Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 6.4e-260 900.2 447 100.0
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 5.6e-232 807.4 445 90.8
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 4.2e-211 738.0 445 84.7
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 4.3e-208 728.0 447 80.1
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 1.5e-197 693.0 441 78.0
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 2.3e-185 652.5 444 71.2
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 4.0e-185 651.7 445 70.6
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 2.5e-171 605.9 443 68.4
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 3.3e-171 605.5 438 68.0
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 2.8e-170 602.4 439 66.7
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 6.8e-169 597.8 439 65.6
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 8.3e-167 590.9 439 67.0
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 1.1e-166 590.5 450 63.6
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 9.2e-166 587.4 444 67.1
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 1.6e-165 586.6 437 67.0
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 2.7e-165 585.9 438 66.2
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 1.7e-164 583.2 438 66.2
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 2.3e-164 582.8 438 66.0
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 5.0e-164 581.6 439 64.5
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 2.8e-162 575.9 439 65.4
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 1.8e-161 573.2 447 64.2
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 2.3e-161 572.8 448 63.2
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 2.6e-160 569.3 442 63.6
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 7.5e-160 567.8 436 65.1
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 2.9e-159 565.8 439 65.1
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 1.9e-158 563.1 448 64.1
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 2.7e-157 559.3 441 62.8
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 1.1e-155 553.9 436 62.8
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 1.9e-155 553.1 444 62.8
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 2.8e-154 549.3 455 60.7
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 2.3e-153 546.2 444 61.5
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 5.2e-153 545.0 443 60.5
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 8.9e-153 544.3 433 62.4
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.5e-152 543.5 434 61.8
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 4.4e-152 542.0 443 59.8
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 2.9e-151 539.3 436 60.1
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 1.4e-150 537.0 435 62.3
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 1.4e-150 537.0 438 60.3
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 1.9e-150 536.6 440 60.5
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 2.4e-150 536.2 444 59.5
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 3.2e-150 535.8 436 61.0
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 4.1e-150 535.4 433 61.7
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 1.2e-149 533.9 439 61.5
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.2e-149 533.9 368 67.9
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 1.6e-149 533.5 438 60.3
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 1.0e-148 530.8 443 60.5
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 1.7e-148 530.0 439 60.1
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 2.3e-148 529.6 426 60.8
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 3.9e-148 528.9 443 58.5
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 6.6e-148 528.1 436 60.3
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 8.6e-148 527.7 350 70.6
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 2.5e-147 526.2 442 59.3
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 9.5e-147 524.2 429 62.5
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 9.5e-147 524.2 353 68.8
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 9.5e-147 524.2 444 59.2
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 1.2e-146 523.9 369 68.0
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 2.8e-146 522.7 369 67.8
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 2.8e-146 522.7 440 60.2
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 2.8e-146 522.7 440 60.2
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 4.7e-146 521.9 436 62.2
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 1.4e-145 520.4 443 58.2
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 1.8e-145 520.0 432 60.4
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 3.1e-145 519.2 442 59.5
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 5.2e-145 518.5 443 58.5
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 5.2e-145 518.5 432 60.2
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 1.5e-144 516.9 350 70.3
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 1.5e-144 516.9 439 58.8
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 2.0e-144 516.5 451 57.9
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 5.8e-144 515.0 456 57.2
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 1.3e-143 513.8 359 67.4
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 1.7e-143 513.5 443 58.2
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 2.2e-143 513.1 418 59.6
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 2.2e-143 513.1 462 56.3
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 2.9e-143 512.7 424 59.9
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 3.7e-143 512.3 358 66.5
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 4.9e-143 511.9 441 58.7
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 4.9e-143 511.9 441 58.7
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 4.9e-143 511.9 441 58.7
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.1e-142 510.8 437 58.8
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 1.4e-142 510.4 435 58.6
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 2.4e-142 509.6 448 56.7
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 2.4e-142 509.6 440 59.3
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 3.2e-142 509.2 404 62.4
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 5.4e-142 508.4 434 58.8
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 9.2e-142 507.7 446 57.4
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 9.2e-142 507.7 441 57.8
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 1.2e-141 507.3 376 64.9
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 1.6e-141 506.9 345 67.2
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 2.7e-141 506.1 369 64.8
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 6.0e-141 505.0 362 65.7
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 1.0e-140 504.2 435 57.9
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 1.0e-140 504.2 434 56.9
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 1.3e-140 503.8 353 66.6
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 3.0e-140 502.7 441 56.9
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 3.9e-140 502.3 437 57.9
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 3.9e-140 502.3 369 65.3
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 1.9e-139 500.0 431 56.6
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 3.3e-139 499.2 350 65.7
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 7.3e-139 498.0 436 58.5
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 7.3e-139 498.0 348 65.8
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 1.2e-138 497.3 429 56.6
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 1.6e-138 496.9 429 57.1
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 1.6e-138 496.9 429 57.1
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 1.6e-138 496.9 429 57.1
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 2.8e-138 496.1 425 56.7
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 4.7e-138 495.4 446 58.1
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 6.2e-138 495.0 444 56.1
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 6.2e-138 495.0 361 65.4
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 6.2e-138 495.0 436 57.6
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 1.2e-136 490.7 442 57.0
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 2.0e-136 490.0 411 59.1
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 4.4e-136 488.8 363 62.5
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 1.3e-135 487.3 350 65.4
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 1.0e-132 477.6 431 58.0
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 1.7e-132 476.9 434 54.6
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 3.9e-132 475.7 428 57.7
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 3.9e-132 475.7 345 64.9
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 3.3e-131 472.6 427 59.7
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 2.1e-130 469.9 427 57.4
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 3.1e-129 466.1 291 72.9
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 3.1e-129 466.1 430 57.0
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 4.0e-129 465.7 346 63.0
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 5.3e-129 465.3 428 56.3
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 2.0e-128 463.4 427 56.4
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 2.6e-128 463.0 242 88.8
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 9.9e-128 461.1 438 52.7
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 9.9e-128 461.1 428 57.0
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 9.9e-128 461.1 423 55.1
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 2.2e-127 459.9 352 61.9
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.1e-126 457.6 437 52.2
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 2.4e-126 456.4 340 62.4
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 2.4e-126 456.4 424 54.5
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 7.1e-126 454.9 316 68.7
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 1.2e-125 454.1 351 61.3
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 1.1e-121 441.0 461 52.1
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 1.2e-120 437.6 354 57.9
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.4e-118 430.6 426 50.5
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 9.3e-118 427.9 250 76.8
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.6e-114 417.2 354 57.3
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 6.9e-113 411.8 354 57.1
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 1.1e-110 404.4 250 72.0
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 1.8e-105 387.1 343 54.2
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.2e-104 384.4 380 51.6
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 2.5e-102 376.7 347 52.7
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 6.7e-100 368.6 305 58.0
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 1.2e-96 357.8 370 46.5
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 1.5e-96 357.5 343 50.4
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 2.0e-96 357.1 402 47.0
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 3.4e-96 356.3 365 47.9
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 4.5e-96 355.9 289 64.4
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 8.5e-95 351.7 440 45.2
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 7.2e-94 348.6 340 48.8
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 1.6e-93 347.4 244 63.9
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 1.4e-92 344.4 338 50.3
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 4.3e-91 339.3 365 46.6
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 3.8e-87 326.2 341 46.9
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 4.2e-86 322.8 237 59.9
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.3e-84 317.0 348 46.3
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 3.3e-83 313.2 385 44.9
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 4.7e-77 292.7 237 55.3
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 7.4e-75 285.4 346 40.8
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 4.8e-74 282.7 432 39.1
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 4.8e-74 282.7 349 41.5
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 5.3e-73 279.3 342 41.8
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 5.3e-73 279.3 352 40.9
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 2.6e-72 276.9 343 43.4
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 5.0e-71 272.7 339 41.3
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 1.0e-68 265.0 240 49.2
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.6e-64 251.1 347 38.9
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 1.2e-56 224.9 373 37.0
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 1.9e-41 174.5 149 58.4
Potri.012G136700 Populus trichocarpa HOM05D003764 ORTHO05D004356 1.0e-39 168.7 137 67.2
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 8.9e-36 155.6 428 28.5
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 1.7e-31 141.4 154 46.1
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 1.6e-24 118.2 85 58.8
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.4e-20 104.4 100 45.0
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.1e-17 95.5 119 37.0
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 7.1e-17 92.8 79 46.8
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 5.6e-14 83.2 86 40.7
ATR0555G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.2e-10 71.2 68 38.2
ATR0138G019 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.4e-09 67.8 109 38.5
Prupe.6G163800 Prunus persica HOM05D003764 ORTHO05D335910 1.0e-07 62.4 53 64.2
Nn1g01454 Nelumbo nucifera HOM05D003764 ORTHO05D004356 1.3e-07 62.0 45 66.7


User provided reference genes

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