Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L008343 Phaseolus vulgaris HOM05D005278 ORTHO05D006500 1.0e-222 776.5 440 100.0
VMungo1080G1008 Vigna mungo HOM05D005278 ORTHO05D006500 4.7e-199 698.0 440 88.4
Glyma.15G035200 Glycine max HOM05D005278 ORTHO05D006500 1.3e-183 646.7 440 83.6
Ca_01301_v3 Cicer arietinum L. HOM05D005278 ORTHO05D006500 5.6e-176 621.3 440 81.1
Lalb_Chr24g0397151 Lupinus albus HOM05D005278 ORTHO05D006500 1.1e-168 597.0 440 77.3
Lj3g0005158 Lotus japonicus HOM05D005278 ORTHO05D006500 1.5e-168 596.7 440 77.3
Glyma.13G339200 Glycine max HOM05D005278 ORTHO05D006500 8.2e-167 590.9 440 77.7
Medtr2g097780 Medicago truncatula HOM05D005278 ORTHO05D006500 1.1e-166 590.5 441 77.6
Psat5g287560 Pisum sativum HOM05D005278 ORTHO05D006500 1.8e-161 573.2 458 73.1
arahy.Tifrunner.gnm1.ann1.NY9X43 Arachis hypogaea HOM05D005278 ORTHO05D006500 6.7e-161 571.2 441 75.3
arahy.Tifrunner.gnm1.ann1.4JU9WJ Arachis hypogaea HOM05D005278 ORTHO05D006500 1.9e-160 569.7 438 75.6
TPR.G6835 Trifolium pratense HOM05D005278 ORTHO05D006500 3.8e-148 528.9 415 74.0
QL01p028069 Quercus lobata HOM05D005278 ORTHO05D006500 4.8e-143 511.9 439 67.2
Prupe.6G068200 Prunus persica HOM05D005278 ORTHO05D006500 3.2e-139 499.2 440 64.5
FAN11G2960 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.1e-138 496.5 440 64.5
FAN21G0275 Fragaria x ananassa HOM05D005278 ORTHO05D006500 3.6e-138 495.7 440 64.3
MD11G1092400 Malus domestica HOM05D005278 ORTHO05D006500 3.6e-138 495.7 440 64.3
FvH4_3g37100 Fragaria vesca HOM05D005278 ORTHO05D006500 6.7e-137 491.5 440 63.4
FAN16G0192 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.5e-136 490.3 440 64.3
CiPaw.14G064400 Carya illinoinensis HOM05D005278 ORTHO05D006500 4.4e-136 488.8 441 64.9
RcHm_v2.0_Chr5g0066731 Rosa chinensis HOM05D005278 ORTHO05D006500 8.2e-135 484.6 440 63.2
Manes.02G127600 Manihot esculenta HOM05D005278 ORTHO05D006500 1.4e-134 483.8 450 62.7
Potri.001G245500 Populus trichocarpa HOM05D005278 ORTHO05D006500 4.1e-134 482.3 451 63.2
Cfa011575 Carpinus fangiana HOM05D005278 ORTHO05D006500 7.0e-134 481.5 431 66.1
TAR369G1109 Trochodendron aralioides HOM05D005278 ORTHO05D006500 7.0e-134 481.5 451 62.5
Gohir.A03G045500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 4.5e-133 478.8 439 63.3
Hma1.2p1_0274F.1_g110490 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 5.9e-133 478.4 453 61.4
Sed0022829 Sechium edule HOM05D005278 ORTHO05D006500 7.7e-133 478.0 440 61.8
Gorai.003G128600 Gossypium raimondii HOM05D005278 ORTHO05D006500 1.7e-132 476.9 439 63.3
GSVIVG01024871001 Vitis vinifera HOM05D005278 ORTHO05D006500 1.5e-131 473.8 450 61.3
Dinv17056 Davidia involucrata HOM05D005278 ORTHO05D006500 9.4e-131 471.1 447 62.9
Dinv43000 Davidia involucrata HOM05D005278 ORTHO05D006500 9.4e-131 471.1 447 62.9
CANSAT54G0396 Cannabis sativa HOM05D005278 ORTHO05D006500 2.1e-130 469.9 440 64.8
Carub.0008s1974 Capsella rubella HOM05D005278 ORTHO05D006500 2.1e-130 469.9 442 62.7
THA.LOC104814887 Tarenaya hassleriana HOM05D005278 ORTHO05D006500 4.7e-130 468.8 442 60.4
Sabra16G0148900 Salix brachista HOM05D005278 ORTHO05D006500 3.0e-129 466.1 451 61.4
CSS0023124 Camellia sinensis var. sinensis HOM05D005278 ORTHO05D006500 5.2e-129 465.3 453 61.8
Cpa.g.sc81.65 Carica papaya HOM05D005278 ORTHO05D006500 1.7e-127 460.3 446 62.1
PGR102G1735 Punica granatum HOM05D005278 ORTHO05D006500 1.7e-127 460.3 442 63.1
Ciclev10028430m.g Citrus clementina HOM05D005278 ORTHO05D006500 2.2e-127 459.9 453 61.1
Cc01_g13430 Coffea canephora HOM05D005278 ORTHO05D006500 8.3e-127 458.0 451 59.6
ClCG02G019860 Citrullus lanatus HOM05D005278 ORTHO05D006500 7.0e-126 454.9 440 61.6
AUR62001727 Chenopodium quinoa HOM05D005278 ORTHO05D006500 2.0e-125 453.4 447 58.4
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.7e-125 453.0 447 61.5
Lj1A145T60 Lonicera japonica HOM05D005278 ORTHO05D006500 4.5e-125 452.2 451 61.0
vmacro03023 Vaccinium macrocarpon HOM05D005278 ORTHO05D006500 4.5e-125 452.2 469 58.2
CARHR285340 Cardamine hirsuta HOM05D005278 ORTHO05D006500 7.7e-125 451.4 442 60.0
CAN.G173.8 Capsicum annuum HOM05D005278 ORTHO05D006500 3.8e-124 449.1 452 58.4
Nitab4.5_0000507g0040 Nicotiana tabacum HOM05D005278 ORTHO05D006500 5.0e-124 448.7 451 58.8
Gohir.D03G121500 Gossypium hirsutum HOM05D005278 ORTHO05D006500 9.4e-123 444.5 415 63.1
DCAR_007424 Daucus carota HOM05D005278 ORTHO05D006500 6.1e-122 441.8 458 57.2
Nitab4.5_0006512g0020 Nicotiana tabacum HOM05D005278 ORTHO05D006500 1.0e-121 441.0 449 58.6
HanXRQChr01g0010681 Helianthus annuus HOM05D005278 ORTHO05D006500 1.4e-121 440.7 457 57.5
Dinv43097 Davidia involucrata HOM05D005278 ORTHO05D006500 4.0e-121 439.1 423 62.6
Oeu004184.2 Olea europaea HOM05D005278 ORTHO05D006500 4.0e-121 439.1 451 57.9
AUR62020048 Chenopodium quinoa HOM05D005278 ORTHO05D006500 6.8e-121 438.3 448 57.4
Actinidia08546 Actinidia chinensis HOM05D005278 ORTHO05D006500 1.5e-120 437.2 440 59.3
PSO384G3155 Papaver somniferum HOM05D005278 ORTHO05D006500 1.5e-120 437.2 446 58.5
EL10Ac7g16079 Beta vulgaris HOM05D005278 ORTHO05D006500 2.6e-120 436.4 450 57.1
A10p16320 Brassica napus HOM05D005278 ORTHO05D006500 4.4e-120 435.6 442 60.2
Manes.01G168300 Manihot esculenta HOM05D005278 ORTHO05D006500 5.7e-120 435.3 459 58.2
Aqoxy1G00819 Aquilegia oxysepala HOM05D005278 ORTHO05D006500 7.5e-120 434.9 448 57.4
TWI79G1569 Tripterygium wilfordii HOM05D005278 ORTHO05D006500 9.8e-120 434.5 452 58.4
BraA10t43715Z Brassica rapa HOM05D005278 ORTHO05D006500 1.3e-119 434.1 441 60.1
Lsat_1_v5_gn_5_169740 Lactuca sativa HOM05D005278 ORTHO05D006500 4.8e-119 432.2 455 56.5
PSO339G3476 Papaver somniferum HOM05D005278 ORTHO05D006500 8.3e-119 431.4 446 57.8
Lsat_1_v5_gn_9_24160 Lactuca sativa HOM05D005278 ORTHO05D006500 3.1e-118 429.5 450 57.1
BolC9t57995H Brassica oleracea HOM05D005278 ORTHO05D006500 5.4e-118 428.7 457 58.4
Sopen09g019050 Solanum pennellii HOM05D005278 ORTHO05D006500 5.4e-118 428.7 442 56.8
Hund18883 Selenicereus undatus HOM05D005278 ORTHO05D006500 1.2e-117 427.6 446 55.6
Ah.08g220210 Amaranthus hybridus HOM05D005278 ORTHO05D006500 2.0e-117 426.8 447 55.3
C09p51370 Brassica napus HOM05D005278 ORTHO05D006500 2.7e-117 426.4 442 59.3
ECA248G1020 Erigeron canadensis HOM05D005278 ORTHO05D006500 2.7e-117 426.4 451 56.5
MSTRG.12654 Avicennia marina HOM05D005278 ORTHO05D006500 3.5e-117 426.0 450 57.1
Nn2g13505 Nelumbo nucifera HOM05D005278 ORTHO05D006500 3.5e-117 426.0 448 58.5
Migut.N00899 Erythranthe guttata HOM05D005278 ORTHO05D006500 5.9e-117 425.2 452 57.1
MELO3C025886.2 Cucumis melo HOM05D005278 ORTHO05D006500 1.7e-116 423.7 438 59.1
Thecc.09G313600 Theobroma cacao HOM05D005278 ORTHO05D006500 2.3e-116 423.3 445 57.5
BcaC04g19820 Brassica carinata HOM05D005278 ORTHO05D006500 6.6e-116 421.8 442 58.6
Rhsim13G0076600 Rhododendron simsii HOM05D005278 ORTHO05D006500 6.6e-116 421.8 452 57.1
CsaV3_6G016570 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.9e-115 420.2 429 59.2
CsaV3_7G010040 Cucumis sativus L. HOM05D005278 ORTHO05D006500 1.9e-115 420.2 429 59.2
BcaB08g36287 Brassica carinata HOM05D005278 ORTHO05D006500 9.5e-115 417.9 442 57.9
Peaxi162Scf00676g00221 Petunia axillaris HOM05D005278 ORTHO05D006500 1.2e-114 417.5 446 56.7
FAN17G1485 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.6e-114 417.2 382 62.8
Haze_24189 Corylus avellana HOM05D005278 ORTHO05D006500 1.4e-113 414.1 446 58.5
AL8G35480 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 3.7e-111 406.0 442 56.1
COL.COLO4_18589 Corchorus olitorius HOM05D005278 ORTHO05D006500 1.1e-110 404.4 443 56.4
Eucgr.B02303 Eucalyptus grandis HOM05D005278 ORTHO05D006500 1.1e-110 404.4 448 57.6
Sabra09G0026700 Salix brachista HOM05D005278 ORTHO05D006500 1.3e-108 397.5 480 52.9
MBI05_g02648_MAGBIO Magnolia biondii HOM05D005278 ORTHO05D006500 1.9e-107 393.7 407 55.8
AT5G59210 Arabidopsis thaliana HOM05D005278 ORTHO05D006500 7.3e-107 391.7 442 55.0
Sp6g20780 Schrenkiella parvula HOM05D005278 ORTHO05D006500 2.4e-102 376.7 442 54.5
Thhalv10013620m.g Eutrema salsugineum HOM05D005278 ORTHO05D006500 4.1e-102 375.9 439 55.1
FAN28G2746 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-99 367.9 345 62.6
Os03g0268100 Oryza sativa ssp. japonica HOM05D005278 ORTHO05D006500 3.2e-94 349.7 467 48.2
FvH4_2g37740 Fragaria vesca HOM05D005278 ORTHO05D006500 1.1e-89 334.7 317 61.5
Atru.chr3.4014 Acer truncatum HOM05D005278 ORTHO05D006500 1.8e-89 334.0 394 54.6
Zm00001eb397870 Zea mays HOM05D005278 ORTHO05D006500 3.4e-88 329.7 464 47.8
Aa31LG1G11980 Aethionema arabicum HOM05D005278 ORTHO05D006500 4.4e-88 329.3 380 52.6
ATR0559G139 Amborella trichopoda HOM05D005278 ORTHO05D006500 9.9e-88 328.2 360 53.1
CDE04G2524 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 8.3e-87 325.1 432 48.6
FAN27G2862 Fragaria x ananassa HOM05D005278 ORTHO05D006500 9.6e-83 311.6 393 49.9
Lalb_Chr14g0372041 Lupinus albus HOM05D005278 ORTHO05D006500 1.2e-82 311.2 249 74.7
CDE07G0843 Ceratophyllum demersum HOM05D005278 ORTHO05D006500 1.8e-81 307.4 421 47.5
SEGI_23562 Sequoiadendron giganteum HOM05D005278 ORTHO05D006500 6.8e-81 305.4 460 44.3
unitig_52.g16817 Utricularia gibba HOM05D005278 ORTHO05D006500 1.3e-79 301.2 444 44.6
HPP92_018172 Vanilla planifolia HOM05D001260 ORTHO05D002424 1.2e-77 294.7 421 47.3
RcHm_v2.0_Chr5g0066821 Rosa chinensis HOM05D005278 ORTHO05D006500 3.0e-76 290.0 273 60.1
HPP92_018158 Vanilla planifolia HOM05D005278 ORTHO05D006500 1.4e-73 281.2 368 48.4
SGA_v2.0_scaffold183G39886 Striga asiatica HOM05D005278 ORTHO05D006500 2.7e-69 266.9 460 43.0
Lalb_Chr14g0372031 Lupinus albus HOM05D005278 ORTHO05D006500 5.1e-68 262.7 188 76.1
AL48U10090 Arabidopsis lyrata HOM05D005278 ORTHO05D006500 2.0e-64 250.8 231 63.6
Sc12g0001220 Simmondsia chinensis HOM05D005278 ORTHO05D006500 7.6e-64 248.8 273 53.8
C02p12810 Brassica napus HOM05D005278 ORTHO05D006500 1.4e-62 244.6 337 49.9
BcaC03g14039 Brassica carinata HOM05D005278 ORTHO05D006500 2.8e-58 230.3 371 46.9
BolC2t07376H Brassica oleracea HOM05D005278 ORTHO05D006500 9.0e-57 225.3 274 56.2
Hma1.2p1_0274F.1_g110500 Hydrangea macrophylla HOM05D005278 ORTHO05D006500 4.6e-53 213.0 222 57.7
Mapoly0044s0102 Marchantia polymorpha HOM05D005278 ORTHO05D006500 1.9e-46 191.0 362 37.8
MD03G1084900 Malus domestica HOM05D005278 ORTHO05D006500 4.6e-45 186.4 251 50.2
SMO361G0431 Selaginella moellendorffii HOM05D005278 ORTHO05D006500 1.3e-42 178.3 457 33.3
Pp3c1_10500 Physcomitrium patens HOM05D005278 ORTHO05D006500 1.6e-42 177.9 378 34.4
FAN11G3766 Fragaria x ananassa HOM05D005278 ORTHO05D006500 2.8e-42 177.2 310 42.6
Zm00001eb011990 Zea mays HOM05D005278 ORTHO05D006500 7.7e-40 169.1 278 43.9
FvH4_3g06680 Fragaria vesca HOM05D005278 ORTHO05D006500 1.1e-38 165.2 168 57.1
CBR_g23966 Chara braunii HOM05D005278 ORTHO05D006500 6.1e-37 159.5 464 31.5
FAN11G1104 Fragaria x ananassa HOM05D005278 ORTHO05D006500 8.8e-36 155.6 190 51.1
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 3.1e-33 147.1 144 59.0
Sc12g0001210 Simmondsia chinensis HOM05D005278 ORTHO05D006500 7.7e-32 142.5 127 63.8
RcHm_v2.0_Chr7g0185271 Rosa chinensis HOM05D005278 ORTHO05D006500 2.5e-30 137.5 148 54.7
SHI05905 Sapria himalayana HOM05D005278 ORTHO05D006500 4.4e-27 126.7 175 49.1
FvH4_3g06640 Fragaria vesca HOM05D005278 ORTHO05D006500 4.1e-25 120.2 137 54.7
TPR.G20043 Trifolium pratense HOM05D005278 ORTHO05D006500 3.5e-24 117.1 95 74.7
Manes.04G070850 Manihot esculenta HOM05D005278 ORTHO05D006500 1.7e-23 114.8 147 51.7
FAN25G0674 Fragaria x ananassa HOM05D005278 ORTHO05D006500 1.1e-22 112.1 162 43.8
RcHm_v2.0_Chr5g0066581 Rosa chinensis HOM05D005278 ORTHO05D006500 9.7e-19 99.0 67 80.6
RcHm_v2.0_Chr5g0066831 Rosa chinensis HOM05D005278 ORTHO05D006500 8.2e-18 95.9 92 59.8
C02p36410 Brassica napus HOM05D005278 ORTHO05D006500 1.8e-17 94.7 109 58.7
Rhsim13G0076500 Rhododendron simsii HOM05D005278 ORTHO05D006500 3.2e-14 84.0 86 55.8
BcaB05g22478 Brassica carinata HOM05D005278 ORTHO05D006500 6.1e-13 79.7 191 38.2
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 7.0e-09 66.2 70 61.4
Cre01.g043400 Chlamydomonas reinhardtii HOM05D005278 ORTHO05D006500 7.2e-06 56.2 183 25.1


User provided reference genes

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