Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.8e-286 986.9 500 100.0
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-285 985.3 500 99.8
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.2e-284 981.1 500 99.8
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 3.9e-266 921.0 500 93.8
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 9.0e-255 883.2 491 90.4
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 4.2e-252 874.4 495 89.5
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 2.3e-242 842.0 500 84.2
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 5.1e-242 840.9 500 84.2
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.4e-239 832.8 503 83.1
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.9e-236 822.4 500 83.4
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 3.9e-234 814.7 498 81.9
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.1e-233 813.1 488 82.8
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 7.4e-233 810.4 499 81.8
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 6.3e-232 807.4 501 81.8
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.2e-230 803.1 493 81.7
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.2e-230 803.1 495 81.0
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 4.5e-230 801.2 500 81.6
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 6.5e-229 797.3 495 80.8
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.2e-227 793.1 504 79.0
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 3.6e-227 791.6 502 80.1
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.4e-226 789.6 489 81.6
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 5.2e-226 787.7 495 81.4
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 2.6e-225 785.4 492 79.3
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 9.7e-225 783.5 500 79.8
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 8.2e-224 780.4 480 80.4
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.1e-223 780.0 491 80.4
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.1e-223 780.0 497 79.3
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 7.0e-223 777.3 482 80.7
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.2e-221 772.3 495 78.8
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 5.0e-221 771.2 509 76.4
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 6.5e-221 770.8 481 80.5
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 8.5e-221 770.4 498 79.1
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 8.5e-221 770.4 484 80.4
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.5e-220 769.6 499 77.8
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.9e-220 769.2 480 79.4
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 3.2e-220 768.5 503 78.3
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 9.4e-220 766.9 499 77.0
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 3.6e-219 765.0 488 78.3
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.4e-218 763.1 496 78.2
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 1.8e-218 762.7 485 78.6
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 6.8e-218 760.8 487 78.2
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 8.8e-218 760.4 485 78.1
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 8.8e-218 760.4 485 78.1
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 2.0e-217 759.2 484 79.5
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 2.6e-217 758.8 488 77.3
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 3.4e-217 758.4 492 77.4
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 7.5e-217 757.3 485 77.9
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.3e-216 756.5 505 75.2
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.4e-215 752.3 500 77.2
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 2.4e-215 752.3 500 77.2
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 3.1e-215 751.9 488 78.9
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 4.1e-215 751.5 481 78.6
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 1.2e-214 750.0 481 78.2
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 2.7e-214 748.8 490 77.6
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 3.5e-214 748.4 528 73.7
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 5.9e-214 747.7 488 76.0
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.0e-213 746.9 496 75.2
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 2.9e-213 745.3 481 77.5
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 3.8e-213 745.0 488 75.8
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 6.6e-213 744.2 488 75.8
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 2.5e-212 742.3 514 74.5
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 3.3e-212 741.9 492 75.2
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 5.5e-212 741.1 487 75.6
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 6.1e-211 737.6 495 75.6
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.0e-210 736.9 492 76.0
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 5.2e-210 734.6 491 74.7
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 5.2e-210 734.6 491 74.5
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 6.8e-210 734.2 487 75.2
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 8.9e-210 733.8 499 74.5
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.5e-209 733.0 493 74.4
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 2.0e-209 732.6 491 74.3
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 2.0e-209 732.6 491 74.3
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 2.6e-209 732.3 491 74.3
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 3.4e-209 731.9 492 74.8
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 4.4e-209 731.5 491 73.9
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 5.7e-209 731.1 492 75.2
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.3e-208 729.9 482 75.9
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 2.2e-208 729.2 503 73.4
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.2e-208 729.2 493 74.8
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.7e-208 728.4 485 76.1
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 6.3e-208 727.6 492 75.0
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 6.3e-208 727.6 490 74.9
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 6.3e-208 727.6 492 74.4
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 8.3e-208 727.2 491 74.7
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.1e-207 726.9 496 74.2
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.8e-207 726.1 492 74.0
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.4e-207 725.7 490 74.1
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.4e-207 725.7 492 74.4
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.4e-207 725.7 492 74.4
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 3.1e-207 725.3 491 73.7
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.6e-206 723.0 494 73.7
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 3.5e-206 721.8 487 74.5
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.0e-205 720.3 502 72.3
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 1.3e-205 719.9 516 73.3
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.7e-205 719.5 494 73.1
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 8.6e-205 717.2 498 74.5
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 1.1e-204 716.8 489 73.4
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 3.1e-202 708.8 484 72.7
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 7.5e-201 704.1 456 76.8
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.9e-199 699.5 483 73.9
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-199 699.5 349 100.0
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 4.6e-198 694.9 485 73.8
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 6.0e-198 694.5 506 69.8
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 1.3e-197 693.3 482 71.2
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 8.6e-197 690.6 457 75.3
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 9.5e-196 687.2 509 69.7
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 5.8e-193 677.9 471 74.5
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.7e-192 676.4 488 68.2
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 2.9e-192 675.6 573 63.9
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.4e-191 673.3 488 69.1
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 3.2e-191 672.2 492 68.9
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 3.5e-190 668.7 490 69.8
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 5.1e-189 664.8 494 70.0
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 6.6e-189 664.5 498 70.7
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 5.6e-188 661.4 519 67.4
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 3.6e-187 658.7 468 69.4
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.3e-184 650.2 491 67.2
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.7e-184 649.8 483 67.7
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 3.7e-184 648.7 490 64.5
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 1.1e-183 647.1 498 64.1
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-182 643.7 403 85.9
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 3.3e-180 635.6 492 68.1
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.4e-178 630.2 496 66.9
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.8e-178 629.8 488 67.6
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 4.9e-176 621.7 495 63.8
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.4e-175 620.2 403 77.7
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.4e-169 598.6 410 80.5
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.4e-167 592.8 503 64.0
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 3.3e-164 582.4 458 62.9
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.3e-160 570.5 506 58.3
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 6.0e-158 561.6 375 77.6
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.8e-155 552.7 356 79.8
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.7e-155 552.4 281 99.6
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 8.1e-155 551.2 497 57.7
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.8e-153 545.0 272 99.6
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.9e-152 542.0 361 77.0
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 5.1e-149 531.9 553 54.8
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.8e-146 523.5 407 66.8
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 4.5e-145 518.8 389 69.9
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.3e-144 517.3 364 73.6
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.0e-136 491.1 357 71.4
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.3e-128 464.2 309 77.0
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 1.8e-125 453.8 471 51.8
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 5.3e-122 442.2 358 64.5
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 2.6e-121 439.9 276 80.8
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-104 384.4 193 98.4
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.0e-97 360.5 184 100.0
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 4.1e-90 336.3 229 73.8
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 5.2e-85 319.3 252 68.7
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 9.2e-82 308.5 477 38.4
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 2.4e-74 283.9 204 72.5
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 6.0e-65 252.7 200 64.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 9.6e-63 245.4 231 59.7
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.1e-58 231.9 327 45.3
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 3.6e-54 216.9 133 79.7
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 5.3e-53 213.0 127 81.1
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.7e-51 208.0 99 99.0
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.7e-51 208.0 99 99.0
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 2.2e-51 207.6 153 71.2
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 3.8e-51 206.8 137 72.3
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.7e-48 198.0 263 49.0
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 8.7e-48 195.7 139 69.1
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.3e-47 193.4 114 80.7
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.6e-41 174.9 114 74.6
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 5.1e-40 169.9 127 66.9
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 2.1e-33 147.9 207 43.0
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 3.2e-26 124.0 105 62.9
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 5.1e-24 116.7 97 64.9
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 2.5e-23 114.4 67 82.1
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.4e-21 107.8 65 87.7
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 5.3e-21 106.7 72 72.2
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 5.3e-21 106.7 189 40.2
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 1.5e-20 105.1 60 81.7
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 4.5e-20 103.6 69 71.0
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 8.5e-19 99.4 65 75.4
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.2e-18 97.1 74 63.5
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 7.2e-18 96.3 65 72.3
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 7.2e-18 96.3 65 72.3
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.7e-15 86.7 77 61.0
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 7.7e-12 76.3 46 71.7
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 1.1e-10 72.4 38 84.2
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 5.7e-07 60.1 48 75.0


User provided reference genes

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