Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 7.7e-247 856.7 426 100.0
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 2.4e-224 781.9 426 90.4
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 2.7e-223 778.5 420 91.2
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 9.5e-205 716.8 418 83.7
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.1e-203 713.4 426 81.9
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 5.6e-197 691.0 424 79.0
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 3.6e-196 688.3 430 79.8
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 1.5e-194 682.9 422 77.3
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 2.6e-194 682.2 434 79.3
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.4e-194 681.4 404 81.7
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 9.9e-194 680.2 429 77.2
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 2.9e-193 678.7 428 78.5
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 8.4e-193 677.2 428 78.3
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 1.9e-192 676.0 432 77.3
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 4.2e-192 674.9 425 76.2
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 1.6e-191 672.9 423 78.7
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 1.3e-190 669.8 404 79.2
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 2.3e-190 669.1 411 78.3
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.3e-189 665.2 434 75.6
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 3.3e-189 665.2 389 81.7
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 3.3e-189 665.2 439 74.9
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.1e-188 662.5 422 76.8
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 3.6e-188 661.8 428 75.2
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 3.6e-188 661.8 426 76.8
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 8.1e-188 660.6 427 75.6
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 1.1e-187 660.2 414 77.3
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 3.1e-187 658.7 422 76.3
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 5.3e-187 657.9 440 73.2
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.2e-186 656.8 438 74.2
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 3.4e-186 655.2 402 77.6
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 4.5e-186 654.8 430 74.0
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.2e-185 652.5 423 75.2
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.9e-185 652.1 422 75.8
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 8.4e-185 650.6 414 75.6
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 8.4e-185 650.6 413 76.8
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 1.1e-184 650.2 404 77.5
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 1.4e-184 649.8 408 75.7
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 1.4e-184 649.8 422 75.4
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.9e-184 649.4 414 75.4
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 2.4e-184 649.0 428 74.5
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 5.4e-184 647.9 424 73.3
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 5.4e-184 647.9 435 73.3
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 1.2e-183 646.7 438 73.7
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 1.6e-183 646.4 414 75.4
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 2.1e-183 646.0 435 72.9
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 4.6e-183 644.8 408 75.5
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 6.0e-183 644.4 408 75.5
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 6.0e-183 644.4 408 75.5
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 7.9e-183 644.0 408 75.5
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 7.9e-183 644.0 435 73.3
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 7.9e-183 644.0 418 73.9
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 1.0e-182 643.7 427 74.0
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.0e-182 643.7 436 73.4
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.0e-182 643.7 404 76.2
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.5e-181 639.8 430 71.6
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 5.6e-181 637.9 433 72.1
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 7.4e-181 637.5 414 75.8
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 9.6e-181 637.1 426 73.9
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 2.8e-180 635.6 413 73.6
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 6.2e-180 634.4 429 71.3
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 6.2e-180 634.4 414 75.6
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 6.2e-180 634.4 431 71.5
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 1.5e-178 629.8 418 72.5
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 2.6e-178 629.0 411 73.7
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 5.8e-178 627.9 431 71.2
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 7.6e-178 627.5 423 71.6
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.2e-177 625.9 400 75.2
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 4.9e-177 624.8 406 73.2
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 2.1e-175 619.4 423 73.5
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 2.1e-175 619.4 427 71.7
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 4.6e-175 618.2 422 71.8
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 1.8e-174 616.3 411 71.8
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 3.0e-174 615.5 445 67.6
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 1.5e-173 613.2 417 72.4
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 4.3e-173 611.7 417 71.9
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 4.3e-173 611.7 393 76.1
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 5.6e-173 611.3 432 69.9
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 6.2e-172 607.8 422 70.1
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 1.1e-171 607.1 487 64.5
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 3.1e-171 605.5 465 65.8
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 4.5e-170 601.7 396 73.0
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 5.8e-170 601.3 410 71.2
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 8.4e-169 597.4 421 70.1
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 2.1e-167 592.8 460 65.2
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 2.7e-167 592.4 389 73.3
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.3e-166 590.1 385 71.7
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.3e-166 590.1 390 70.0
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 5.7e-165 584.7 420 68.1
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 7.4e-165 584.3 414 67.9
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 2.9e-161 572.4 382 70.4
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 5.5e-160 568.2 365 74.0
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 6.1e-159 564.7 338 77.5
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 2.5e-157 559.3 423 66.4
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 1.4e-155 553.5 357 73.9
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 1.8e-155 553.1 427 62.5
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 5.3e-155 551.6 371 70.4
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 7.9e-151 537.7 400 68.0
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.8e-150 536.6 402 63.7
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 3.9e-150 535.4 328 76.8
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 4.1e-147 525.4 401 64.6
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 2.6e-146 522.7 338 74.9
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 2.7e-143 512.7 380 63.9
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 3.0e-142 509.2 394 63.7
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 3.1e-139 499.2 302 77.8
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.6e-138 496.9 397 60.5
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 5.9e-138 495.0 440 58.9
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 7.7e-138 494.6 389 64.8
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 1.7e-137 493.4 415 60.0
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 2.2e-137 493.0 398 61.8
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 7.2e-136 488.0 298 76.5
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 5.2e-134 481.9 344 66.3
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.4e-133 478.8 344 65.7
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.8e-131 473.4 344 65.4
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 3.6e-127 459.1 283 80.2
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 6.3e-116 421.8 270 76.7
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 2.0e-109 400.2 285 68.4
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 1.1e-102 377.9 308 57.5
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 1.7e-100 370.5 331 53.8
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 1.7e-92 344.0 274 59.9
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 1.6e-90 337.4 402 44.5
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 3.5e-90 336.3 221 69.2
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 2.1e-82 310.5 213 70.9
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 9.9e-77 291.6 204 66.2
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 3.0e-73 280.0 318 45.0
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 6.6e-73 278.9 179 74.3
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 1.5e-72 277.7 230 62.6
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 5.4e-67 259.2 231 53.7
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 5.4e-67 259.2 207 59.9
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 2.0e-61 240.7 145 78.6
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 2.4e-54 217.2 149 72.5
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 7.2e-43 179.1 291 38.5
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.0e-41 175.3 115 66.1
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 3.3e-40 170.2 117 62.4
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 1.1e-35 155.2 134 52.2
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 2.7e-34 150.6 156 53.2
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 3.3e-32 143.7 121 59.5
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 3.5e-29 133.7 181 40.3
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 2.9e-28 130.6 94 70.2
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 2.7e-26 124.0 416 26.0
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 1.3e-23 115.2 296 31.4
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 1.7e-20 104.8 63 69.8
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 3.4e-16 90.5 52 75.0
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 1.7e-15 88.2 58 67.2
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 8.5e-12 75.9 66 56.1
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 4.4e-08 63.5 90 40.0
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 4.4e-08 63.5 90 40.0


User provided reference genes

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