Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1660.6 802 100.0
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1580.1 805 94.2
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1484.2 803 89.8
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1450.6 807 87.2
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1343.9 803 79.1
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1310.8 804 77.1
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1302.7 803 77.5
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1297.3 804 75.9
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1290.4 800 75.8
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1284.6 803 76.2
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1279.6 803 75.7
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1278.8 802 74.9
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1276.9 803 76.0
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1276.5 800 75.0
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1269.2 803 74.5
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1259.2 803 74.1
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1253.0 816 73.4
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1252.7 803 73.3
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1252.3 838 72.0
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1249.6 801 74.8
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1245.7 801 74.5
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1242.3 801 74.3
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1237.6 803 72.6
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1233.8 819 71.4
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1228.4 800 73.9
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1223.4 812 72.8
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1222.6 807 71.5
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1221.1 803 71.2
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1216.4 839 68.9
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1214.1 804 73.3
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1209.9 803 70.6
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1209.1 803 71.7
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1207.6 802 71.6
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1204.9 833 70.2
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1194.9 886 67.4
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1183.3 803 68.5
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1181.8 803 69.6
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1181.8 800 69.5
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1176.4 803 68.0
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1172.5 805 67.8
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 0.0e+00 1166.8 806 68.5
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1166.8 804 67.7
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1164.1 772 71.1
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1163.3 804 69.2
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 0.0e+00 1162.9 804 67.7
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1162.5 804 69.0
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1161.7 804 69.3
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1159.8 758 72.4
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 0.0e+00 1157.5 807 67.7
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1156.7 802 68.6
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1155.6 839 65.1
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1154.4 800 69.6
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 0.0e+00 1153.3 806 67.9
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1153.3 814 67.7
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 0.0e+00 1152.1 806 67.7
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1151.7 801 68.0
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1151.3 803 68.5
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1150.6 806 68.7
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1149.8 804 68.0
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1146.0 804 68.3
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 0.0e+00 1143.3 806 67.4
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1142.9 853 64.7
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 0.0e+00 1138.3 806 67.0
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1137.5 800 67.5
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 0.0e+00 1137.1 801 67.4
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1137.1 803 67.5
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 0.0e+00 1130.9 844 64.6
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 0.0e+00 1129.8 800 66.2
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1129.4 807 67.7
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1127.1 803 67.7
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 0.0e+00 1126.7 807 67.0
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 0.0e+00 1126.3 803 67.1
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1120.5 806 67.1
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1120.5 806 67.1
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1119.4 846 63.2
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 0.0e+00 1113.2 852 63.4
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 0.0e+00 1106.7 785 66.8
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 0.0e+00 1100.1 801 66.7
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 0.0e+00 1090.5 797 65.6
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 0.0e+00 1078.5 804 67.2
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 7.3e-307 1057.0 802 63.6
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 1.1e-302 1043.1 802 61.6
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 1.1e-302 1043.1 805 61.2
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 2.7e-301 1038.5 710 70.8
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 1.1e-299 1033.1 711 69.9
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 1.4e-294 1016.1 804 59.7
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 2.6e-288 995.3 730 65.8
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 1.3e-271 939.9 610 75.4
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 3.2e-262 908.7 611 71.5
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 1.4e-257 893.3 598 70.7
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 1.2e-253 880.2 805 55.2
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 4.5e-224 781.9 616 60.2
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 1.7e-223 780.0 833 48.4
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 1.6e-221 773.5 608 62.5
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 1.3e-210 737.3 829 47.8
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 4.3e-198 695.7 826 44.2
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.3e-178 630.9 533 58.0
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 1.2e-176 624.4 454 67.2
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 3.9e-175 619.4 457 66.5
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 1.3e-159 567.8 372 73.9
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 3.1e-148 530.0 587 46.0
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 4.7e-144 516.2 461 54.0
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 2.2e-141 507.3 446 55.6
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 3.9e-135 486.5 401 61.1
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 3.7e-133 479.9 468 50.6
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 9.8e-126 455.3 315 67.3
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 3.0e-111 407.1 340 64.1
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 9.2e-108 395.6 237 84.8
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 1.5e-94 351.7 193 79.8
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 7.3e-89 332.8 306 56.9
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.0e-78 298.1 267 54.7
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 5.8e-78 296.6 149 89.3
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 1.3e-74 285.4 509 36.3
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 3.3e-73 280.8 146 83.6
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 4.5e-54 217.2 123 71.5
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 2.9e-53 214.5 860 25.6
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 1.3e-50 205.7 195 46.7
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 2.3e-50 204.9 147 59.9
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 3.5e-43 181.0 193 49.7
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 3.8e-37 161.0 93 73.1
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 1.5e-30 139.0 79 75.9
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 2.6e-22 111.7 54 87.0
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.7e-21 109.0 194 35.6
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 2.4e-15 88.6 80 51.2
Sopen12g028640 Solanum pennellii HOM05D001597 ORTHO05D001512 6.3e-08 63.9 196 26.5
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 1.8e-07 62.4 52 51.9
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 4.1e-07 61.2 154 30.5
A03p31920 Brassica napus HOM05D001597 ORTHO05D001512 7.0e-07 60.5 261 26.8
BolC3t16166H Brassica oleracea HOM05D001597 ORTHO05D001512 9.1e-07 60.1 261 26.1
Solyc12g056130.2 Solanum lycopersicum HOM05D001597 ORTHO05D001512 9.1e-07 60.1 176 27.3
BcaC01g06849 Brassica carinata HOM05D001597 ORTHO05D001512 1.2e-06 59.7 261 26.1
PGSC0003DMG400004985 Solanum tuberosum HOM05D001597 ORTHO05D001512 1.2e-06 59.7 167 29.3
Ah.12g052180 Amaranthus hybridus HOM05D001597 ORTHO05D001512 1.6e-06 59.3 167 30.5
C03p38940 Brassica napus HOM05D001597 ORTHO05D001512 2.0e-06 58.9 261 26.1
BraA03t12364Z Brassica rapa HOM05D001597 ORTHO05D001512 3.5e-06 58.2 233 27.0
PSO478G0932 Papaver somniferum HOM05D002322 ORTHO05D002536 3.5e-06 58.2 152 28.3
Pp3c19_11580 Physcomitrium patens HOM05D001597 ORTHO05D001512 4.5e-06 57.8 253 24.1
Sed0005870 Sechium edule HOM05D001597 ORTHO05D001512 4.5e-06 57.8 220 27.7
Atru.chr5.607 Acer truncatum HOM05D001597 ORTHO05D001512 7.7e-06 57.0 224 28.1


User provided reference genes

Program Settings