Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 1.1e-184 650.2 419 100.0
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 8.2e-100 368.2 445 61.8
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 1.5e-80 304.3 438 53.2
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 1.2e-77 294.7 439 52.6
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 1.3e-57 228.0 446 40.8
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 4.1e-43 179.9 457 37.4
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 2.3e-38 164.1 305 43.3
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 1.2e-37 161.8 443 35.0
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 1.2e-37 161.8 189 51.9
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 7.5e-37 159.1 149 61.1
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 4.9e-36 156.4 266 42.1
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 2.4e-35 154.1 333 38.7
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 7.1e-35 152.5 329 39.5
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 1.6e-34 151.4 436 33.3
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 3.5e-34 150.2 298 40.3
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 4.3e-32 143.3 294 43.9
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 5.6e-32 142.9 290 39.7
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 2.8e-31 140.6 306 38.9
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 3.6e-31 140.2 209 44.0
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 3.6e-31 140.2 152 55.3
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 6.8e-30 136.0 258 38.8
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 8.9e-30 135.6 254 40.9
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 1.2e-29 135.2 255 43.1
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 1.5e-29 134.8 281 39.9
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 8.4e-28 129.0 294 37.4
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 1.4e-27 128.3 418 31.3
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 5.4e-27 126.3 347 36.3
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 7.1e-27 125.9 245 36.7
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 1.2e-26 125.2 282 36.9
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 1.6e-26 124.8 254 40.9
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 1.6e-26 124.8 455 29.7
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 2.1e-26 124.4 275 38.2
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 1.7e-25 121.3 286 36.7
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 1.7e-25 121.3 285 37.5
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 3.0e-25 120.6 285 35.8
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 3.9e-25 120.2 338 35.2
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.9e-24 117.9 162 46.3
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 2.5e-24 117.5 230 41.7
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 1.6e-23 114.8 122 52.5
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 2.1e-23 114.4 281 37.0
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 2.8e-23 114.0 409 29.3
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 2.8e-23 114.0 305 34.8
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 4.7e-23 113.2 274 35.4
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 6.2e-23 112.8 295 36.6
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 1.4e-22 111.7 302 34.8
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 4.0e-22 110.2 262 37.0
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 4.0e-22 110.2 198 43.4
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 4.0e-22 110.2 206 43.7
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 6.9e-22 109.4 236 35.6
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 6.9e-22 109.4 287 34.5
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 9.0e-22 109.0 277 34.7
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 1.5e-21 108.2 463 30.0
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 1.5e-21 108.2 189 41.3
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 2.6e-21 107.5 101 58.4
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 5.8e-21 106.3 292 32.5
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 7.6e-21 105.9 198 40.4
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 9.9e-21 105.5 278 34.9
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.3e-20 105.1 290 33.8
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 3.8e-20 103.6 333 32.7
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 1.4e-19 101.7 246 35.4
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 5.4e-19 99.8 252 36.1
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 5.4e-19 99.8 433 28.4
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 5.4e-19 99.8 235 39.6
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 1.6e-18 98.2 172 37.2
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 4.6e-18 96.7 378 28.8
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 3.9e-17 93.6 88 64.8
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 6.6e-17 92.8 268 33.6
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 1.1e-16 92.0 188 35.6
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 1.1e-16 92.0 217 36.4
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 2.8e-15 87.4 143 39.2
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 4.8e-15 86.7 191 37.2
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 6.2e-15 86.3 125 44.8
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 6.2e-15 86.3 314 31.8
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 8.1e-15 85.9 103 48.5
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 8.1e-15 85.9 103 48.5
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 1.4e-14 85.1 193 34.2
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 4.0e-14 83.6 297 30.6
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 4.0e-14 83.6 297 30.6
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 4.0e-14 83.6 297 30.6
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 1.5e-13 81.6 286 30.4
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 2.6e-13 80.9 287 30.7
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 3.4e-13 80.5 231 32.9
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 4.5e-13 80.1 220 31.8
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 5.8e-13 79.7 296 30.1
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 9.9e-13 79.0 286 30.1
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 1.3e-12 78.6 355 28.7
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.7e-12 78.2 272 32.0
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 2.2e-12 77.8 292 30.5
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 2.9e-12 77.4 330 28.2
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 8.4e-12 75.9 352 28.4
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 8.4e-12 75.9 286 29.4
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 8.4e-12 75.9 350 28.6
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 3.2e-11 73.9 122 41.8
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 1.6e-10 71.6 260 28.5
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 2.1e-10 71.2 301 29.2
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.1e-10 71.2 216 36.1
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 2.7e-10 70.9 300 27.7
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 2.7e-10 70.9 242 27.3
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 2.7e-10 70.9 250 30.0
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 6.0e-10 69.7 336 28.0
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 2.3e-09 67.8 310 28.7
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 3.0e-09 67.4 235 34.0
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 6.7e-09 66.2 299 27.8
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 6.7e-09 66.2 176 35.8
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 1.1e-08 65.5 392 25.0
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.5e-08 65.1 258 32.2
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 3.3e-08 63.9 109 39.4
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 4.3e-08 63.5 118 37.3
CDE07G0208 Ceratophyllum demersum HOM05D006297 ORTHO05D007873 7.4e-08 62.8 240 28.8
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 1.3e-07 62.0 332 26.8
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 4.8e-07 60.1 275 28.7
QL10p066115 Quercus lobata HOM05D006297 ORTHO05D017888 8.1e-07 59.3 71 43.7
QL10p061553 Quercus lobata HOM05D006297 ORTHO05D007873 3.1e-06 57.4 107 36.4


User provided reference genes

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