Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.001G193600 Populus trichocarpa HOM05D001194 ORTHO05D005909 5.4e-130 467.6 230 100.0
Potri.001G199600 Populus trichocarpa HOM05D001194 ORTHO05D005909 2.1e-105 386.0 267 76.8
Sabra01G0156300 Salix brachista HOM05D001194 ORTHO05D005909 4.6e-105 384.8 266 76.7
Manes.04G137500 Manihot esculenta HOM05D001194 ORTHO05D005909 1.5e-100 369.8 267 73.0
Atru.chr1.3635 Acer truncatum HOM05D001194 ORTHO05D005909 1.3e-99 366.7 267 72.3
CiPaw.01G227200 Carya illinoinensis HOM05D001194 ORTHO05D005909 1.3e-99 366.7 267 72.3
QL05p015826 Quercus lobata HOM05D001194 ORTHO05D005909 1.3e-99 366.7 266 71.8
CANSAT56G1148 Cannabis sativa HOM05D001194 ORTHO05D005909 6.5e-99 364.4 267 71.2
CsaV3_3G044050 Cucumis sativus L. HOM05D001194 ORTHO05D005909 1.4e-98 363.2 267 70.8
Sed0016739 Sechium edule HOM05D001194 ORTHO05D005909 1.4e-98 363.2 267 70.8
ClCG07G013590 Citrullus lanatus HOM05D001194 ORTHO05D005909 1.9e-98 362.8 268 70.5
GSVIVG01016891001 Vitis vinifera HOM05D001194 ORTHO05D005909 3.2e-98 362.1 267 71.2
TWI79G1226 Tripterygium wilfordii HOM05D001194 ORTHO05D005909 9.4e-98 360.5 267 71.2
PGR102G0345 Punica granatum HOM05D001194 ORTHO05D005909 1.2e-97 360.1 267 69.3
Eucgr.J02887 Eucalyptus grandis HOM05D001194 ORTHO05D005909 1.6e-97 359.8 267 71.2
Sed0012613 Sechium edule HOM05D001194 ORTHO05D005909 1.6e-97 359.8 267 70.8
Glyma.07G012500 Glycine max HOM05D001194 ORTHO05D005909 2.7e-97 359.0 267 71.5
Haze_15919 Corylus avellana HOM05D001194 ORTHO05D005909 3.6e-97 358.6 267 71.2
Dinv37933 Davidia involucrata HOM05D001194 ORTHO05D005909 3.6e-97 358.6 268 70.1
Glyma.08G196200 Glycine max HOM05D001194 ORTHO05D005909 4.7e-97 358.2 267 71.2
TAR626G1853 Trochodendron aralioides HOM05D001194 ORTHO05D005909 4.7e-97 358.2 267 69.3
Cfa003606 Carpinus fangiana HOM05D001194 ORTHO05D005909 1.4e-96 356.7 267 70.8
Prupe.3G052600 Prunus persica HOM05D001194 ORTHO05D005909 1.4e-96 356.7 267 69.7
arahy.Tifrunner.gnm1.ann1.2JHZ20 Arachis hypogaea HOM05D001194 ORTHO05D005909 2.3e-96 355.9 267 69.7
arahy.Tifrunner.gnm1.ann1.U81MKX Arachis hypogaea HOM05D001194 ORTHO05D005909 2.3e-96 355.9 267 69.7
Medtr8g015600 Medicago truncatula HOM05D001194 ORTHO05D005909 2.3e-96 355.9 267 69.7
MD09G1196200 Malus domestica HOM05D001194 ORTHO05D005909 3.0e-96 355.5 267 68.9
VMungo0331G0168 Vigna mungo HOM05D001194 ORTHO05D005909 3.0e-96 355.5 267 70.4
Psat4g194400 Pisum sativum HOM05D001194 ORTHO05D005909 5.1e-96 354.8 267 69.7
Phvul.010G141900 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 6.7e-96 354.4 267 70.4
Thecc.06G107800 Theobroma cacao HOM05D001194 ORTHO05D005909 8.8e-96 354.0 267 69.7
Lalb_Chr04g0263101 Lupinus albus HOM05D001194 ORTHO05D005909 1.1e-95 353.6 267 69.7
Phvul.010G142000 Phaseolus vulgaris HOM05D001194 ORTHO05D005909 1.1e-95 353.6 267 70.0
VMungo0331G0238 Vigna mungo HOM05D001194 ORTHO05D005909 1.5e-95 353.2 267 70.0
Nn6g35406 Nelumbo nucifera HOM05D001194 ORTHO05D005909 5.7e-95 351.3 267 67.8
Duzib235G0439 Durio zibethinus HOM05D001194 ORTHO05D005909 1.3e-94 350.1 267 68.2
COL.COLO4_30608 Corchorus olitorius HOM05D001194 ORTHO05D005909 1.7e-94 349.7 267 68.2
Dinv30399 Davidia involucrata HOM05D001194 ORTHO05D005909 2.2e-94 349.4 268 69.0
arahy.Tifrunner.gnm1.ann1.3FEZ81 Arachis hypogaea HOM05D001194 ORTHO05D005909 2.8e-94 349.0 265 67.9
Gohir.D10G063800 Gossypium hirsutum HOM05D001194 ORTHO05D005909 6.3e-94 347.8 267 67.8
Gorai.011G067700 Gossypium raimondii HOM05D001194 ORTHO05D005909 6.3e-94 347.8 267 67.8
Gohir.A10G062100 Gossypium hirsutum HOM05D001194 ORTHO05D005909 8.2e-94 347.4 267 67.8
MSTRG.22605 Avicennia marina HOM05D001194 ORTHO05D005909 1.8e-93 346.3 267 71.5
PGSC0003DMG402006819 Solanum tuberosum HOM05D001194 ORTHO05D005909 3.1e-93 345.5 267 71.2
Peaxi162Scf00087g00133 Petunia axillaris HOM05D001194 ORTHO05D005909 4.1e-93 345.1 267 71.2
Lj3g0001136 Lotus japonicus HOM05D001194 ORTHO05D005909 7.0e-93 344.4 265 67.9
Aqoxy7G01307 Aquilegia oxysepala HOM05D001194 ORTHO05D005909 1.2e-92 343.6 267 65.5
Solyc01g068210.3 Solanum lycopersicum HOM05D001194 ORTHO05D005909 1.5e-92 343.2 267 70.0
Sopen01g030150 Solanum pennellii HOM05D001194 ORTHO05D005909 1.5e-92 343.2 267 70.0
Cc04_g02210 Coffea canephora HOM05D001194 ORTHO05D005909 2.0e-92 342.8 267 70.0
RcHm_v2.0_Chr2g0142511 Rosa chinensis HOM05D001194 ORTHO05D005909 2.0e-92 342.8 267 66.3
FAN09G1927 Fragaria x ananassa HOM05D001194 ORTHO05D005909 2.6e-92 342.4 267 66.3
CAN.G410.38 Capsicum annuum HOM05D001194 ORTHO05D005909 4.5e-92 341.7 267 70.0
MELO3C013031.2 Cucumis melo HOM05D001194 ORTHO05D005909 5.9e-92 341.3 238 73.5
Lj3g0000235 Lotus japonicus HOM05D001194 ORTHO05D005909 1.0e-91 340.5 268 66.4
Nn8g38927 Nelumbo nucifera HOM05D001194 ORTHO05D005909 2.9e-91 339.0 267 65.2
Migut.D00978 Erythranthe guttata HOM05D001194 ORTHO05D005909 3.8e-91 338.6 267 68.5
FAN02G4259 Fragaria x ananassa HOM05D001194 ORTHO05D005909 5.0e-91 338.2 267 65.5
Duzib160G0082 Durio zibethinus HOM05D001194 ORTHO05D005909 8.5e-91 337.4 288 62.5
Ah.01g004470 Amaranthus hybridus HOM05D001194 ORTHO05D005909 1.9e-90 336.3 267 65.9
Lj5A49T38 Lonicera japonica HOM05D001194 ORTHO05D005909 2.5e-90 335.9 279 68.1
Nitab4.5_0001543g0050 Nicotiana tabacum HOM05D001194 ORTHO05D005909 9.4e-90 334.0 273 68.9
RcHm_v2.0_Chr2g0142481 Rosa chinensis HOM05D001194 ORTHO05D005909 9.4e-90 334.0 269 65.1
HanXRQChr09g0276311 Helianthus annuus HOM05D001194 ORTHO05D005909 1.6e-89 333.2 267 68.9
Actinidia21741 Actinidia chinensis HOM05D001194 ORTHO05D005909 4.7e-89 331.6 262 66.0
CSS0021774 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 6.1e-89 331.3 262 66.0
CSS0002183 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 1.0e-88 330.5 262 65.6
CSS0036616 Camellia sinensis var. sinensis HOM05D001194 ORTHO05D005909 1.0e-88 330.5 262 65.6
Hund00742 Selenicereus undatus HOM05D001194 ORTHO05D005909 1.8e-88 329.7 258 66.7
unitig_748.g7452 Utricularia gibba HOM05D001194 ORTHO05D005909 2.3e-88 329.3 267 67.0
EL10Ac9g21120 Beta vulgaris HOM05D001194 ORTHO05D005909 3.9e-88 328.6 270 64.4
ECA232G0548 Erigeron canadensis HOM05D001194 ORTHO05D005909 5.2e-88 328.2 267 66.7
SGA_v2.0_scaffold71G23749 Striga asiatica HOM05D001194 ORTHO05D005909 5.2e-88 328.2 267 67.4
Lsat_1_v5_gn_4_96000 Lactuca sativa HOM05D001194 ORTHO05D005909 8.8e-88 327.4 267 67.4
vmacro18821 Vaccinium macrocarpon HOM05D001194 ORTHO05D005909 8.8e-88 327.4 262 64.9
DCAR_031424 Daucus carota HOM05D001194 ORTHO05D005909 1.5e-87 326.6 267 66.7
AUR62023909 Chenopodium quinoa HOM05D001194 ORTHO05D005909 2.0e-87 326.2 260 65.8
THA.LOC104805919 Tarenaya hassleriana HOM05D001194 ORTHO05D005909 3.3e-87 325.5 267 63.3
AUR62038337 Chenopodium quinoa HOM05D001194 ORTHO05D005909 1.3e-86 323.6 258 65.9
Oeu039981.1 Olea europaea HOM05D001194 ORTHO05D005909 2.4e-85 319.3 238 73.1
PSO063G4370 Papaver somniferum HOM05D001194 ORTHO05D005909 2.6e-84 315.8 267 61.0
PSO832G2057 Papaver somniferum HOM05D001194 ORTHO05D005909 2.6e-84 315.8 267 61.0
AL1G59660 Arabidopsis lyrata HOM05D001194 ORTHO05D005909 1.3e-83 313.5 267 60.3
Thhalv10011312m.g Eutrema salsugineum HOM05D001194 ORTHO05D005909 1.3e-83 313.5 267 60.3
Sp1g38360 Schrenkiella parvula HOM05D001194 ORTHO05D005909 1.3e-83 313.5 267 60.3
Aa31LG10G3090 Aethionema arabicum HOM05D001194 ORTHO05D005909 1.7e-83 313.2 267 60.7
CARHR041880 Cardamine hirsuta HOM05D001194 ORTHO05D005909 1.7e-83 313.2 267 60.3
BcaB07g33628 Brassica carinata HOM05D001194 ORTHO05D005909 3.8e-83 312.0 267 59.9
BcaC08g43332 Brassica carinata HOM05D001194 ORTHO05D005909 3.8e-83 312.0 267 59.9
A08p02540 Brassica napus HOM05D001194 ORTHO05D005909 3.8e-83 312.0 267 59.9
C06p06880 Brassica napus HOM05D001194 ORTHO05D005909 3.8e-83 312.0 267 59.9
BraA08t32294Z Brassica rapa HOM05D001194 ORTHO05D005909 3.8e-83 312.0 267 59.9
AT1G51720 Arabidopsis thaliana HOM05D001194 ORTHO05D005909 5.0e-83 311.6 267 59.9
A06p02290 Brassica napus HOM05D001194 ORTHO05D005909 6.5e-83 311.2 267 59.9
C03p90270 Brassica napus HOM05D001194 ORTHO05D005909 6.5e-83 311.2 267 59.9
BolC3t21349H Brassica oleracea HOM05D001194 ORTHO05D005909 6.5e-83 311.2 267 59.9
BolC6t35794H Brassica oleracea HOM05D001194 ORTHO05D005909 6.5e-83 311.2 267 59.9
BraA06t23435Z Brassica rapa HOM05D001194 ORTHO05D005909 6.5e-83 311.2 267 59.9
Actinidia32131 Actinidia chinensis HOM05D001194 ORTHO05D005909 8.5e-83 310.8 252 64.7
FAN05G2672 Fragaria x ananassa HOM05D001194 ORTHO05D005909 8.5e-83 310.8 243 66.3
FAN14G3358 Fragaria x ananassa HOM05D001194 ORTHO05D005909 1.5e-82 310.1 243 66.3
BcaC01g01292 Brassica carinata HOM05D001194 ORTHO05D005909 3.2e-82 308.9 268 59.3
Carub.0001s4059 Capsella rubella HOM05D001194 ORTHO05D005909 5.5e-82 308.1 267 58.8
MBI04_g06219_MAGBIO Magnolia biondii HOM05D001194 ORTHO05D005909 3.6e-81 305.4 267 58.1
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 6.7e-80 301.2 267 63.7
ATR0789G185 Amborella trichopoda HOM05D001194 ORTHO05D005909 1.4e-77 293.5 267 56.9
HPP92_023231 Vanilla planifolia HOM05D001194 ORTHO05D005909 2.4e-77 292.7 267 56.2
CDE05G0449 Ceratophyllum demersum HOM05D001194 ORTHO05D005909 1.0e-75 287.3 267 54.7
TPR.G8761 Trifolium pratense HOM05D001194 ORTHO05D005909 1.3e-75 287.0 206 70.4
Os01g0558200 Oryza sativa ssp. japonica HOM05D001194 ORTHO05D005909 1.9e-74 283.1 267 54.3
Rhsim08G0231400 Rhododendron simsii HOM05D001194 ORTHO05D005909 9.4e-74 280.8 321 51.4
Nitab4.5_0000316g0210 Nicotiana tabacum HOM05D001194 ORTHO05D005909 2.7e-73 279.3 266 61.7
Ciclev10025274m.g Citrus clementina HOM05D001194 ORTHO05D005909 4.0e-72 275.4 164 81.1
CiPaw.02G142100 Carya illinoinensis HOM05D001194 ORTHO05D005909 2.0e-71 273.1 164 80.5
MD17G1176900 Malus domestica HOM05D001194 ORTHO05D005909 6.3e-70 268.1 154 83.1
Ca_23295_v3 Cicer arietinum L. HOM05D001194 ORTHO05D005909 1.2e-68 263.8 247 60.3
FvH4_6g32960 Fragaria vesca HOM05D001194 ORTHO05D005909 1.7e-67 260.0 164 75.6
SEGI_14715 Sequoiadendron giganteum HOM05D001194 ORTHO05D005909 1.9e-66 256.5 264 50.8
arahy.Tifrunner.gnm1.ann1.86BA7N Arachis hypogaea HOM05D001194 ORTHO05D005909 4.2e-66 255.4 265 55.1
AagrBONN_evm.TU.Sc2ySwM_362.2881 Anthoceros agrestis HOM05D001194 ORTHO05D005909 2.8e-57 226.1 267 41.6
Mapoly0010s0062 Marchantia polymorpha HOM05D001194 ORTHO05D005909 8.0e-57 224.6 257 44.7
Glyma.09G152800 Glycine max HOM05D001194 ORTHO05D005909 5.8e-55 218.4 206 61.2
SMO347G0060 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 3.9e-51 205.7 271 38.7
Pp3c2_4200 Physcomitrium patens HOM05D001194 ORTHO05D005909 6.6e-51 204.9 263 37.6
Pp3c14_22460 Physcomitrium patens HOM05D001194 ORTHO05D005909 2.1e-49 199.9 263 36.5
SMO119G0344 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 2.8e-49 199.5 266 38.7
SMO163G0008 Selaginella moellendorffii HOM05D001194 ORTHO05D005909 2.8e-49 199.5 266 38.7
Pp3c1_36440 Physcomitrium patens HOM05D001194 ORTHO05D005909 3.0e-43 179.5 160 47.5
arahy.Tifrunner.gnm1.ann1.HDE469 Arachis hypogaea HOM05D001194 ORTHO05D021482 2.8e-41 172.9 180 53.9
Sc12g0009890 Simmondsia chinensis HOM05D001194 ORTHO05D005909 8.1e-41 171.4 165 57.6
CDE05G3462 Ceratophyllum demersum HOM05D001194 ORTHO05D005909 1.9e-37 160.2 93 79.6
THA.LOC104817936 Tarenaya hassleriana HOM05D001194 ORTHO05D005909 3.1e-32 142.9 137 54.0
arahy.Tifrunner.gnm1.ann1.N6M4TT Arachis hypogaea HOM05D001194 ORTHO05D005909 2.9e-30 136.3 111 65.8
arahy.Tifrunner.gnm1.ann1.YRZZ7C Arachis hypogaea HOM05D001194 ORTHO05D005909 1.6e-25 120.6 113 54.9
arahy.Tifrunner.gnm1.ann1.C23CI2 Arachis hypogaea HOM05D001194 ORTHO05D021482 2.8e-25 119.8 74 79.7
arahy.Tifrunner.gnm1.ann1.V93RAK Arachis hypogaea HOM05D001194 ORTHO05D021482 4.8e-25 119.0 69 82.6
arahy.Tifrunner.gnm1.ann1.D8HU13 Arachis hypogaea HOM05D001194 ORTHO05D005909 1.4e-24 117.5 123 50.4
EL10Ac9g21131 Beta vulgaris HOM05D001194 ORTHO05D005909 2.1e-20 103.6 81 66.7
PRCOL_00003219 Prasinoderma coloniale HOM05D001194 ORTHO05D005909 3.1e-16 89.7 324 25.6
Sc12g0009880 Simmondsia chinensis HOM05D001194 ORTHO05D005909 2.2e-14 83.6 47 78.7
Cpa.g.sc131.30 Carica papaya HOM05D001194 ORTHO05D021482 2.3e-11 73.6 55 69.1
MD17G1177000 Malus domestica HOM05D001194 ORTHO05D005909 7.4e-10 68.6 54 66.7
arahy.Tifrunner.gnm1.ann1.FTMH30 Arachis hypogaea HOM05D001891 ORTHO05D005832 1.5e-07 60.8 29 89.7
arahy.Tifrunner.gnm1.ann1.4DL9G8 Arachis hypogaea HOM05D004293 ORTHO05D005044 7.6e-07 58.5 27 92.6
arahy.Tifrunner.gnm1.ann1.H04EJ4 Arachis hypogaea HOM05D001194 ORTHO05D005044 3.8e-06 56.2 35 68.6
arahy.Tifrunner.gnm1.ann1.K82YC3 Arachis hypogaea HOM05D004293 ORTHO05D005044 3.8e-06 56.2 35 68.6


User provided reference genes

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