Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.0e-254 882.1 485 100.0
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 2.2e-226 788.9 460 93.9
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.7e-221 771.5 486 85.4
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 2.2e-213 745.7 501 80.4
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.6e-203 713.0 486 76.1
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.6e-195 686.4 486 71.6
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 1.3e-194 683.3 485 72.4
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.3e-194 682.6 486 72.4
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.5e-193 679.9 486 72.2
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 4.7e-192 674.9 486 70.8
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.6e-187 659.8 495 69.3
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 2.7e-187 659.1 486 69.5
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 5.2e-183 644.8 486 67.9
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 7.8e-179 630.9 487 70.8
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.0e-178 630.6 489 70.6
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.5e-177 626.7 462 69.0
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 2.9e-173 612.5 462 68.0
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 4.9e-173 611.7 488 64.1
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 1.1e-172 610.5 494 65.4
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 3.2e-172 609.0 492 65.2
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 2.1e-171 606.3 492 64.6
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 6.0e-171 604.7 487 64.7
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.8e-170 603.2 493 63.9
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.5e-169 600.1 492 67.1
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 4.3e-169 598.6 486 67.9
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 5.6e-169 598.2 492 66.1
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 7.4e-169 597.8 497 64.4
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 1.3e-168 597.0 491 67.0
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.2e-168 594.7 507 65.1
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 3.4e-166 589.0 486 62.8
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 4.5e-166 588.6 486 65.2
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 7.6e-166 587.8 461 69.2
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 2.9e-165 585.9 485 61.6
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 4.2e-164 582.0 486 64.2
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.1e-164 581.3 486 63.8
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.2e-163 580.5 494 63.4
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 1.0e-162 577.4 487 62.0
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 5.1e-162 575.1 486 63.8
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 6.2e-160 568.2 489 58.9
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.8e-159 566.6 487 61.6
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.5e-158 563.5 499 64.3
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.6e-158 562.8 517 59.0
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.0e-157 560.8 399 70.9
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.0e-157 560.8 495 62.4
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 1.3e-157 560.5 496 62.9
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.9e-157 559.3 485 58.8
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 3.8e-157 558.9 499 63.9
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 6.5e-157 558.1 490 59.2
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 2.5e-156 556.2 487 61.0
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 9.3e-156 554.3 489 57.5
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 9.3e-156 554.3 487 57.5
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.5e-155 552.4 478 60.3
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 4.6e-155 552.0 486 61.3
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 7.9e-155 551.2 486 61.9
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.3e-154 550.4 476 60.5
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.3e-154 550.4 513 61.6
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 6.3e-152 541.6 500 59.0
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 8.2e-152 541.2 499 57.9
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.6e-150 536.2 493 61.3
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.6e-150 536.2 509 57.0
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 3.4e-150 535.8 491 56.4
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.0e-149 534.3 489 62.4
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.3e-149 533.9 486 60.1
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.7e-149 533.5 500 58.4
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.2e-148 528.9 462 60.4
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 9.3e-148 527.7 491 59.1
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 3.6e-147 525.8 490 55.3
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.0e-146 524.2 498 57.4
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.0e-146 524.2 486 60.7
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 3.9e-146 522.3 490 55.3
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 5.1e-146 521.9 489 60.1
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 6.7e-146 521.5 494 59.9
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 2.5e-145 519.6 486 56.8
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 4.3e-145 518.8 494 60.1
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 7.4e-145 518.1 488 58.2
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 1.3e-144 517.3 492 61.4
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.3e-144 517.3 432 68.1
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.7e-144 516.9 493 55.8
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.7e-144 516.9 447 64.0
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 3.7e-144 515.8 495 58.0
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 8.2e-144 514.6 486 58.6
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 2.4e-143 513.1 491 56.2
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 2.0e-142 510.0 483 58.2
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 5.9e-142 508.4 495 59.8
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 2.2e-141 506.5 493 56.6
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.4e-140 503.8 520 55.6
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 2.5e-140 503.1 489 53.2
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 2.5e-140 503.1 548 56.0
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 4.2e-140 502.3 463 56.6
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 4.2e-140 502.3 487 54.4
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 9.4e-140 501.1 482 54.8
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 9.4e-140 501.1 452 61.9
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.2e-139 500.7 485 56.5
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 2.7e-139 499.6 486 56.4
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 7.9e-139 498.0 423 62.4
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 7.9e-139 498.0 404 63.9
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.0e-138 497.7 491 53.0
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.8e-138 496.9 487 55.2
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.3e-138 496.5 511 56.4
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 3.0e-138 496.1 488 56.4
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 8.8e-138 494.6 488 56.4
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.5e-137 493.8 490 56.3
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.5e-137 493.8 496 57.3
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 3.3e-137 492.7 489 56.0
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 4.4e-137 492.3 508 53.0
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 9.7e-137 491.1 486 56.8
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.3e-136 490.7 487 53.4
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.8e-135 486.9 485 55.5
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 6.9e-135 485.0 473 56.0
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 3.4e-134 482.6 487 53.2
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 5.9e-134 481.9 576 48.4
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 5.9e-134 481.9 453 62.5
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 1.3e-133 480.7 491 52.5
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 5.0e-133 478.8 485 52.8
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.5e-133 478.0 534 52.2
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.5e-132 476.5 534 52.1
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 6.1e-131 471.9 491 50.9
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 9.7e-129 464.5 488 53.5
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 8.2e-128 461.5 487 55.0
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 2.5e-124 449.9 462 58.9
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.0e-122 444.5 490 52.4
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.4e-122 444.1 486 50.8
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 6.7e-122 441.8 467 55.9
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 2.0e-121 440.3 400 55.2
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.6e-121 439.9 389 56.6
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 2.7e-118 429.9 468 50.2
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 7.5e-113 411.8 503 50.9
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 8.3e-112 408.3 485 48.7
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 4.2e-108 396.0 488 49.4
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 1.1e-103 381.3 488 47.1
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.0e-102 377.1 450 50.9
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 5.9e-102 375.6 396 57.3
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.2e-94 351.3 412 48.8
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 4.3e-92 342.8 216 73.6
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 9.5e-92 341.7 216 74.5
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.6e-91 340.9 487 46.6
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.1e-90 338.2 496 45.8
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 6.4e-88 328.9 448 43.1
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 4.1e-87 326.2 345 55.7
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 7.0e-87 325.5 453 39.5
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 5.6e-84 315.8 409 46.9
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 7.3e-84 315.5 371 44.7
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.1e-83 313.9 308 49.4
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.0e-81 307.4 303 48.5
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 1.5e-76 291.2 222 60.8
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 1.9e-76 290.8 299 49.2
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.5e-68 264.6 174 70.7
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 1.6e-54 218.0 317 49.2
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 1.3e-51 208.4 219 54.3
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.1e-50 205.3 156 66.0
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 1.4e-50 204.9 270 47.4
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.5e-49 199.9 134 65.7
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 3.4e-41 173.7 247 36.4
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 1.5e-36 158.3 257 33.5
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 1.1e-31 142.1 190 37.4
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 3.2e-31 140.6 95 67.4
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.2e-30 138.7 228 47.8
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 8.5e-24 115.9 76 67.1
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.7e-22 110.2 91 58.2
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 5.3e-18 96.7 60 73.3
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 1.5e-17 95.1 123 50.4
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 1.2e-14 85.5 116 46.6
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 2.0e-09 68.2 43 74.4
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 5.9e-09 66.6 73 49.3
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 2.2e-08 64.7 55 56.4
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 3.2e-07 60.8 71 39.4


User provided reference genes

Program Settings