Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 3.1e-99 365.2 189 100.0
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 6.8e-86 320.9 189 88.9
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 1.6e-82 309.7 189 82.5
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 2.8e-76 288.9 189 78.8
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 3.3e-64 248.8 189 67.7
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 1.3e-60 236.9 190 66.3
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 2.4e-59 232.6 186 65.6
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 2.1e-58 229.6 186 64.5
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 2.3e-57 226.1 190 65.8
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 8.6e-57 224.2 190 65.3
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 3.1e-54 215.7 191 65.4
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 4.4e-53 211.8 188 59.6
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 2.3e-49 199.5 188 58.5
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 1.5e-48 196.8 188 57.4
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 1.9e-48 196.4 183 58.5
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 3.3e-48 195.7 190 58.4
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.2e-47 193.7 190 58.9
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 1.6e-47 193.4 181 55.8
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 1.6e-47 193.4 181 55.8
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 1.6e-47 193.4 181 55.8
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 4.7e-47 191.8 181 58.6
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 1.1e-46 190.7 188 58.0
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 1.4e-46 190.3 182 57.1
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 1.5e-45 186.8 188 54.3
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 3.4e-45 185.7 189 56.6
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 3.4e-45 185.7 183 59.0
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 4.4e-45 185.3 188 54.3
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 7.6e-45 184.5 189 55.6
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 1.3e-44 183.7 183 56.8
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 1.7e-44 183.3 182 56.0
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 4.9e-44 181.8 184 58.7
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 8.4e-44 181.0 188 50.5
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.1e-43 180.6 181 55.8
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 1.1e-43 180.6 183 55.7
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.9e-43 179.9 194 55.7
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 1.9e-43 179.9 188 53.7
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.2e-43 179.1 207 53.1
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 5.4e-43 178.3 181 54.1
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 5.4e-43 178.3 188 53.2
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 7.1e-43 177.9 189 55.0
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 2.7e-42 176.0 189 55.0
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 4.6e-42 175.3 186 52.7
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 1.0e-41 174.1 182 57.1
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.3e-41 173.7 181 53.0
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 1.3e-41 173.7 187 52.4
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 3.9e-41 172.2 186 52.7
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 5.1e-41 171.8 182 54.4
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 8.7e-41 171.0 188 53.2
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 1.5e-40 170.2 190 50.5
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 3.3e-40 169.1 189 54.0
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 7.3e-40 167.9 182 53.8
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 2.1e-39 166.4 186 52.2
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 2.8e-39 166.0 185 54.1
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 4.7e-39 165.2 183 53.0
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 4.7e-39 165.2 187 54.0
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 5.3e-38 161.8 181 49.2
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 6.9e-38 161.4 191 50.8
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 9.0e-38 161.0 189 49.7
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 1.5e-37 160.2 183 53.0
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 4.4e-37 158.7 189 49.2
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 2.4e-35 152.9 184 48.9
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 2.4e-35 152.9 182 48.4
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 1.0e-33 147.5 189 46.6
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 1.3e-33 147.1 189 46.6
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 8.7e-33 144.4 182 46.7
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 8.7e-33 144.4 188 49.5
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 4.3e-32 142.1 181 48.1
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 5.6e-32 141.7 188 48.9
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 5.6e-32 141.7 190 47.4
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 7.3e-32 141.4 182 50.5
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 7.3e-32 141.4 133 55.6
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 9.6e-32 141.0 182 50.5
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 9.6e-32 141.0 187 48.1
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 9.6e-32 141.0 182 48.9
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 1.3e-31 140.6 182 51.1
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.3e-31 140.6 187 47.6
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.6e-31 140.2 189 46.0
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 2.1e-31 139.8 190 48.9
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 3.6e-31 139.0 190 46.3
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 6.2e-31 138.3 185 45.9
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 8.1e-31 137.9 176 52.3
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 1.1e-30 137.5 189 46.6
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 1.8e-30 136.7 184 51.1
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 1.8e-30 136.7 176 52.3
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 4.0e-30 135.6 184 48.4
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 4.0e-30 135.6 191 46.6
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 2.0e-29 133.3 176 51.1
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 2.6e-29 132.9 183 49.2
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 2.6e-29 132.9 184 46.7
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 2.6e-29 132.9 183 45.9
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 3.4e-29 132.5 202 43.6
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 7.6e-29 131.3 183 47.0
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 3.8e-28 129.0 184 48.4
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 1.4e-27 127.1 196 44.4
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 1.4e-27 127.1 184 48.4
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 1.9e-27 126.7 183 44.8
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 9.3e-27 124.4 193 42.5
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 2.1e-26 123.2 103 65.0
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 7.9e-26 121.3 183 47.5
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 3.9e-25 119.0 195 43.6
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 3.9e-25 119.0 194 43.3
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 6.7e-25 118.2 170 44.7
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 6.7e-25 118.2 103 62.1
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 1.5e-24 117.1 222 39.2
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 1.9e-24 116.7 184 42.9
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 5.6e-24 115.2 196 38.3
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 2.8e-23 112.8 178 40.4
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 2.0e-21 106.7 183 43.7
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 2.6e-21 106.3 182 43.4
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 5.8e-21 105.1 172 43.6
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 7.6e-21 104.8 183 44.3
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 7.6e-21 104.8 183 44.3
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 7.6e-21 104.8 183 44.3
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 7.6e-21 104.8 156 45.5
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 9.9e-21 104.4 183 44.3
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 1.7e-20 103.6 172 43.6
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 1.1e-19 100.9 151 45.0
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 3.2e-19 99.4 136 45.6
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 4.2e-19 99.0 188 36.7
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 7.1e-19 98.2 152 42.1
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 2.1e-18 96.7 76 65.8
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 4.6e-18 95.5 173 36.4
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 2.5e-16 89.7 82 62.2
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 5.6e-16 88.6 185 38.4
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 1.3e-15 87.4 185 37.8
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 3.1e-14 82.8 138 39.9
arahy.Tifrunner.gnm1.ann1.MN3VL9 Arachis hypogaea HOM05D004998 ORTHO05D006104 4.0e-14 82.4 78 56.4
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 5.3e-14 82.0 134 40.3
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.9e-14 81.6 74 59.5
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 9.0e-14 81.3 173 38.2
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 7.6e-13 78.2 170 40.0
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.3e-12 77.4 185 36.2
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 3.8e-12 75.9 141 41.1
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 4.9e-12 75.5 181 37.0
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 2.5e-11 73.2 195 32.3
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 4.2e-11 72.4 182 35.2
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 2.1e-10 70.1 150 36.0
Medtr4g064210 Medicago truncatula HOM05D004998 ORTHO05D006104 3.5e-10 69.3 56 62.5
BolC1t04941H Brassica oleracea HOM05D004998 ORTHO05D006104 4.6e-10 68.9 225 32.4
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.3e-09 67.4 64 51.6
Oeu002429.1 Olea europaea HOM05D004998 ORTHO05D006104 1.8e-09 67.0 59 59.3
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 3.0e-09 66.2 218 31.7
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 1.5e-08 63.9 111 43.2
SHI05935 Sapria himalayana HOM05D004998 ORTHO05D006104 1.9e-08 63.5 152 34.2
unitig_37.g12674 Utricularia gibba HOM05D004998 ORTHO05D006104 5.7e-08 62.0 141 36.2
arahy.Tifrunner.gnm1.ann1.JH7EIG Arachis hypogaea HOM05D000103 ORTHO05D000049 5.3e-06 55.5 82 46.3


User provided reference genes

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