Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1773.8 889 100.0
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1639.4 889 92.6
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1595.9 889 89.5
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1583.9 903 88.6
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1456.8 887 81.5
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1395.2 892 79.5
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1380.5 898 78.2
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1379.0 922 75.6
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1370.9 895 76.8
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1370.5 896 77.3
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1355.1 867 78.7
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1355.1 875 78.5
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1349.3 886 78.3
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1347.8 891 77.1
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1345.5 891 76.9
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1343.6 891 77.0
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1340.5 926 74.3
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1337.8 970 71.0
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1331.2 891 77.0
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1327.0 895 75.2
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1321.2 888 75.5
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1306.2 883 75.7
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1299.6 891 76.2
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1297.7 905 74.1
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1294.6 895 76.3
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1293.5 892 73.8
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1285.8 884 74.5
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1285.4 889 75.0
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1283.5 894 73.9
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1278.1 885 76.0
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1275.4 892 74.2
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1273.1 905 72.9
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1272.7 891 75.0
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1268.1 882 75.5
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1262.3 899 72.5
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1262.3 913 72.7
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1261.9 884 71.5
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1261.5 887 72.0
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1261.1 894 72.0
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1260.0 915 73.6
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1258.4 891 74.3
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1258.4 886 72.7
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1255.0 882 73.5
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1255.0 899 72.4
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1254.6 890 72.6
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1251.5 885 72.9
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1251.1 888 73.0
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1250.7 888 72.4
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1249.6 890 71.5
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1249.2 878 73.8
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1246.1 872 73.3
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1243.0 886 72.0
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1242.3 885 71.9
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1240.3 884 71.8
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1238.4 896 72.7
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1236.1 913 70.6
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1235.3 902 70.1
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1235.3 920 70.7
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1234.6 886 70.2
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1232.6 887 70.0
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1232.2 886 70.3
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1231.5 883 72.1
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1228.8 891 68.8
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1227.6 903 71.1
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1226.8 879 73.0
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1224.9 884 73.0
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1220.3 878 71.4
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1214.5 902 70.5
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1214.1 886 71.9
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1214.1 899 70.6
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1213.7 933 69.6
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1212.2 879 72.6
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1203.3 887 68.5
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1203.0 900 69.4
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1203.0 900 69.4
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1194.1 894 68.6
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1194.1 894 68.7
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1171.8 897 68.0
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1171.0 755 78.0
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1170.6 890 68.0
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1170.2 887 68.9
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1167.1 892 68.2
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1166.4 916 66.2
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1162.5 892 67.8
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1161.0 896 67.7
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1156.4 892 67.0
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1156.0 909 67.1
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1154.0 906 67.0
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1143.6 910 67.1
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1140.2 888 66.2
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1139.8 886 67.5
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1136.3 873 67.7
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1135.9 874 67.6
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1135.2 891 66.3
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1131.3 889 66.9
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1129.4 894 66.1
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1129.0 907 66.8
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1128.6 901 66.9
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1126.7 892 67.3
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1125.9 908 67.7
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1124.0 897 66.3
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1121.3 900 66.3
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1121.3 902 66.1
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1118.2 890 65.8
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1117.8 900 66.2
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1116.7 910 66.8
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1112.4 898 65.9
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1110.9 883 64.8
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1109.7 903 66.0
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1105.1 889 64.3
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 0.0e+00 1104.0 910 65.1
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1103.2 903 65.8
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1101.3 890 65.5
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1090.1 939 62.2
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 0.0e+00 1087.8 812 69.7
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1078.5 905 64.0
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 6.0e-310 1067.4 864 66.0
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 7.8e-310 1067.0 786 70.2
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 5.8e-305 1050.8 920 63.4
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.4e-303 1046.2 906 61.6
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.6e-299 1032.7 879 62.5
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 8.4e-296 1020.4 879 64.5
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 1.2e-294 1016.5 980 57.7
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 8.7e-293 1010.4 643 78.2
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 1.5e-292 1009.6 854 64.9
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.5e-289 999.6 891 61.6
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 4.9e-288 994.6 886 59.3
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.2e-287 991.5 888 61.6
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 8.8e-277 957.2 931 57.0
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.5e-276 955.7 884 59.7
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 8.2e-275 950.7 588 78.9
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 9.4e-271 937.2 805 60.2
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 9.7e-260 900.6 892 54.0
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 7.7e-257 891.0 812 56.4
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 9.4e-255 884.0 900 52.7
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.8e-250 869.8 890 53.9
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.7e-248 863.2 889 53.0
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 3.8e-248 862.1 890 52.4
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 1.2e-244 850.5 792 56.8
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 1.2e-244 850.5 597 74.0
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 8.6e-240 834.3 801 54.8
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.2e-235 819.7 621 65.1
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 5.1e-208 728.8 572 61.9
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 5.6e-207 725.3 871 44.3
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 9.3e-202 708.0 870 44.7
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 3.6e-198 696.0 886 43.5
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.3e-195 687.6 635 60.3
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 6.6e-192 675.2 635 59.2
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 6.7e-184 648.7 613 51.9
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 1.3e-176 624.4 884 44.0
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 1.4e-173 614.4 578 57.6
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 2.1e-145 520.8 525 54.3
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 4.1e-141 506.5 568 46.0
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.1e-141 506.5 429 62.2
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 5.0e-115 419.9 597 38.7
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.5e-111 408.3 511 45.6
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.9e-109 401.4 496 48.0
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 6.0e-108 396.4 401 56.9
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.5e-98 365.2 264 67.4
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 5.1e-91 340.1 698 31.2
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 8.7e-83 312.8 225 64.9
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 2.5e-82 311.2 264 60.2
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 5.3e-72 276.9 175 74.3
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 1.8e-67 261.9 520 30.6
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.9e-58 231.9 157 72.0
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 1.3e-57 229.2 433 30.9
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 2.1e-36 158.7 190 51.6
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 1.1e-32 146.4 363 38.0
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 4.7e-20 104.4 65 76.9
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 2.3e-19 102.1 74 68.9
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 8.8e-19 100.1 72 62.5
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 3.7e-17 94.7 198 37.4
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.2e-15 89.7 123 47.2
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 1.6e-12 79.3 74 59.5


User provided reference genes

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