Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G047875 Populus trichocarpa HOM05D004978 ORTHO05D005621 4.0e-90 334.7 168 100.0
Potri.005G215200 Populus trichocarpa HOM05D004978 ORTHO05D005621 9.4e-47 190.7 163 65.6
Manes.05G081900 Manihot esculenta HOM05D004978 ORTHO05D005621 1.2e-33 147.1 165 53.3
Atru.chr5.1521 Acer truncatum HOM05D004978 ORTHO05D005621 2.4e-26 122.9 165 46.1
Ciclev10019332m.g Citrus clementina HOM05D004978 ORTHO05D005621 9.1e-26 120.9 165 44.8
QL12p042266 Quercus lobata HOM05D004978 ORTHO05D005621 2.2e-24 116.3 177 42.9
RcHm_v2.0_Chr6g0289911 Rosa chinensis HOM05D004978 ORTHO05D005621 4.2e-23 112.1 173 42.2
Dinv32884 Davidia involucrata HOM05D004978 ORTHO05D005621 9.4e-23 110.9 163 46.0
Haze_04642 Corylus avellana HOM05D004978 ORTHO05D005621 4.7e-22 108.6 189 41.3
CANSAT25G0263 Cannabis sativa HOM05D004978 ORTHO05D005621 1.8e-21 106.7 165 41.2
Cfa006202 Carpinus fangiana HOM05D004978 ORTHO05D005621 2.3e-21 106.3 157 45.9
QL01p000805 Quercus lobata HOM05D004978 ORTHO05D005621 5.2e-21 105.1 170 40.0
GSVIVG01003120001 Vitis vinifera HOM05D004978 ORTHO05D005621 8.8e-21 104.4 123 45.5
FvH4_2g22940 Fragaria vesca HOM05D004978 ORTHO05D005621 1.2e-20 104.0 167 41.3
Gohir.D08G072400 Gossypium hirsutum HOM05D004978 ORTHO05D005621 3.4e-20 102.4 161 42.9
Gorai.004G076600 Gossypium raimondii HOM05D004978 ORTHO05D005621 3.4e-20 102.4 161 42.9
TWI75G1276 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 5.7e-20 101.7 165 41.8
MD11G1278700 Malus domestica HOM05D004978 ORTHO05D005621 1.3e-19 100.5 162 39.5
FAN27G2645 Fragaria x ananassa HOM05D004978 ORTHO05D005621 1.7e-19 100.1 176 38.1
CSS0039116 Camellia sinensis var. sinensis HOM05D004978 ORTHO05D005621 4.9e-19 98.6 170 40.6
FAN15G0608 Fragaria x ananassa HOM05D004978 ORTHO05D005621 4.9e-19 98.6 176 38.1
FAN20G1006 Fragaria x ananassa HOM05D004978 ORTHO05D005621 4.9e-19 98.6 177 38.4
Thecc.01G271500 Theobroma cacao HOM05D004978 ORTHO05D005621 1.4e-18 97.1 165 41.2
Gohir.A08G063900 Gossypium hirsutum HOM05D004978 ORTHO05D005621 1.8e-18 96.7 161 41.0
QL05p031917 Quercus lobata HOM05D000015 ORTHO05D005621 3.1e-18 95.9 124 46.0
TWI12G0244 Tripterygium wilfordii HOM05D004978 ORTHO05D005621 3.1e-18 95.9 165 40.6
Aqoxy5G00398 Aquilegia oxysepala HOM05D004978 ORTHO05D005621 9.2e-18 94.4 159 42.1
FAN24G2655 Fragaria x ananassa HOM05D004978 ORTHO05D005621 9.2e-18 94.4 169 39.1
Actinidia24924 Actinidia chinensis HOM05D004978 ORTHO05D005621 1.2e-17 94.0 166 41.0
CiPaw.07G086800 Carya illinoinensis HOM05D004978 ORTHO05D005621 1.6e-17 93.6 166 41.6
arahy.Tifrunner.gnm1.ann1.ZM38TH Arachis hypogaea HOM05D004978 ORTHO05D005621 4.5e-17 92.0 162 40.7
COL.COLO4_09187 Corchorus olitorius HOM05D004978 ORTHO05D005621 1.3e-16 90.5 172 37.8
Cpa.g.sc52.118 Carica papaya HOM05D004978 ORTHO05D005621 2.9e-16 89.4 107 45.8
Glyma.10G029800 Glycine max HOM05D004978 ORTHO05D005621 8.6e-16 87.8 162 39.5
Lalb_Chr02g0142521 Lupinus albus HOM05D004978 ORTHO05D005621 1.1e-15 87.4 162 40.1
Phvul.007G175000 Phaseolus vulgaris HOM05D004978 ORTHO05D005621 5.6e-15 85.1 162 38.9
PGR044G1133 Punica granatum HOM05D004978 ORTHO05D005621 7.3e-15 84.7 165 41.2
vmacro14887 Vaccinium macrocarpon HOM05D004978 ORTHO05D005621 1.6e-14 83.6 168 39.9
Nn1g02459 Nelumbo nucifera HOM05D004978 ORTHO05D005621 3.6e-14 82.4 164 39.0
Lj2A1164T58 Lonicera japonica HOM05D004978 ORTHO05D005621 8.0e-14 81.3 116 39.7
PSO210G1189 Papaver somniferum HOM05D004978 ORTHO05D005621 1.4e-13 80.5 164 36.0
PSO832G2480 Papaver somniferum HOM05D004978 ORTHO05D005621 1.4e-13 80.5 164 35.4
Medtr1g071300 Medicago truncatula HOM05D004978 ORTHO05D005621 2.3e-13 79.7 167 40.1
DCAR_002701 Daucus carota HOM05D004978 ORTHO05D005621 3.0e-13 79.3 165 37.0
Rhsim01G0272000 Rhododendron simsii HOM05D004978 ORTHO05D005621 5.2e-13 78.6 181 37.6
BcaB01g04828 Brassica carinata HOM05D004978 ORTHO05D005621 1.2e-12 77.4 167 35.3
C03p11220 Brassica napus HOM05D004978 ORTHO05D005621 1.2e-12 77.4 167 35.3
BolC3t13593H Brassica oleracea HOM05D004978 ORTHO05D005621 1.2e-12 77.4 167 35.3
Aa31LG9G14570 Aethionema arabicum HOM05D004978 ORTHO05D005621 1.5e-12 77.0 157 34.4
Ca_09727_v3 Cicer arietinum L. HOM05D004978 ORTHO05D005621 2.6e-12 76.3 164 37.2
Lj5g0010127 Lotus japonicus HOM05D004978 ORTHO05D005621 4.4e-12 75.5 162 40.7
MBI11_g08089_MAGBIO Magnolia biondii HOM05D004978 ORTHO05D005621 5.7e-12 75.1 124 43.5
Cc01_g19000 Coffea canephora HOM05D004978 ORTHO05D005621 9.8e-12 74.3 157 37.6
Sed0003895 Sechium edule HOM05D004978 ORTHO05D005621 1.3e-11 73.9 166 35.5
arahy.Tifrunner.gnm1.ann1.54WUVN Arachis hypogaea HOM05D004978 ORTHO05D005621 1.7e-11 73.6 190 32.1
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 1.7e-11 73.6 160 34.4
CARHR193040 Cardamine hirsuta HOM05D004978 ORTHO05D005621 1.7e-11 73.6 164 35.4
Migut.D00356 Erythranthe guttata HOM05D004978 ORTHO05D005621 1.7e-11 73.6 163 32.5
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 2.9e-11 72.8 167 33.5
Lsat_1_v5_gn_8_93980 Lactuca sativa HOM05D004978 ORTHO05D005621 2.9e-11 72.8 160 35.6
AL6G31360 Arabidopsis lyrata HOM05D004978 ORTHO05D005621 3.7e-11 72.4 168 38.1
Psat6g058480 Pisum sativum HOM05D004978 ORTHO05D005621 3.7e-11 72.4 164 34.1
Oeu014736.1 Olea europaea HOM05D004978 ORTHO05D005621 8.3e-11 71.2 214 31.3
Sed0016751 Sechium edule HOM05D004978 ORTHO05D005621 8.3e-11 71.2 159 35.2
VMungo0720G1640 Vigna mungo HOM05D004978 ORTHO05D005621 8.3e-11 71.2 137 36.5
AT5G19840 Arabidopsis thaliana HOM05D004978 ORTHO05D005621 1.1e-10 70.9 168 36.9
CsaV3_7G027890 Cucumis sativus L. HOM05D004978 ORTHO05D005621 3.2e-10 69.3 169 34.3
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 4.1e-10 68.9 158 37.3
Sc05g0001300 Simmondsia chinensis HOM05D004978 ORTHO05D005621 5.4e-10 68.6 90 44.4
ClCG09G007410 Citrullus lanatus HOM05D004978 ORTHO05D005621 1.2e-09 67.4 166 33.7
MELO3C015807.2 Cucumis melo HOM05D004978 ORTHO05D005621 1.2e-09 67.4 166 33.7
HanXRQChr04g0113941 Helianthus annuus HOM05D004978 ORTHO05D005621 1.2e-09 67.4 157 36.3
MD03G1258100 Malus domestica HOM05D004978 ORTHO05D005621 3.5e-09 65.9 84 46.4
Thhalv10013262m.g Eutrema salsugineum HOM05D004978 ORTHO05D005621 1.3e-08 63.9 164 32.9
Sp6g24570 Schrenkiella parvula HOM05D004978 ORTHO05D005621 1.3e-08 63.9 161 35.4
Zm00001eb370120 Zea mays HOM05D004978 ORTHO05D005621 2.3e-08 63.2 157 33.1
SGA_v2.0_scaffold1G00534 Striga asiatica HOM05D004978 ORTHO05D005621 5.0e-08 62.0 94 38.3
ECA236G1829 Erigeron canadensis HOM05D004978 ORTHO05D005621 3.3e-07 59.3 157 35.0
HPP92_022057 Vanilla planifolia HOM05D004978 ORTHO05D005621 3.3e-07 59.3 156 29.5
Nitab4.5_0004115g0020 Nicotiana tabacum HOM05D004978 ORTHO05D005621 5.6e-07 58.5 183 31.1
AUR62032283 Chenopodium quinoa HOM05D004978 ORTHO05D005621 1.2e-06 57.4 200 30.5
Dinv22502 Davidia involucrata HOM05D004978 ORTHO05D005621 6.2e-06 55.1 90 48.9
TPR.G21665 Trifolium pratense HOM05D004978 ORTHO05D005621 6.2e-06 55.1 93 38.7
unitig_0.g1132 Utricularia gibba HOM05D004978 ORTHO05D005621 8.0e-06 54.7 115 31.3


User provided reference genes

Program Settings