D006899 ORTHO05D008566 2.7e-26 122.9 108 63.9
Hund24244 Selenicereus undatus HOM05D006899 ORTHO05D008566 1.7e-25 120.2 98 70.4
HPP92_010055 Vanilla planifolia HOM05D006899 ORTHO05D008566 8.6e-25 117.9 120 56.7
Nitab4.5_0004243g0030 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.1e-23 113.2 84 72.6
Nitab4.5_0004950g0010 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.6e-21 106.3 82 72.0
Nitab4.5_0009604g0020 Nicotiana tabacum HOM05D006899 ORTHO05D008566 2.6e-21 106.3 82 72.0
Pp3c13_6560 Physcomitrium patens HOM05D006899 ORTHO05D008566 1.0e-17 94.4 149 40.9
Mapoly0120s0054 Marchantia polymorpha HOM05D006899 ORTHO05D008566 9.5e-16 87.8 148 39.2
Medtr5g016040 Medicago truncatula HOM05D006899 ORTHO05D008566 2.1e-15 86.7 81 60.5
AagrBONN_evm.TU.Sc2ySwM_368.298 Anthoceros agrestis HOM05D006899 ORTHO05D008566 4.7e-15 85.5 122 41.0
Nitab4.5_0002251g0080 Nicotiana tabacum HOM05D006899 ORTHO05D008566 4.7e-15 85.5 97 52.6
Duzib130G0001 Durio zibethinus HOM05D006899 ORTHO05D008566 3.7e-12 75.9 89 57.3
SMO353G0201 Selaginella moellendorffii HOM05D006899 ORTHO05D008566 1.9e-11 73.6 91 47.3
Medtr7g035145 Medicago truncatula HOM05D006899 ORTHO05D008566 3.6e-07 59.3 70 41.4
Psat2g016880 Pisum sativum HOM05D006899 ORTHO05D008566 1.8e-06 57.0 86 51.2


User provided reference genes

Program Settings