Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G041000 Populus trichocarpa HOM05D004750 ORTHO05D006207 4.0e-84 314.7 155 100.0
Potri.005G222000 Populus trichocarpa HOM05D004750 ORTHO05D006207 4.8e-45 184.9 113 81.4
Ciclev10019537m.g Citrus clementina HOM05D004750 ORTHO05D006207 8.1e-45 184.1 113 82.3
Sabra05G0170600 Salix brachista HOM05D004750 ORTHO05D006207 1.4e-44 183.3 113 80.5
Prupe.8G227200 Prunus persica HOM05D004750 ORTHO05D006207 1.8e-44 183.0 113 80.5
TWI18G0451 Tripterygium wilfordii HOM05D004750 ORTHO05D006207 2.4e-44 182.6 109 83.5
Atru.chr5.1643 Acer truncatum HOM05D004750 ORTHO05D006207 4.0e-44 181.8 112 81.2
Manes.12G030800 Manihot esculenta HOM05D004750 ORTHO05D006207 5.3e-44 181.4 113 79.6
Duzib211G0524 Durio zibethinus HOM05D004750 ORTHO05D006207 1.2e-43 180.3 113 78.8
PGR031G0841 Punica granatum HOM05D004750 ORTHO05D006207 1.5e-43 179.9 113 77.9
CiPaw.03G261600 Carya illinoinensis HOM05D004750 ORTHO05D006207 2.0e-43 179.5 112 78.6
Thecc.01G261600 Theobroma cacao HOM05D004750 ORTHO05D006207 2.0e-43 179.5 113 79.6
QL10p040832 Quercus lobata HOM05D004750 ORTHO05D006207 2.6e-43 179.1 109 80.7
CsaV3_7G027010 Cucumis sativus L. HOM05D004750 ORTHO05D006207 4.4e-43 178.3 113 75.2
Hma1.2p1_0273F.1_g109920 Hydrangea macrophylla HOM05D004750 ORTHO05D006207 4.4e-43 178.3 109 80.7
Duzib133G0290 Durio zibethinus HOM05D004750 ORTHO05D006207 5.8e-43 177.9 113 78.8
Cpa.g.sc50.41 Carica papaya HOM05D004750 ORTHO05D006207 7.6e-43 177.6 113 75.2
Gohir.A08G189200 Gossypium hirsutum HOM05D004750 ORTHO05D006207 7.6e-43 177.6 113 77.9
Lalb_Chr06g0162481 Lupinus albus HOM05D004750 ORTHO05D006207 7.6e-43 177.6 119 73.9
RcHm_v2.0_Chr6g0288821 Rosa chinensis HOM05D004750 ORTHO05D006207 9.9e-43 177.2 113 77.9
CSS0022255 Camellia sinensis var. sinensis HOM05D004750 ORTHO05D006207 1.3e-42 176.8 112 75.0
Gorai.004G220100 Gossypium raimondii HOM05D004750 ORTHO05D006207 1.7e-42 176.4 111 78.4
COL.COLO4_05604 Corchorus olitorius HOM05D004750 ORTHO05D006207 4.9e-42 174.9 113 77.0
ECA248G1706 Erigeron canadensis HOM05D004750 ORTHO05D006207 8.4e-42 174.1 120 70.0
Thhalv10016471m.g Eutrema salsugineum HOM05D004750 ORTHO05D006207 8.4e-42 174.1 132 68.9
Sed0006871 Sechium edule HOM05D004750 ORTHO05D006207 8.4e-42 174.1 114 71.9
Carub.0004s2484 Capsella rubella HOM05D004750 ORTHO05D006207 1.1e-41 173.7 120 72.5
FvH4_2g21920 Fragaria vesca HOM05D004750 ORTHO05D006207 1.1e-41 173.7 111 77.5
FAN20G0807 Fragaria x ananassa HOM05D004750 ORTHO05D006207 1.1e-41 173.7 111 77.5
FAN24G1514 Fragaria x ananassa HOM05D004750 ORTHO05D006207 1.1e-41 173.7 111 77.5
Gohir.D08G207700 Gossypium hirsutum HOM05D004750 ORTHO05D006207 1.1e-41 173.7 111 77.5
FAN15G0403 Fragaria x ananassa HOM05D004750 ORTHO05D006207 1.4e-41 173.3 111 77.5
Glyma.13G121500 Glycine max HOM05D004750 ORTHO05D006207 1.4e-41 173.3 117 72.6
Dinv34600 Davidia involucrata HOM05D004750 ORTHO05D006207 1.9e-41 172.9 112 78.6
TAR362G0996 Trochodendron aralioides HOM05D004750 ORTHO05D006207 1.9e-41 172.9 111 75.7
BraA05t19288Z Brassica rapa HOM05D004750 ORTHO05D006207 2.4e-41 172.6 120 72.5
Eucgr.B01530 Eucalyptus grandis HOM05D004750 ORTHO05D006207 2.4e-41 172.6 113 74.3
vmacro14850 Vaccinium macrocarpon HOM05D004750 ORTHO05D006207 2.4e-41 172.6 109 75.2
A05p02980 Brassica napus HOM05D004750 ORTHO05D006207 3.2e-41 172.2 120 73.3
AT2G42450 Arabidopsis thaliana HOM05D004750 ORTHO05D006207 4.2e-41 171.8 120 70.8
Lj1A64T37 Lonicera japonica HOM05D004750 ORTHO05D006207 4.2e-41 171.8 109 77.1
CARHR137490 Cardamine hirsuta HOM05D004750 ORTHO05D006207 5.4e-41 171.4 120 70.8
Cfa002398 Carpinus fangiana HOM05D004750 ORTHO05D006207 5.4e-41 171.4 113 73.5
Rhsim01G0266000 Rhododendron simsii HOM05D004750 ORTHO05D006207 5.4e-41 171.4 109 76.1
MBI18_g37354_MAGBIO Magnolia biondii HOM05D004750 ORTHO05D006207 7.1e-41 171.0 112 73.2
DCAR_012532 Daucus carota HOM05D004750 ORTHO05D006207 9.3e-41 170.6 125 68.8
Phvul.007G194900 Phaseolus vulgaris HOM05D004750 ORTHO05D006207 9.3e-41 170.6 117 71.8
Sc17g0000770 Simmondsia chinensis HOM05D004750 ORTHO05D006207 9.3e-41 170.6 112 72.3
TPR.G3576 Trifolium pratense HOM05D004750 ORTHO05D006207 9.3e-41 170.6 113 74.3
GSVIVG01028293001 Vitis vinifera HOM05D004750 ORTHO05D006207 1.2e-40 170.2 111 73.9
AL4G40900 Arabidopsis lyrata HOM05D004750 ORTHO05D006207 1.6e-40 169.9 113 72.6
C04p03600 Brassica napus HOM05D004750 ORTHO05D006207 1.6e-40 169.9 120 71.7
BolC4t21995H Brassica oleracea HOM05D004750 ORTHO05D006207 1.6e-40 169.9 120 71.7
Glyma.10G035200 Glycine max HOM05D004750 ORTHO05D006207 1.6e-40 169.9 115 73.0
THA.LOC104802241 Tarenaya hassleriana HOM05D004750 ORTHO05D006207 1.6e-40 169.9 112 75.0
VMungo0720G0257 Vigna mungo HOM05D004750 ORTHO05D006207 1.6e-40 169.9 117 70.9
Lsat_1_v5_gn_5_182081 Lactuca sativa HOM05D004750 ORTHO05D006207 2.1e-40 169.5 119 68.1
Cc01_g18500 Coffea canephora HOM05D004750 ORTHO05D006207 4.6e-40 168.3 108 75.0
HanXRQChr09g0249261 Helianthus annuus HOM05D004750 ORTHO05D006207 4.6e-40 168.3 119 68.9
Oeu026229.2 Olea europaea HOM05D004750 ORTHO05D006207 4.6e-40 168.3 109 73.4
Sp4g24590 Schrenkiella parvula HOM05D004750 ORTHO05D006207 6.0e-40 167.9 120 70.0
Ca_09693_v3 Cicer arietinum L. HOM05D004750 ORTHO05D006207 7.8e-40 167.5 119 70.6
arahy.Tifrunner.gnm1.ann1.58RJ2S Arachis hypogaea HOM05D004750 ORTHO05D006207 1.7e-39 166.4 109 75.2
Aa31LG1G24270 Aethionema arabicum HOM05D004750 ORTHO05D006207 3.0e-39 165.6 120 68.3
HanXRQChr01g0014351 Helianthus annuus HOM05D004750 ORTHO05D006207 3.0e-39 165.6 119 65.5
Lj5g0027127 Lotus japonicus HOM05D004750 ORTHO05D006207 3.0e-39 165.6 120 69.2
Solyc06g083920.4 Solanum lycopersicum HOM05D004750 ORTHO05D006207 3.0e-39 165.6 112 71.4
Medtr1g070195 Medicago truncatula HOM05D004750 ORTHO05D006207 3.9e-39 165.2 119 68.9
arahy.Tifrunner.gnm1.ann1.I9TYEM Arachis hypogaea HOM05D004750 ORTHO05D006207 5.1e-39 164.9 109 74.3
PSO017G3851 Papaver somniferum HOM05D004750 ORTHO05D006207 6.6e-39 164.5 112 68.8
PSO063G5405 Papaver somniferum HOM05D004750 ORTHO05D006207 6.6e-39 164.5 112 68.8
EL10Ac5g10422 Beta vulgaris HOM05D004750 ORTHO05D006207 8.7e-39 164.1 113 71.7
CAN.G771.23 Capsicum annuum HOM05D004750 ORTHO05D006207 8.7e-39 164.1 108 73.1
Sopen06g035320 Solanum pennellii HOM05D004750 ORTHO05D006207 1.1e-38 163.7 108 73.1
PGSC0003DMG400020145 Solanum tuberosum HOM05D004750 ORTHO05D006207 1.1e-38 163.7 108 73.1
MD05G1200600 Malus domestica HOM05D004750 ORTHO05D006207 1.9e-38 162.9 113 72.6
Nn3g19610 Nelumbo nucifera HOM05D004750 ORTHO05D006207 1.9e-38 162.9 112 71.4
Peaxi162Scf01530g00029 Petunia axillaris HOM05D004750 ORTHO05D006207 1.9e-38 162.9 108 74.1
Migut.N02195 Erythranthe guttata HOM05D004750 ORTHO05D006207 3.3e-38 162.2 109 72.5
Ah.11g049820 Amaranthus hybridus HOM05D004750 ORTHO05D006207 7.3e-38 161.0 111 70.3
CANSAT01G0335 Cannabis sativa HOM05D004750 ORTHO05D006207 1.6e-37 159.8 113 69.9
Os09g0571500 Oryza sativa ssp. japonica HOM05D004750 ORTHO05D006207 1.6e-37 159.8 108 68.5
Hund09589 Selenicereus undatus HOM05D004750 ORTHO05D006207 2.1e-37 159.5 109 69.7
SGA_v2.0_scaffold80G25776 Striga asiatica HOM05D004750 ORTHO05D006207 2.1e-37 159.5 108 69.4
Aqoxy2G03613 Aquilegia oxysepala HOM05D004750 ORTHO05D006207 2.8e-37 159.1 115 67.0
ATR0680G188 Amborella trichopoda HOM05D004750 ORTHO05D006207 4.8e-37 158.3 113 67.3
BcaB07g32727 Brassica carinata HOM05D004750 ORTHO05D006207 6.2e-37 157.9 120 68.3
ClCG09G008060 Citrullus lanatus HOM05D004750 ORTHO05D006207 8.1e-37 157.5 113 69.0
AUR62024737 Chenopodium quinoa HOM05D004750 ORTHO05D006207 1.1e-36 157.1 112 68.8
SalBow6G6555 Salvia bowleyana HOM05D004750 ORTHO05D006207 1.1e-36 157.1 108 69.4
BcaB04g17273 Brassica carinata HOM05D004750 ORTHO05D006207 1.4e-36 156.8 120 67.5
CDE05G0417 Ceratophyllum demersum HOM05D004750 ORTHO05D006207 1.8e-36 156.4 108 70.4
Zm00001eb095800 Zea mays HOM05D004750 ORTHO05D006207 5.3e-36 154.8 111 66.7
Nitab4.5_0004303g0040 Nicotiana tabacum HOM05D004750 ORTHO05D006207 6.9e-36 154.5 108 68.5
Nitab4.5_0000086g0140 Nicotiana tabacum HOM05D004750 ORTHO05D006207 9.0e-36 154.1 108 67.6
HPP92_007154 Vanilla planifolia HOM05D004750 ORTHO05D006207 1.5e-35 153.3 109 63.3
Peaxi162Scf00134g00912 Petunia axillaris HOM05D004750 ORTHO05D006207 2.0e-35 152.9 108 67.6
AUR62011896 Chenopodium quinoa HOM05D004750 ORTHO05D006207 9.9e-35 150.6 118 65.3
unitig_37.g12601 Utricularia gibba HOM05D004750 ORTHO05D006207 8.4e-34 147.5 115 61.7
Psat0s484g0120 Pisum sativum HOM05D004750 ORTHO05D006207 1.0e-31 140.6 119 63.0
Hma1.2p1_0273F.1_g109910 Hydrangea macrophylla HOM05D004750 ORTHO05D006207 3.9e-23 112.1 69 81.2
Actinidia21194 Actinidia chinensis HOM05D004750 ORTHO05D006207 1.5e-22 110.2 65 80.0
AagrBONN_evm.TU.Sc2ySwM_344.2086 Anthoceros agrestis HOM05D004750 ORTHO05D006207 3.3e-22 109.0 113 50.4
Haze_24596 Corylus avellana HOM05D004750 ORTHO05D006207 5.7e-22 108.2 69 76.8
Lsat_1_v5_gn_6_62980 Lactuca sativa HOM05D004750 ORTHO05D006207 1.3e-21 107.1 70 72.9
Lsat_1_v5_gn_2_26340 Lactuca sativa HOM05D004750 ORTHO05D006207 1.6e-21 106.7 70 72.9
FAN27G1042 Fragaria x ananassa HOM05D004750 ORTHO05D006207 2.1e-21 106.3 70 74.3
Actinidia09562 Actinidia chinensis HOM05D004750 ORTHO05D006207 8.2e-21 104.4 63 81.0
MD10G1187200 Malus domestica HOM05D004750 ORTHO05D006207 8.2e-21 104.4 99 57.6
DCAR_002681 Daucus carota HOM05D004750 ORTHO05D006207 1.1e-20 104.0 143 42.0
SEGI_11819 Sequoiadendron giganteum HOM05D004750 ORTHO05D006207 1.1e-20 104.0 70 72.9
Pp3c22_2890 Physcomitrium patens HOM05D004750 ORTHO05D006207 5.8e-19 98.2 111 41.4
Lsat_1_v5_gn_7_30320 Lactuca sativa HOM05D004750 ORTHO05D006207 7.6e-19 97.8 69 69.6
Lsat_1_v5_gn_5_93820 Lactuca sativa HOM05D001304 ORTHO05D006207 1.3e-18 97.1 66 72.7
SMO147G0111 Selaginella moellendorffii HOM05D004750 ORTHO05D006207 1.7e-18 96.7 110 46.4
Mapoly0007s0153 Marchantia polymorpha HOM05D004750 ORTHO05D006207 1.1e-17 94.0 109 45.9
MELO3C012746.2 Cucumis melo HOM05D004750 ORTHO05D006207 4.2e-17 92.0 118 44.9
Sabra02G0032600 Salix brachista HOM05D004750 ORTHO05D006207 1.3e-13 80.5 44 86.4
Lsat_1_v5_gn_4_28641 Lactuca sativa HOM05D004750 ORTHO05D006207 1.1e-12 77.4 62 66.1
CBR_g40789 Chara braunii HOM05D004750 ORTHO05D006207 4.5e-11 72.0 106 36.8
CBR_g51917 Chara braunii HOM05D004750 ORTHO05D006207 7.7e-11 71.2 122 33.6
FAN27G2220 Fragaria x ananassa HOM05D004750 ORTHO05D006207 1.7e-10 70.1 41 80.5
Pp3c8_16570 Physcomitrium patens HOM05D004750 ORTHO05D006207 3.2e-09 65.9 63 50.8
Mapoly0041s0124 Marchantia polymorpha HOM05D004750 ORTHO05D006207 1.8e-07 60.1 78 39.7
Haze_14996 Corylus avellana HOM05D004750 ORTHO05D006207 2.3e-07 59.7 44 61.4
SHI27055 Sapria himalayana HOM05D004750 ORTHO05D006207 3.0e-07 59.3 49 55.1
GSVIVG01035735001 Vitis vinifera HOM05D004750 ORTHO05D006207 1.5e-06 57.0 38 65.8


User provided reference genes

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