Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.9e-173 612.5 319 100.0
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 3.4e-154 548.5 320 90.6
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 1.1e-149 533.5 319 89.0
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 1.5e-133 479.9 308 80.8
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 4.3e-133 478.4 305 81.6
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 4.3e-133 478.4 305 81.6
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 1.8e-131 473.0 305 81.0
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 4.4e-130 468.4 301 79.7
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 5.8e-130 468.0 300 80.0
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 1.7e-129 466.5 320 78.4
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 2.4e-128 462.6 299 80.6
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 5.4e-128 461.5 312 78.5
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 9.2e-128 460.7 304 79.3
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 9.2e-128 460.7 317 75.1
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 2.7e-127 459.1 315 78.1
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 2.7e-127 459.1 315 78.1
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 1.0e-126 457.2 310 77.7
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 1.7e-126 456.4 319 75.5
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 3.0e-126 455.7 301 77.1
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 8.6e-126 454.1 323 76.5
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 3.3e-125 452.2 323 75.2
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 3.6e-124 448.7 304 76.0
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 4.7e-124 448.4 304 76.3
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.8e-123 446.4 320 74.1
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 3.1e-123 445.7 301 75.7
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 6.8e-123 444.5 320 73.1
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 6.8e-123 444.5 301 77.4
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.5e-122 443.4 316 75.3
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 1.5e-122 443.4 303 76.6
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 2.6e-122 442.6 301 77.1
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 9.9e-122 440.7 316 74.7
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 9.9e-122 440.7 306 75.2
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.3e-121 440.3 320 72.2
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 1.3e-121 440.3 301 76.4
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 4.9e-121 438.3 303 75.6
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.4e-120 436.8 315 74.6
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.4e-120 434.9 302 74.8
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 2.7e-119 432.6 305 74.8
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 6.0e-119 431.4 298 74.8
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.7e-118 429.9 302 74.5
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 3.9e-118 428.7 313 72.2
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 3.9e-118 428.7 320 70.3
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 5.1e-118 428.3 302 73.5
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 1.5e-117 426.8 311 73.3
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 1.9e-117 426.4 291 77.7
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 4.3e-117 425.2 305 72.5
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 4.3e-117 425.2 319 72.4
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 4.3e-117 425.2 299 73.9
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 4.3e-117 425.2 299 73.9
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 5.6e-117 424.9 291 76.3
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 7.3e-117 424.5 301 73.8
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 7.3e-117 424.5 299 73.9
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 8.1e-116 421.0 302 74.5
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 8.1e-116 421.0 311 73.3
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.4e-115 420.2 302 73.8
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 1.8e-115 419.9 306 71.6
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 2.4e-115 419.5 301 73.4
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 3.1e-115 419.1 313 69.6
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 4.0e-115 418.7 312 71.5
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 6.9e-115 417.9 311 70.7
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 1.5e-114 416.8 313 70.6
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.2e-113 412.9 307 72.0
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 2.9e-113 412.5 307 70.4
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 6.4e-113 411.4 307 71.3
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 6.4e-113 411.4 315 70.2
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 8.4e-113 411.0 301 72.4
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 8.4e-113 411.0 315 71.1
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 2.4e-112 409.5 299 72.9
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 4.2e-112 408.7 315 70.5
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 5.4e-112 408.3 313 69.6
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 9.3e-112 407.5 303 70.0
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 9.3e-112 407.5 311 70.7
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 1.6e-111 406.8 303 70.0
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 2.7e-111 406.0 312 68.9
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 7.9e-111 404.4 310 69.0
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.0e-110 404.1 309 69.3
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 1.0e-110 404.1 313 69.6
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 1.0e-110 404.1 314 69.4
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 1.0e-110 404.1 313 69.6
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 1.0e-110 404.1 307 69.7
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.0e-110 404.1 322 69.6
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 1.0e-110 404.1 321 69.8
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 3.0e-110 402.5 322 69.6
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 8.7e-110 401.0 315 68.9
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 1.9e-109 399.8 301 70.4
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 1.9e-109 399.8 294 71.1
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 3.3e-109 399.1 304 69.7
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.3e-109 399.1 329 68.1
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 4.3e-109 398.7 299 69.9
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 7.3e-109 397.9 301 70.4
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 9.6e-109 397.5 305 68.2
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 9.6e-109 397.5 296 70.9
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 9.6e-109 397.5 302 71.5
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 2.1e-108 396.4 312 70.2
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 3.6e-108 395.6 329 68.1
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 4.0e-107 392.1 301 69.4
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 5.3e-107 391.7 315 67.6
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.5e-106 390.2 304 69.7
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 2.6e-106 389.4 310 68.4
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 2.2e-105 386.3 298 69.5
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 1.4e-104 383.6 307 67.1
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 1.9e-104 383.3 308 68.5
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 1.9e-104 383.3 306 68.0
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 2.7e-103 379.4 301 68.4
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 2.7e-103 379.4 302 69.9
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 6.0e-103 378.3 316 64.2
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 1.0e-102 377.5 294 70.1
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 2.3e-102 376.3 242 80.2
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 3.0e-102 375.9 305 64.9
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 2.5e-101 372.9 307 65.8
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 5.6e-101 371.7 316 63.6
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 9.6e-101 370.9 307 65.1
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 3.7e-100 369.0 314 64.6
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 3.1e-99 365.9 316 63.9
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.2e-95 354.0 243 75.7
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 1.7e-89 333.6 306 61.8
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 5.0e-89 332.0 299 61.2
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.7e-87 326.2 296 61.1
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 1.6e-79 300.4 213 74.6
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 9.7e-69 264.6 299 52.5
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.7e-68 262.7 299 52.8
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 6.3e-68 261.9 216 66.2
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 8.5e-65 251.5 297 51.2
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 5.2e-62 242.3 239 56.1
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 1.1e-59 234.6 213 61.0
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.1e-59 232.6 197 64.5
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 1.5e-56 224.2 289 45.7
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 4.7e-55 219.2 296 47.6
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 6.3e-52 208.8 322 44.7
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 8.3e-52 208.4 316 41.1
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 5.5e-48 195.7 128 78.1
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 1.2e-47 194.5 285 41.8
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 4.0e-46 189.5 251 47.8
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 5.2e-46 189.1 126 73.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.5e-40 171.0 299 38.5
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 9.2e-35 151.8 129 63.6
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 5.0e-33 146.0 93 79.6
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 4.3e-32 142.9 216 40.3
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 4.0e-30 136.3 301 34.9
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 7.5e-29 132.1 228 39.5
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 2.0e-26 124.0 87 73.6
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 7.8e-26 122.1 127 52.0
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 3.9e-25 119.8 168 46.4
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 3.9e-25 119.8 168 46.4
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 3.9e-25 119.8 168 46.4
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.1e-22 110.2 76 75.0
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 6.8e-22 109.0 72 75.0
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 4.4e-21 106.3 167 41.3
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.1e-19 99.8 176 42.6
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 1.6e-18 97.8 63 81.0
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 3.6e-15 86.7 89 59.6
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 4.7e-15 86.3 78 53.8
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 8.1e-15 85.5 86 57.0
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 4.4e-13 79.7 89 53.9
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 3.0e-09 67.0 112 37.5
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.1e-08 65.1 94 42.6
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 6.2e-07 59.3 49 57.1
AagrBONN_evm.TU.Sc2ySwM_117.2005 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.8e-06 57.8 59 57.6


User provided reference genes

Program Settings