Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 1.0e-221 773.1 378 100.0
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 1.2e-187 659.8 358 91.6
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 3.9e-125 452.2 334 69.8
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 4.5e-121 438.7 338 67.2
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 6.4e-120 434.9 366 63.4
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 1.9e-119 433.3 329 66.9
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 3.2e-119 432.6 313 69.6
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 1.6e-118 430.3 338 65.4
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 6.0e-118 428.3 309 70.9
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 7.9e-118 427.9 349 64.5
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 1.0e-117 427.6 338 63.6
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 5.1e-117 425.2 355 62.3
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 5.1e-117 425.2 350 65.1
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 1.3e-115 420.6 347 64.6
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 2.1e-115 419.9 308 67.9
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 2.4e-114 416.4 312 65.7
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.2e-113 414.1 330 62.7
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 2.6e-113 412.9 302 68.2
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 9.9e-113 411.0 312 65.4
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 9.9e-113 411.0 313 66.8
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 2.9e-112 409.5 341 62.2
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 2.9e-112 409.5 332 64.2
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 6.4e-112 408.3 281 74.7
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 3.2e-111 406.0 334 61.4
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 5.5e-111 405.2 336 60.4
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 4.6e-110 402.1 316 65.5
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 5.6e-108 395.2 304 64.5
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 9.6e-108 394.4 354 59.3
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 2.8e-107 392.9 317 63.1
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 1.8e-106 390.2 350 58.6
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 3.1e-106 389.4 309 64.1
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 4.0e-106 389.0 362 59.1
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 5.3e-106 388.7 339 58.7
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 1.2e-105 387.5 325 61.5
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 1.2e-105 387.5 326 62.0
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 1.2e-105 387.5 335 59.1
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 2.0e-105 386.7 338 60.9
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 2.6e-105 386.3 356 58.7
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 1.0e-104 384.4 325 61.5
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 2.2e-104 383.3 297 65.7
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 2.9e-104 382.9 322 61.5
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 8.4e-104 381.3 300 63.0
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 1.4e-103 380.6 337 60.8
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 1.4e-103 380.6 362 56.4
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 1.9e-103 380.2 300 62.3
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 1.9e-103 380.2 299 62.9
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 4.2e-103 379.0 302 61.9
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 9.3e-103 377.9 349 55.0
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 2.1e-102 376.7 333 57.4
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 3.5e-102 375.9 323 61.3
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 1.0e-101 374.4 305 61.0
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 1.3e-101 374.0 357 55.7
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 2.3e-101 373.2 355 55.8
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 6.7e-101 371.7 303 63.7
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 5.7e-100 368.6 323 58.5
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 7.4e-100 368.2 360 52.5
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 1.3e-99 367.5 333 56.8
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 1.3e-99 367.5 356 55.6
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 1.6e-99 367.1 311 59.8
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 6.3e-99 365.2 348 54.9
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 8.2e-99 364.8 309 60.2
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 1.1e-98 364.4 311 59.8
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 1.1e-98 364.4 337 57.0
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 1.8e-98 363.6 300 61.3
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 5.3e-98 362.1 321 58.3
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 9.0e-98 361.3 362 53.9
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 9.0e-98 361.3 352 54.3
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 1.5e-97 360.5 278 65.1
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 2.6e-97 359.8 285 64.6
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 4.5e-97 359.0 326 57.7
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 7.6e-97 358.2 361 53.5
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 8.5e-96 354.8 327 57.8
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 1.1e-95 354.4 330 56.4
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 1.4e-95 354.0 285 63.2
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 3.2e-95 352.8 351 54.4
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 7.2e-95 351.7 347 53.3
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 1.6e-94 350.5 250 70.0
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 8.7e-93 344.7 303 56.8
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 8.2e-91 338.2 248 68.1
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 1.1e-90 337.8 244 70.5
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 2.4e-90 336.7 317 54.6
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 4.1e-90 335.9 304 57.6
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 1.5e-89 334.0 303 56.4
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 2.0e-89 333.6 246 66.3
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.7e-88 330.5 246 65.4
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 2.2e-88 330.1 355 50.7
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 3.8e-88 329.3 277 58.1
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 2.5e-87 326.6 309 55.0
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 4.2e-87 325.9 335 53.4
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 9.1e-82 308.1 273 57.9
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 2.6e-81 306.6 340 48.8
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 1.4e-79 300.8 383 45.7
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 3.2e-79 299.7 326 53.7
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 2.3e-77 293.5 294 51.0
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 3.9e-77 292.7 312 50.0
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 7.7e-73 278.5 300 49.0
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.1e-66 258.1 190 66.3
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 3.7e-59 233.0 219 55.3
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 4.8e-59 232.6 307 43.6
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 3.5e-57 226.5 276 47.1
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 1.6e-54 217.6 324 40.1
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 8.8e-53 211.8 311 41.2
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 2.7e-49 200.3 301 39.9
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 6.6e-48 195.7 168 60.7
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 1.9e-47 194.1 364 36.8
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 2.6e-44 183.7 409 30.8
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 1.2e-30 138.3 186 41.9
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 1.8e-29 134.4 216 36.6
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 1.5e-28 131.3 323 32.5
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 2.0e-28 131.0 107 57.9
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.1e-21 107.1 147 43.5
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 1.5e-20 104.8 112 48.2
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 1.1e-18 98.6 128 45.3
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 1.9e-15 87.8 66 63.6
COL.COLO4_19820 Corchorus olitorius HOM05D001041 ORTHO05D000846 2.5e-07 60.8 51 64.7


User provided reference genes

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