Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 5.3e-224 780.8 418 100.0
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 2.0e-191 672.5 449 83.3
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 2.3e-166 589.3 454 75.1
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 1.4e-163 580.1 457 73.3
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 5.6e-133 478.4 453 61.4
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 6.4e-129 464.9 452 62.4
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.4e-123 447.2 499 55.3
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 2.3e-118 429.9 431 59.9
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 5.1e-118 428.7 436 59.6
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 3.8e-105 386.0 447 54.1
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 5.1e-102 375.6 398 56.0
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 3.7e-100 369.4 443 50.8
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 6.3e-100 368.6 399 56.6
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 9.0e-99 364.8 431 53.1
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 3.4e-98 362.8 335 61.2
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 1.7e-97 360.5 438 50.9
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 2.9e-97 359.8 460 50.2
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.1e-96 357.8 446 51.3
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 7.2e-96 355.1 458 51.5
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 1.2e-95 354.4 452 51.3
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 2.7e-95 353.2 454 49.1
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.0e-94 351.3 428 52.3
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 1.0e-94 351.3 450 49.8
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.3e-94 350.9 449 49.4
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 5.1e-94 349.0 428 52.6
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 8.7e-94 348.2 452 48.9
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.5e-93 347.4 460 48.7
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 7.4e-93 345.1 435 49.4
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.7e-92 344.0 395 54.7
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 4.8e-92 342.4 448 50.7
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 6.3e-92 342.0 385 53.5
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.8e-91 340.5 443 48.3
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 3.1e-91 339.7 321 57.3
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 1.0e-89 334.7 330 55.8
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.3e-89 334.3 458 46.7
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.1e-88 331.3 372 52.2
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 4.2e-88 329.3 444 47.7
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 7.2e-88 328.6 395 53.7
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 2.7e-87 326.6 363 51.8
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 4.6e-87 325.9 452 46.5
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 6.1e-87 325.5 447 47.7
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 6.1e-87 325.5 362 54.4
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 3.9e-86 322.8 411 50.9
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 5.1e-86 322.4 410 51.0
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.7e-84 317.4 337 55.5
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 6.3e-84 315.5 297 58.9
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 6.3e-84 315.5 312 57.1
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.1e-83 314.7 317 56.5
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 2.4e-83 313.5 450 45.6
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 1.3e-81 307.8 433 46.2
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 2.2e-81 307.0 361 49.6
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 5.0e-81 305.8 374 50.0
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 5.0e-81 305.8 451 45.7
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 1.9e-80 303.9 385 47.8
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.2e-80 303.1 444 48.4
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 3.6e-79 299.7 344 52.3
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 3.6e-79 299.7 405 48.4
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 4.7e-79 299.3 390 46.7
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 6.1e-79 298.9 409 47.2
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 3.0e-78 296.6 356 48.9
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 3.0e-78 296.6 364 51.9
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.5e-77 294.3 454 43.6
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 9.7e-77 291.6 386 47.9
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 3.7e-76 289.7 383 47.8
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 1.4e-75 287.7 347 50.7
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.4e-75 287.7 438 44.3
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.4e-75 287.7 438 44.3
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 1.4e-75 287.7 445 43.8
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 1.2e-74 284.6 385 46.0
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.2e-74 284.6 415 43.4
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 2.0e-74 283.9 395 45.8
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 2.6e-74 283.5 366 49.2
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 4.5e-74 282.7 350 49.4
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.3e-73 281.2 386 45.9
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 2.9e-73 280.0 447 43.4
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.5e-72 276.9 382 49.7
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 1.2e-71 274.6 396 43.9
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.8e-70 270.8 337 49.3
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 2.3e-70 270.4 465 41.3
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 5.2e-70 269.2 391 46.3
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 6.7e-70 268.9 415 44.6
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.5e-69 267.7 284 55.6
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 3.3e-69 266.5 349 48.4
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 5.7e-69 265.8 391 45.0
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.7e-68 264.2 435 41.6
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 2.8e-68 263.5 377 45.4
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 4.8e-68 262.7 452 42.9
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.1e-67 261.5 450 40.9
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.4e-67 261.2 341 47.2
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 5.9e-66 255.8 432 40.7
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 7.7e-66 255.4 444 42.6
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 2.9e-65 253.4 451 41.0
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 1.1e-64 251.5 393 45.3
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.2e-63 248.1 401 43.4
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 2.3e-62 243.8 480 38.5
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.4e-61 240.0 471 38.6
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 4.4e-61 239.6 378 42.3
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 1.3e-60 238.0 376 43.6
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.1e-59 235.0 446 38.3
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 2.4e-59 233.8 445 39.6
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 9.1e-59 231.9 393 43.8
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 7.7e-58 228.8 229 56.3
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 5.0e-57 226.1 370 41.6
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 8.6e-57 225.3 260 50.0
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 2.0e-53 214.2 432 36.8
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 2.2e-52 210.7 191 58.6
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 5.4e-51 206.1 204 58.3
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 5.4e-51 206.1 342 41.8
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 5.0e-49 199.5 445 36.4
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 4.7e-47 193.0 229 50.7
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.7e-47 193.0 371 40.2
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 2.3e-46 190.7 441 36.5
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 2.3e-46 190.7 441 36.5
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 5.2e-46 189.5 383 38.1
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 5.8e-45 186.0 462 36.4
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 7.5e-45 185.7 140 67.9
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 6.0e-42 176.0 311 39.9
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 3.9e-41 173.3 170 55.9
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 5.0e-41 172.9 245 47.8
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 2.5e-40 170.6 249 43.4
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.3e-40 169.1 252 46.0
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 2.8e-39 167.2 306 38.9
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.5e-37 159.1 283 37.8
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 3.5e-34 150.2 345 39.1
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 1.2e-31 141.7 422 31.8
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 4.7e-31 139.8 220 48.2
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 2.2e-28 131.0 231 39.0
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 2.9e-28 130.6 146 47.9
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 1.2e-21 108.6 157 45.2
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 1.9e-16 91.3 156 44.2
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 5.6e-16 89.7 156 42.3
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.8e-15 87.4 238 32.4
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 4.2e-11 73.6 86 52.3
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 3.5e-10 70.5 118 39.8
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.0e-09 68.9 217 28.6
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 6.6e-09 66.2 101 42.6
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.3e-08 63.9 200 30.0
arahy.Tifrunner.gnm1.ann1.KUP0VV Arachis hypogaea HOM05D000351 ORTHO05D001519 4.8e-07 60.1 47 61.7
MELO3C032928.2 Cucumis melo HOM05D006039 ORTHO05D006797 8.1e-07 59.3 65 46.2
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 8.1e-07 59.3 100 38.0
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 1.1e-06 58.9 111 34.2


User provided reference genes

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