Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 3.1e-125 451.8 230 100.0
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 6.7e-120 434.1 231 96.1
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 2.4e-109 399.1 236 87.7
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 1.7e-107 392.9 237 88.2
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 1.0e-88 330.5 264 71.2
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 6.7e-88 327.8 246 74.4
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 1.1e-87 327.0 244 74.6
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 9.7e-87 323.9 254 70.9
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 8.2e-86 320.9 247 71.7
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 1.1e-82 310.5 254 68.9
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.9e-82 309.7 204 76.5
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 2.5e-82 309.3 245 70.6
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 4.0e-80 302.0 222 70.7
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 6.7e-80 301.2 220 72.3
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 1.5e-79 300.1 200 73.0
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 3.3e-79 298.9 194 75.3
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 5.7e-79 298.1 217 69.1
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 1.3e-78 297.0 212 70.3
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 3.7e-78 295.4 197 71.6
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 6.3e-78 294.7 188 77.7
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 6.3e-78 294.7 188 77.7
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 8.2e-78 294.3 209 70.8
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 8.2e-78 294.3 209 70.8
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 8.2e-78 294.3 202 71.8
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 8.2e-78 294.3 202 73.3
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 1.4e-77 293.5 188 77.1
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.8e-77 293.1 191 77.0
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 4.1e-77 292.0 188 76.6
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 5.3e-77 291.6 188 74.5
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 9.1e-77 290.8 188 74.5
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.2e-76 290.4 188 73.9
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.6e-76 290.0 206 70.4
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 2.0e-76 289.7 207 71.5
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.0e-76 289.7 206 69.4
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 2.7e-76 289.3 188 73.9
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 3.5e-76 288.9 188 73.4
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 4.5e-76 288.5 188 75.5
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 4.5e-76 288.5 194 72.7
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 4.5e-76 288.5 188 74.5
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 5.9e-76 288.1 192 73.4
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 1.0e-75 287.3 188 75.0
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 1.0e-75 287.3 188 75.0
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.0e-75 287.3 191 73.3
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 1.3e-75 287.0 189 73.0
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 1.3e-75 287.0 189 73.0
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.7e-75 286.6 188 73.9
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 1.7e-75 286.6 206 69.4
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 2.2e-75 286.2 194 72.7
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 8.5e-75 284.3 188 72.3
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 8.5e-75 284.3 188 71.8
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 1.1e-74 283.9 187 73.3
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.5e-74 283.5 188 72.9
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.5e-74 283.5 188 72.3
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 1.5e-74 283.5 188 74.5
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.5e-74 283.5 188 73.4
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 1.5e-74 283.5 188 71.3
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.9e-74 283.1 202 70.3
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 2.5e-74 282.7 188 74.5
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 3.2e-74 282.3 188 72.9
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 4.2e-74 282.0 188 72.9
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 5.5e-74 281.6 188 74.5
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 5.5e-74 281.6 186 73.7
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 7.2e-74 281.2 187 71.7
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 7.2e-74 281.2 202 70.3
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 7.2e-74 281.2 216 66.7
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.2e-73 280.4 188 70.7
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 1.6e-73 280.0 187 72.7
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 2.1e-73 279.6 187 72.2
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 2.1e-73 279.6 216 65.3
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 2.7e-73 279.3 180 72.2
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 2.7e-73 279.3 206 67.5
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 3.6e-73 278.9 202 68.3
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 3.6e-73 278.9 202 68.3
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 4.7e-73 278.5 188 69.7
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 1.4e-72 276.9 213 65.7
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 4.0e-72 275.4 188 73.4
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 4.0e-72 275.4 216 64.8
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 3.4e-71 272.3 195 71.3
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 3.4e-71 272.3 196 68.9
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 9.8e-71 270.8 185 72.4
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.3e-70 270.4 187 70.1
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.3e-70 270.4 187 70.1
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 1.7e-70 270.0 190 70.5
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 2.2e-70 269.6 187 69.5
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 3.7e-70 268.9 208 64.9
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 3.7e-70 268.9 188 68.1
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 8.3e-70 267.7 196 67.3
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.4e-69 266.9 190 72.1
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 1.4e-69 266.9 189 71.4
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 1.4e-69 266.9 188 67.6
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.8e-69 266.5 189 68.8
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 1.8e-69 266.5 188 70.7
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 4.1e-69 265.4 190 72.1
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 1.6e-68 263.5 223 61.9
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 1.6e-68 263.5 255 56.5
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 2.0e-68 263.1 225 61.3
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 2.7e-68 262.7 196 70.4
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 1.7e-67 260.0 202 63.9
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.2e-66 255.4 190 66.3
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 7.2e-66 254.6 190 66.8
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 7.2e-66 254.6 190 66.3
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 7.2e-66 254.6 190 66.3
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.2e-66 254.6 190 66.3
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 7.2e-66 254.6 201 61.7
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 2.1e-65 253.1 206 66.0
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 6.1e-65 251.5 168 70.2
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 8.0e-65 251.1 165 76.4
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 2.3e-64 249.6 195 66.7
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 4.9e-62 241.9 214 58.9
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 4.3e-58 228.8 160 66.2
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 1.2e-57 227.3 187 63.1
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 3.4e-55 219.2 220 53.2
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 4.4e-55 218.8 152 74.3
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 6.4e-54 214.9 155 71.6
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 6.4e-54 214.9 221 54.8
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.9e-53 213.4 133 73.7
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 1.6e-52 210.3 173 59.0
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.3e-51 207.2 135 76.3
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 5.6e-50 201.8 163 62.0
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 2.1e-49 199.9 155 68.4
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 4.7e-49 198.7 139 69.8
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 4.7e-49 198.7 161 63.4
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.7e-43 180.3 108 75.0
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 9.5e-42 174.5 117 69.2
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 2.7e-36 156.4 92 78.3
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 8.9e-32 141.4 104 63.5
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 2.0e-31 140.2 187 44.4
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 1.3e-30 137.5 101 73.3
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 4.2e-29 132.5 133 48.1
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 5.1e-27 125.6 152 41.4
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 5.1e-27 125.6 182 45.6
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 9.6e-26 121.3 140 43.6
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 1.2e-23 114.4 96 59.4
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.8e-22 109.4 94 62.8
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.8e-22 109.4 94 62.8
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 7.1e-21 105.1 80 70.0
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 1.7e-19 100.5 99 57.6
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 9.0e-16 88.2 96 54.2
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.2e-13 79.7 132 44.7
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 9.3e-13 78.2 41 85.4
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 1.1e-10 71.2 52 67.3
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 1.4e-08 64.3 56 64.3
FvH4_1g24250 Fragaria vesca HOM05D017060 ORTHO05D046490 6.4e-06 55.5 109 40.4


User provided reference genes

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