Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 6.1e-136 487.6 277 100.0
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 2.3e-130 469.2 277 95.7
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 7.2e-129 464.2 277 94.2
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 2.8e-128 462.2 301 89.7
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 4.0e-127 458.4 277 92.1
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.2e-126 456.8 277 92.4
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 4.4e-126 454.9 277 89.9
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 91.7
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 8.3e-125 450.7 277 90.3
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 1.1e-124 450.3 277 91.3
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.4e-124 449.1 277 89.9
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 2.4e-124 449.1 277 89.5
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 4.1e-124 448.4 277 88.4
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 4.1e-124 448.4 277 88.8
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 5.4e-124 448.0 277 89.5
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 5.4e-124 448.0 277 89.5
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 9.2e-124 447.2 277 88.8
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 9.2e-124 447.2 277 89.5
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 89.9
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 89.5
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.0e-123 446.0 277 88.4
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 88.8
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 88.1
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 3.5e-123 445.3 277 89.2
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 89.2
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 88.8
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 87.7
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.3e-122 443.4 277 88.4
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 88.1
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 3.0e-122 442.2 277 88.4
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 88.1
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 88.1
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 88.8
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 8.6e-122 440.7 277 87.7
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 1.5e-121 439.9 277 88.4
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 87.0
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 86.3
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 88.4
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.2e-120 436.8 277 87.7
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.2e-120 436.8 277 87.0
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 2.8e-120 435.6 276 88.4
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 86.6
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 86.6
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 6.2e-120 434.5 277 87.4
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 1.4e-119 433.3 277 85.6
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 1.4e-119 433.3 277 87.4
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 87.0
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.8e-119 433.0 277 86.3
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 3.1e-119 432.2 277 85.9
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 3.1e-119 432.2 277 86.6
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 8.9e-119 430.6 277 86.3
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.2e-118 430.3 276 86.6
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 3.4e-118 428.7 277 87.4
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 3.4e-118 428.7 277 85.6
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.2e-117 426.0 278 86.0
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 2.2e-117 426.0 277 83.8
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 2.9e-117 425.6 277 87.4
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.7e-117 425.2 320 77.5
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 6.4e-117 424.5 277 85.2
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.4e-117 424.5 277 86.3
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 8.3e-117 424.1 321 75.7
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.1e-116 423.7 277 86.6
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 3.2e-116 422.2 274 83.2
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 3.2e-116 422.2 277 81.9
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 9.2e-116 420.6 261 89.3
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.2e-115 420.2 274 82.8
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.2e-115 420.2 277 83.4
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 3.5e-115 418.7 283 82.3
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.0e-114 417.2 277 80.9
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 8.6e-114 414.1 278 81.7
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 2.5e-113 412.5 277 80.1
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 9.5e-113 410.6 277 79.4
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.6e-112 409.8 275 81.8
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.6e-112 409.8 275 81.8
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.6e-112 409.8 275 81.5
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.6e-112 409.8 261 86.2
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.6e-112 409.8 261 86.2
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 2.3e-111 406.0 278 82.0
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.2e-110 403.7 280 80.7
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 2.6e-110 402.5 318 71.7
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 4.4e-110 401.7 277 81.9
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 9.8e-110 400.6 275 81.5
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 3.7e-109 398.7 278 79.9
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 4.9e-109 398.3 277 80.9
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 6.4e-109 397.9 299 73.6
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 4.1e-108 395.2 274 81.4
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.2e-107 393.7 270 82.2
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.2e-107 393.7 255 87.1
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 1.6e-107 393.3 273 80.2
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 4.6e-107 391.7 318 68.6
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.3e-106 390.2 272 81.6
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 1.7e-106 389.8 278 79.9
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 1.5e-105 386.7 277 77.3
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 2.5e-105 386.0 260 83.8
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.3e-105 385.6 278 77.0
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 4.7e-104 381.7 274 72.6
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.1e-103 380.6 258 82.2
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.4e-103 380.2 269 75.1
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 2.3e-103 379.4 256 82.8
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 3.1e-103 379.0 277 78.3
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 4.0e-103 378.6 331 70.7
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 1.5e-102 376.7 271 78.6
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 2.2e-101 372.9 275 78.2
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.7e-101 372.1 345 61.4
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 8.4e-101 370.9 282 75.9
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.3e-98 363.6 230 87.8
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 6.6e-98 361.3 230 85.2
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.1e-95 354.0 222 89.2
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 2.6e-94 349.4 222 87.8
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 1.6e-91 340.1 277 64.6
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 6.0e-91 338.2 250 78.4
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 6.0e-91 338.2 250 78.4
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 5.6e-89 331.6 313 67.4
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 5.6e-89 331.6 267 70.0
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 2.1e-88 329.7 224 83.9
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.4e-87 327.0 275 66.9
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.2e-86 323.9 277 64.6
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.7e-85 320.1 282 65.6
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 3.2e-84 315.8 274 68.2
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.2e-83 313.9 283 65.7
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.5e-83 312.4 274 67.9
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 5.3e-71 271.9 258 60.5
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 1.5e-70 270.4 188 82.4
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 7.1e-68 261.5 284 56.3
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 3.0e-66 256.1 274 54.0
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 2.1e-59 233.4 145 92.4
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 6.7e-58 228.4 155 72.3
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 4.3e-57 225.7 181 76.8
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 3.1e-55 219.5 138 83.3
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 3.4e-54 216.1 129 84.5
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 3.6e-51 206.1 132 81.1
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.0e-45 188.0 299 43.8
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 1.6e-43 180.6 97 95.9
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 1.4e-42 177.6 106 86.8
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 2.8e-40 169.9 90 95.6
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 4.2e-36 156.0 84 92.9
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 4.0e-34 149.4 152 57.2
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 6.5e-29 132.1 80 81.2
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.1e-28 131.3 74 89.2
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.1e-28 131.3 74 89.2
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 3.2e-28 129.8 80 81.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 7.0e-23 112.1 264 36.4
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 4.2e-20 102.8 158 46.8
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 1.4e-18 97.8 149 47.7
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.8e-18 97.4 172 40.1
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 2.6e-17 93.6 102 54.9
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 3.4e-17 93.2 57 78.9
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.5e-17 92.0 71 81.7
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.7e-16 90.9 147 39.5
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 1.7e-16 90.9 157 42.0
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 1.1e-15 88.2 158 39.9
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 1.4e-15 87.8 97 60.8
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.4e-15 87.0 71 74.6
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.0e-15 85.5 159 35.2
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.3e-13 80.5 69 66.7
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 3.3e-12 76.6 46 73.9
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.6e-12 75.9 44 84.1
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.6e-12 75.9 157 40.8
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.6e-11 74.3 163 37.4
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 1.6e-11 74.3 43 83.7
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 5.7e-09 65.9 247 32.8
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.7e-08 63.2 140 42.1
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 5.4e-07 59.3 38 76.3


User provided reference genes

Program Settings