Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 9.4e-237 823.5 553 100.0
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 2.1e-159 566.6 607 70.2
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 3.2e-128 463.0 533 64.9
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 1.1e-125 454.5 549 69.0
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 2.0e-98 364.0 591 53.0
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 7.3e-96 355.5 572 55.4
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 1.3e-89 334.7 597 50.4
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 5.2e-86 322.8 599 46.2
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 7.5e-85 318.9 616 49.4
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 1.7e-81 307.8 579 52.2
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 4.9e-76 289.7 696 43.2
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 4.9e-76 289.7 569 43.2
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 4.9e-76 289.7 569 43.2
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 6.4e-76 289.3 264 57.6
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.0e-73 282.0 613 41.9
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 2.5e-72 277.3 262 56.9
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 8.1e-71 272.3 581 42.9
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 1.1e-70 271.9 342 48.5
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 6.4e-68 262.7 408 45.1
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 8.4e-68 262.3 349 46.1
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 1.7e-65 254.6 191 66.0
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 1.7e-65 254.6 366 45.9
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 1.5e-64 251.5 220 58.6
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 2.8e-63 247.3 257 50.2
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 1.8e-62 244.6 272 49.6
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 5.2e-62 243.0 222 55.9
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 6.8e-62 242.7 270 50.0
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 1.7e-60 238.0 341 42.5
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 2.2e-60 237.7 357 42.6
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 1.6e-58 231.5 359 41.8
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 3.5e-58 230.3 258 51.6
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.7e-57 228.0 257 45.5
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 1.7e-57 228.0 356 41.0
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.3e-57 227.6 269 46.1
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 2.1e-55 221.1 237 49.8
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 3.6e-55 220.3 267 46.8
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 2.4e-54 217.6 238 51.3
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 9.0e-54 215.7 353 38.0
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 1.2e-53 215.3 266 44.7
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 2.0e-53 214.5 342 40.9
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 7.6e-53 212.6 274 48.5
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 4.2e-51 206.8 341 40.8
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 4.2e-51 206.8 220 46.4
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 5.4e-51 206.5 263 47.9
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 1.2e-50 205.3 258 43.8
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 1.2e-50 205.3 243 45.7
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.6e-50 204.9 263 45.6
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 4.6e-50 203.4 272 44.1
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.3e-49 201.8 337 41.5
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 1.7e-49 201.4 357 38.7
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 5.1e-49 199.9 347 37.8
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 1.5e-48 198.4 262 44.7
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.5e-48 197.6 336 39.3
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.3e-48 197.2 336 39.0
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 4.3e-48 196.8 370 35.9
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 7.4e-48 196.1 388 36.9
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.6e-47 194.9 253 48.2
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 4.8e-47 193.4 195 52.8
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 6.2e-47 193.0 354 37.9
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 9.0e-46 189.1 550 33.3
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 1.5e-45 188.3 225 47.6
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 2.6e-45 187.6 246 47.6
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 9.9e-45 185.7 203 50.2
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 1.7e-44 184.9 252 42.9
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 3.2e-43 180.6 279 41.6
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 1.6e-42 178.3 263 41.8
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 1.6e-42 178.3 285 39.3
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 2.1e-42 177.9 253 43.5
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 2.7e-42 177.6 255 42.4
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 3.0e-41 174.1 254 42.9
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 1.1e-40 172.2 253 44.7
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 1.5e-40 171.8 182 50.5
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 2.5e-40 171.0 251 44.2
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 3.3e-40 170.6 216 45.8
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 3.3e-40 170.6 264 41.7
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 5.6e-40 169.9 549 36.2
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 7.4e-40 169.5 221 48.9
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 7.4e-40 169.5 216 47.2
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 1.6e-39 168.3 255 41.2
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 2.8e-39 167.5 238 45.0
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 9.0e-38 162.5 249 41.4
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 1.2e-37 162.2 259 39.4
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 2.6e-37 161.0 262 39.7
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 1.0e-36 159.1 268 36.6
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.0e-36 159.1 337 32.6
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 2.9e-36 157.5 385 33.0
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 3.2e-35 154.1 258 38.8
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 7.1e-35 152.9 337 32.0
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 1.6e-34 151.8 190 48.9
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 4.6e-34 150.2 218 42.7
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 7.9e-34 149.4 258 41.9
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.0e-33 149.1 264 38.6
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 2.3e-33 147.9 277 40.8
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 3.9e-33 147.1 270 38.9
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 8.7e-33 146.0 355 33.0
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 3.3e-32 144.1 352 32.7
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 4.3e-32 143.7 276 39.5
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 4.3e-32 143.7 189 46.6
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 7.4e-32 142.9 216 38.0
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 2.1e-31 141.4 219 43.8
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 2.8e-31 141.0 333 33.9
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 6.3e-31 139.8 187 49.2
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 2.4e-30 137.9 211 41.2
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 4.1e-30 137.1 335 32.5
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 4.1e-30 137.1 334 32.0
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 1.2e-29 135.6 267 36.0
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 2.6e-29 134.4 211 44.1
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 7.6e-29 132.9 360 31.4
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 1.0e-28 132.5 206 36.4
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.3e-28 132.1 212 39.6
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 3.8e-28 130.6 352 33.0
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 2.5e-27 127.9 176 47.2
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 3.2e-27 127.5 275 32.7
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 5.5e-27 126.7 188 45.7
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 8.7e-25 119.4 286 34.3
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 2.6e-21 107.8 242 36.0
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 3.4e-21 107.5 478 41.6
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 1.9e-19 101.7 477 41.1
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 3.9e-17 94.0 506 36.8
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 5.7e-16 90.1 316 29.1
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 7.4e-16 89.7 142 47.2
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 2.2e-15 88.2 315 28.6
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.2e-13 82.4 114 41.2
DCAR_020977 Daucus carota HOM05D006278 ORTHO05D007526 5.5e-11 73.6 314 26.1
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.8e-09 68.6 171 33.9
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 3.9e-09 67.4 154 38.3
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 8.8e-09 66.2 168 32.7
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 2.0e-08 65.1 107 41.1
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 5.7e-08 63.5 120 36.7
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 7.4e-08 63.2 103 40.8
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 7.4e-08 63.2 111 38.7
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 7.4e-08 63.2 122 35.2
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 9.7e-08 62.8 108 40.7
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 2.2e-07 61.6 104 41.3
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 2.2e-07 61.6 212 29.2
SEGI_14478 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.2e-07 61.6 117 35.9
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 2.8e-07 61.2 105 38.1
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 3.7e-07 60.8 191 30.4
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 6.3e-07 60.1 159 33.3
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 8.2e-07 59.7 106 38.7
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 1.1e-06 59.3 129 33.3
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 1.1e-06 59.3 104 38.5
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 1.1e-06 59.3 169 32.0
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 1.1e-06 59.3 267 28.1
Zm00001eb309990 Zea mays HOM05D065992 ORTHO05D037126 1.1e-06 59.3 225 25.8
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 1.4e-06 58.9 285 25.3
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 1.8e-06 58.5 103 39.8
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 2.4e-06 58.2 117 36.8
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 2.4e-06 58.2 114 39.5
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 2.4e-06 58.2 106 37.7
CDE02G1230 Ceratophyllum demersum HOM05D004242 ORTHO05D004349 3.1e-06 57.8 105 40.0
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 3.1e-06 57.8 107 38.3
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 4.1e-06 57.4 108 31.5
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 4.1e-06 57.4 109 39.4
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 4.1e-06 57.4 158 31.0
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 4.1e-06 57.4 105 39.0
ATR0796G195 Amborella trichopoda HOM05D004242 ORTHO05D004349 5.3e-06 57.0 104 35.6
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 5.3e-06 57.0 117 35.0


User provided reference genes

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