Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G038200 Populus trichocarpa HOM05D007363 ORTHO05D009018 1.0e-79 300.1 155 100.0
Potri.005G224600 Populus trichocarpa HOM05D007363 ORTHO05D009018 2.5e-70 268.9 150 90.7
Sabra05G0173300 Salix brachista HOM05D007363 ORTHO05D009018 6.8e-68 260.8 150 88.7
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 1.6e-56 223.0 151 77.5
TWI18G0555 Tripterygium wilfordii HOM05D007363 ORTHO05D009018 9.5e-54 213.8 156 71.2
Atru.chr5.1691 Acer truncatum HOM05D007363 ORTHO05D009018 3.1e-52 208.8 148 72.3
CSS0036840 Camellia sinensis var. sinensis HOM05D007363 ORTHO05D009018 6.8e-52 207.6 142 72.5
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 8.9e-52 207.2 154 70.8
Actinidia25792 Actinidia chinensis HOM05D007363 ORTHO05D009018 1.5e-51 206.5 144 73.6
Ciclev10024115m.g Citrus clementina HOM05D007363 ORTHO05D009018 1.5e-51 206.5 123 81.3
Nn3g19660 Nelumbo nucifera HOM05D007363 ORTHO05D009018 1.5e-51 206.5 167 65.9
GSVIVG01028336001 Vitis vinifera HOM05D007363 ORTHO05D009018 5.8e-51 204.5 154 70.1
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 2.9e-50 202.2 161 65.2
Prupe.8G223500 Prunus persica HOM05D007363 ORTHO05D009018 2.9e-50 202.2 146 70.5
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 8.4e-50 200.7 161 65.2
Cfa002427 Carpinus fangiana HOM05D007363 ORTHO05D009018 1.9e-49 199.5 144 71.5
Duzib133G1388 Durio zibethinus HOM05D007363 ORTHO05D009018 1.9e-49 199.5 152 69.1
Lj1C66G14 Lonicera japonica HOM05D007363 ORTHO05D009018 2.4e-49 199.1 148 70.3
MD05G1197000 Malus domestica HOM05D007363 ORTHO05D009018 2.4e-49 199.1 148 68.2
Oeu026230.1 Olea europaea HOM05D007363 ORTHO05D009018 4.2e-49 198.4 146 69.2
CiPaw.04G186800 Carya illinoinensis HOM05D007363 ORTHO05D009018 1.2e-48 196.8 153 66.0
Dinv22404 Davidia involucrata HOM05D007363 ORTHO05D009018 1.6e-48 196.4 153 70.6
Duzib138G0908 Durio zibethinus HOM05D007363 ORTHO05D009018 1.6e-48 196.4 152 68.4
Rhsim01G0263400 Rhododendron simsii HOM05D007363 ORTHO05D009018 2.1e-48 196.1 143 69.9
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 3.5e-48 195.3 156 62.2
Thecc.01G258000 Theobroma cacao HOM05D007363 ORTHO05D009018 1.3e-47 193.4 126 75.4
Hma1.2p1_0576F.1_g182050 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 1.7e-47 193.0 122 78.7
QL09p038775 Quercus lobata HOM05D007363 ORTHO05D009018 2.3e-47 192.6 158 67.1
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 5.6e-46 188.0 139 66.9
Gorai.001G177500 Gossypium raimondii HOM05D007363 ORTHO05D009018 5.6e-46 188.0 155 64.5
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 5.6e-46 188.0 124 73.4
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 7.3e-46 187.6 155 63.9
Gohir.D07G155100 Gossypium hirsutum HOM05D007363 ORTHO05D009018 1.3e-45 186.8 155 64.5
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 1.3e-45 186.8 149 64.4
DCAR_000936 Daucus carota HOM05D007363 ORTHO05D009018 1.6e-45 186.4 156 61.5
Sopen06g035280 Solanum pennellii HOM05D007363 ORTHO05D009018 2.1e-45 186.0 124 71.0
FAN20G0360 Fragaria x ananassa HOM05D007363 ORTHO05D009018 3.6e-45 185.3 151 62.3
Lsat_1_v5_gn_9_8480 Lactuca sativa HOM05D007363 ORTHO05D009018 3.6e-45 185.3 145 64.1
PGSC0003DMG400020073 Solanum tuberosum HOM05D007363 ORTHO05D009018 4.8e-45 184.9 124 71.0
RcHm_v2.0_Chr6g0288091 Rosa chinensis HOM05D007363 ORTHO05D009018 6.2e-45 184.5 149 63.8
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 8.1e-45 184.1 131 69.5
Nitab4.5_0020962g0010 Nicotiana tabacum HOM05D007363 ORTHO05D009018 8.1e-45 184.1 158 60.8
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 1.1e-44 183.7 154 62.3
FAN24G0389 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.1e-44 183.7 142 63.4
Lalb_Chr01g0019641 Lupinus albus HOM05D007363 ORTHO05D009018 1.1e-44 183.7 124 70.2
Solyc06g083880.2 Solanum lycopersicum HOM05D007363 ORTHO05D009018 1.1e-44 183.7 141 62.4
FvH4_2g21450 Fragaria vesca HOM05D007363 ORTHO05D009018 1.4e-44 183.3 149 62.4
Phvul.001G161200 Phaseolus vulgaris HOM05D007363 ORTHO05D009018 1.4e-44 183.3 148 61.5
HanXRQChr10g0280941 Helianthus annuus HOM05D007363 ORTHO05D009018 1.8e-44 183.0 141 64.5
Glyma.03G163300 Glycine max HOM05D007363 ORTHO05D009018 2.4e-44 182.6 148 62.2
Cc01_g18330 Coffea canephora HOM05D007363 ORTHO05D009018 3.1e-44 182.2 124 69.4
arahy.Tifrunner.gnm1.ann1.1CEJ34 Arachis hypogaea HOM05D007363 ORTHO05D009018 4.0e-44 181.8 148 62.2
VMungo1383G1059 Vigna mungo HOM05D007363 ORTHO05D009018 6.9e-44 181.0 148 60.8
AT2G20515 Arabidopsis thaliana HOM05D007363 ORTHO05D009018 1.5e-43 179.9 146 64.4
arahy.Tifrunner.gnm1.ann1.F24DAH Arachis hypogaea HOM05D007363 ORTHO05D009018 2.0e-43 179.5 148 62.2
CARHR111060 Cardamine hirsuta HOM05D007363 ORTHO05D009018 2.6e-43 179.1 144 65.3
ECA247G1846 Erigeron canadensis HOM05D007363 ORTHO05D009018 3.4e-43 178.7 148 61.5
AL3G53530 Arabidopsis lyrata HOM05D007363 ORTHO05D009018 4.4e-43 178.3 146 63.0
ATR0736G122 Amborella trichopoda HOM05D007363 ORTHO05D009018 5.8e-43 177.9 147 63.3
THA.LOC104814517 Tarenaya hassleriana HOM05D007363 ORTHO05D009018 7.6e-43 177.6 151 59.6
FAN15G0604 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.3e-42 176.8 138 63.8
AUR62024717 Chenopodium quinoa HOM05D007363 ORTHO05D009018 1.7e-42 176.4 126 69.0
Sp3g33740 Schrenkiella parvula HOM05D007363 ORTHO05D009018 1.7e-42 176.4 146 63.7
Carub.0003s3497 Capsella rubella HOM05D007363 ORTHO05D009018 2.2e-42 176.0 148 63.5
Cpa.g.sc165.9 Carica papaya HOM05D007363 ORTHO05D009018 2.2e-42 176.0 139 61.2
Ca_08677_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 4.9e-42 174.9 123 68.3
Ca_08711_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 4.9e-42 174.9 123 68.3
BraA03t10685Z Brassica rapa HOM05D007363 ORTHO05D009018 6.4e-42 174.5 153 61.4
BcaB01g04373 Brassica carinata HOM05D007363 ORTHO05D009018 8.4e-42 174.1 147 62.6
ClCG09G007810 Citrullus lanatus HOM05D007363 ORTHO05D009018 1.4e-41 173.3 152 60.5
Thhalv10002113m.g Eutrema salsugineum HOM05D007363 ORTHO05D009018 1.4e-41 173.3 145 64.8
BcaB08g34913 Brassica carinata HOM05D007363 ORTHO05D009018 2.4e-41 172.6 151 61.6
A03p13820 Brassica napus HOM05D007363 ORTHO05D009018 5.4e-41 171.4 153 61.4
Psat3g056960 Pisum sativum HOM05D007363 ORTHO05D009018 5.4e-41 171.4 123 65.9
BcaC01g06392 Brassica carinata HOM05D007363 ORTHO05D009018 1.2e-40 170.2 147 62.6
C03p16260 Brassica napus HOM05D007363 ORTHO05D009018 1.2e-40 170.2 147 62.6
BolC3t14048H Brassica oleracea HOM05D007363 ORTHO05D009018 1.2e-40 170.2 147 62.6
SalBow6G5236 Salvia bowleyana HOM05D007363 ORTHO05D009018 1.2e-40 170.2 140 62.1
Medtr7g096960 Medicago truncatula HOM05D007363 ORTHO05D009018 2.1e-40 169.5 148 56.8
Haze_24634 Corylus avellana HOM05D007363 ORTHO05D009018 3.5e-40 168.7 115 72.2
EL10Ac5g10397 Beta vulgaris HOM05D007363 ORTHO05D009018 1.7e-39 166.4 147 61.2
SGA_v2.0_scaffold510G52612 Striga asiatica HOM05D007363 ORTHO05D009018 3.9e-39 165.2 141 58.9
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 8.7e-39 164.1 149 59.7
CsaV3_7G027320 Cucumis sativus L. HOM05D007363 ORTHO05D009018 2.5e-38 162.5 153 56.2
Eucgr.K03259 Eucalyptus grandis HOM05D007363 ORTHO05D009018 2.5e-38 162.5 163 56.4
Eucgr.L02952 Eucalyptus grandis HOM05D007363 ORTHO05D009018 2.5e-38 162.5 163 56.4
MELO3C015729.2 Cucumis melo HOM05D007363 ORTHO05D009018 1.6e-37 159.8 141 57.4
Ah.02g111990 Amaranthus hybridus HOM05D007363 ORTHO05D009018 2.8e-37 159.1 128 64.1
Migut.N02204 Erythranthe guttata HOM05D007363 ORTHO05D009018 3.6e-37 158.7 156 55.8
Sed0008485 Sechium edule HOM05D007363 ORTHO05D009018 3.6e-37 158.7 125 62.4
unitig_0.g703 Utricularia gibba HOM05D007363 ORTHO05D009018 3.1e-36 155.6 153 53.6
Os04g0517000 Oryza sativa ssp. japonica HOM05D007363 ORTHO05D009018 2.0e-35 152.9 123 61.0
PGR042G3583 Punica granatum HOM05D007363 ORTHO05D009018 4.5e-35 151.8 149 58.4
Zm00001eb077670 Zea mays HOM05D007363 ORTHO05D009018 4.5e-35 151.8 122 60.7
MBI10_g08049_MAGBIO Magnolia biondii HOM05D007363 ORTHO05D009018 2.4e-33 146.0 109 67.0
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 2.7e-32 142.5 106 67.0
Hma1.2p1_0576F.1_g182040 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 1.8e-31 139.8 86 79.1
Lj2P297T63 Lonicera japonica HOM05D007363 ORTHO05D009018 6.5e-26 121.3 97 67.0
SEGI_29869 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 5.5e-25 118.2 140 45.7
FAN27G1204 Fragaria x ananassa HOM05D007363 ORTHO05D009018 4.6e-24 115.2 83 68.7
Lsat_1_v5_gn_3_73760 Lactuca sativa HOM05D007363 ORTHO05D009018 9.0e-20 100.9 114 43.9
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 3.5e-16 89.0 67 68.7
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.0e-15 87.4 108 44.4
Lj5P53T14 Lonicera japonica HOM05D007363 ORTHO05D009018 2.5e-14 82.8 77 58.4
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.3e-13 80.5 108 39.8
Mapoly0037s0134 Marchantia polymorpha HOM05D007363 ORTHO05D009018 1.1e-12 77.4 113 41.6
Lj6P94T4 Lonicera japonica HOM05D007363 ORTHO05D009018 5.9e-11 71.6 58 65.5
Lj6P297T4 Lonicera japonica HOM05D007363 ORTHO05D009018 1.7e-10 70.1 58 65.5
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 2.5e-09 66.2 110 36.4
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 3.2e-09 65.9 104 39.4
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 6.1e-08 61.6 103 35.0
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 5.1e-07 58.5 87 36.8
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 6.7e-07 58.2 110 32.7
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 1.5e-06 57.0 103 31.1
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 2.0e-06 56.6 86 37.2
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 2.0e-06 56.6 106 34.0
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 2.0e-06 56.6 107 31.8
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 2.5e-06 56.2 86 34.9
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 2.5e-06 56.2 86 33.7
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 2.5e-06 56.2 106 33.0
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 3.3e-06 55.8 86 33.7
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 3.3e-06 55.8 86 34.9
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 4.3e-06 55.5 111 31.5
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 4.3e-06 55.5 111 31.5
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 4.3e-06 55.5 111 31.5
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 4.3e-06 55.5 113 31.9
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 4.3e-06 55.5 88 37.5
Ah.01g001950 Amaranthus hybridus HOM05D003750 ORTHO05D004337 5.7e-06 55.1 71 40.8
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 5.7e-06 55.1 119 31.1
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 5.7e-06 55.1 109 33.0
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 7.4e-06 54.7 103 31.1
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 7.4e-06 54.7 86 32.6
HanXRQChr17g0565411 Helianthus annuus HOM05D003750 ORTHO05D004337 7.4e-06 54.7 111 31.5
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 7.4e-06 54.7 103 33.0
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 9.7e-06 54.3 87 33.3
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 9.7e-06 54.3 86 34.9


User provided reference genes

Program Settings