Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L006243 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.5e-158 562.8 280 100.0
VMungo1080G1107 Vigna mungo HOM05D000758 ORTHO05D002867 3.3e-137 491.9 283 88.3
Glyma.13G336800 Glycine max HOM05D005444 ORTHO05D006773 2.4e-124 449.1 281 81.9
Glyma.15G037500 Glycine max HOM05D005444 ORTHO05D006773 1.2e-123 446.8 255 87.1
Ca_01319_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.9e-108 396.4 262 78.6
Medtr2g097230 Medicago truncatula HOM05D005444 ORTHO05D006773 9.3e-108 394.0 264 75.4
TPR.G34263 Trifolium pratense HOM05D005444 ORTHO05D006773 1.8e-106 389.8 266 74.1
arahy.Tifrunner.gnm1.ann1.XH3YCC Arachis hypogaea HOM05D005444 ORTHO05D006773 3.8e-101 372.1 296 65.2
arahy.Tifrunner.gnm1.ann1.3F7RX4 Arachis hypogaea HOM05D005444 ORTHO05D006773 7.1e-100 367.9 296 64.5
Glyma.12G062600 Glycine max HOM05D005444 ORTHO05D006773 3.0e-98 362.5 272 69.5
Phvul.011G063700 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.9e-97 359.8 263 70.3
Potri.001G241400 Populus trichocarpa HOM05D005444 ORTHO05D006773 9.7e-97 357.5 276 65.2
Haze_24114 Corylus avellana HOM05D005444 ORTHO05D006773 3.1e-95 352.4 290 65.5
Lj3g0017515 Lotus japonicus HOM05D005444 ORTHO05D006773 4.1e-95 352.1 283 63.6
VMungo1127G0766 Vigna mungo HOM05D005444 ORTHO05D006773 1.5e-94 350.1 272 67.6
Cfa011517 Carpinus fangiana HOM05D005444 ORTHO05D006773 3.4e-94 349.0 290 64.8
Dinv04178 Davidia involucrata HOM05D005444 ORTHO05D006773 4.5e-94 348.6 292 61.0
CANSAT54G1668 Cannabis sativa HOM05D005444 ORTHO05D006773 5.9e-94 348.2 267 64.4
Atru.chr3.3946 Acer truncatum HOM05D005444 ORTHO05D006773 1.3e-93 347.1 256 66.8
MD03G1090200 Malus domestica HOM05D005444 ORTHO05D006773 1.7e-93 346.7 236 71.6
QL01p031522 Quercus lobata HOM05D005444 ORTHO05D006773 2.2e-93 346.3 265 66.8
Lalb_Chr01g0003631 Lupinus albus HOM05D005444 ORTHO05D006773 3.8e-93 345.5 278 64.7
Actinidia34411 Actinidia chinensis HOM05D005444 ORTHO05D006773 6.5e-93 344.7 290 61.0
Gorai.001G111300 Gossypium raimondii HOM05D005444 ORTHO05D006773 1.1e-92 344.0 236 69.1
Manes.02G131500 Manihot esculenta HOM05D005444 ORTHO05D006773 1.1e-92 344.0 235 71.1
Ciclev10028946m.g Citrus clementina HOM05D005444 ORTHO05D006773 1.9e-92 343.2 295 62.0
Sabra09G0022900 Salix brachista HOM05D005444 ORTHO05D006773 2.5e-92 342.8 237 69.6
Gohir.D07G103400 Gossypium hirsutum HOM05D005444 ORTHO05D006773 4.2e-92 342.0 236 68.6
FAN21G3395 Fragaria x ananassa HOM05D005444 ORTHO05D006773 7.2e-92 341.3 288 63.2
CSS0026048 Camellia sinensis var. sinensis HOM05D005444 ORTHO05D006773 1.2e-91 340.5 276 62.3
FvH4_3g36480 Fragaria vesca HOM05D005444 ORTHO05D006773 1.2e-91 340.5 288 62.8
GSVIVG01024939001 Vitis vinifera HOM05D005444 ORTHO05D006773 2.7e-91 339.3 277 64.3
Gohir.A07G098900 Gossypium hirsutum HOM05D005444 ORTHO05D006773 3.6e-91 339.0 236 68.2
Potri.009G032300 Populus trichocarpa HOM05D005444 ORTHO05D006773 6.1e-91 338.2 239 68.6
Sc21g0005860 Simmondsia chinensis HOM05D005444 ORTHO05D006773 6.1e-91 338.2 276 62.0
RcHm_v2.0_Chr5g0065341 Rosa chinensis HOM05D005444 ORTHO05D006773 3.0e-90 335.9 270 63.0
Sed0025445 Sechium edule HOM05D005444 ORTHO05D006773 1.5e-89 333.6 241 65.6
Eucgr.B02353 Eucalyptus grandis HOM05D005444 ORTHO05D006773 2.5e-89 332.8 237 67.9
Nitab4.5_0000463g0210 Nicotiana tabacum HOM05D005444 ORTHO05D006773 9.7e-89 330.9 287 59.2
COL.COLO4_18527 Corchorus olitorius HOM05D005444 ORTHO05D006773 4.8e-88 328.6 236 66.5
CsaV3_1G034350 Cucumis sativus L. HOM05D005444 ORTHO05D006773 4.8e-88 328.6 313 55.6
Sabra16G0145900 Salix brachista HOM05D005444 ORTHO05D006773 8.2e-88 327.8 255 63.5
HanXRQChr05g0135061 Helianthus annuus HOM05D005444 ORTHO05D006773 1.1e-87 327.4 236 64.4
Peaxi162Scf00774g00121 Petunia axillaris HOM05D005444 ORTHO05D006773 2.4e-87 326.2 287 57.5
MD11G1099800 Malus domestica HOM05D005444 ORTHO05D006773 3.1e-87 325.9 295 59.3
ECA236G0569 Erigeron canadensis HOM05D005444 ORTHO05D006773 5.3e-87 325.1 237 64.1
FAN16G3284 Fragaria x ananassa HOM05D005444 ORTHO05D006773 9.1e-87 324.3 325 55.7
arahy.Tifrunner.gnm1.ann1.9NI65Y Arachis hypogaea HOM05D005444 ORTHO05D006773 3.4e-86 322.4 240 69.2
arahy.Tifrunner.gnm1.ann1.T6ZDSA Arachis hypogaea HOM05D005444 ORTHO05D006773 3.4e-86 322.4 240 69.6
Rhsim01G0229400 Rhododendron simsii HOM05D005444 ORTHO05D006773 4.5e-86 322.0 286 59.8
Psat5g286680 Pisum sativum HOM05D005444 ORTHO05D006773 7.7e-86 321.2 264 65.2
Lsat_1_v5_gn_8_73500 Lactuca sativa HOM05D005444 ORTHO05D006773 1.3e-85 320.5 236 63.6
CAN.G394.63 Capsicum annuum HOM05D005444 ORTHO05D006773 2.2e-85 319.7 287 56.1
THA.LOC104810774 Tarenaya hassleriana HOM05D005444 ORTHO05D006773 2.9e-85 319.3 266 59.8
FAN11G0832 Fragaria x ananassa HOM05D005444 ORTHO05D006773 5.0e-85 318.5 288 58.7
TWI79G0937 Tripterygium wilfordii HOM05D005444 ORTHO05D006773 2.5e-84 316.2 234 67.1
AUR62009560 Chenopodium quinoa HOM05D005444 ORTHO05D006773 3.2e-84 315.8 237 64.1
Nitab4.5_0001326g0170 Nicotiana tabacum HOM05D005444 ORTHO05D006773 4.2e-84 315.5 312 54.5
Aa31sc23G420 Aethionema arabicum HOM05D005444 ORTHO05D006773 9.4e-84 314.3 238 64.3
Sopen06g032680 Solanum pennellii HOM05D005444 ORTHO05D006773 1.2e-83 313.9 287 55.7
Solyc06g076250.4 Solanum lycopersicum HOM05D005444 ORTHO05D006773 1.6e-83 313.5 287 55.7
PGSC0003DMG401030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 2.7e-83 312.8 239 61.5
ClCG03G001420 Citrullus lanatus HOM05D005444 ORTHO05D006773 1.4e-82 310.5 349 50.1
Carub.0008s2007 Capsella rubella HOM05D005444 ORTHO05D006773 3.0e-82 309.3 262 59.5
AT5G59400 Arabidopsis thaliana HOM05D005444 ORTHO05D006773 3.9e-82 308.9 238 63.9
Cc01_g13010 Coffea canephora HOM05D005444 ORTHO05D006773 6.7e-82 308.1 291 54.0
HanXRQChr06g0178811 Helianthus annuus HOM05D005444 ORTHO05D006773 1.1e-81 307.4 236 61.0
AL8G35870 Arabidopsis lyrata HOM05D005444 ORTHO05D006773 1.5e-81 307.0 237 62.4
Sp6g21080 Schrenkiella parvula HOM05D005444 ORTHO05D006773 2.0e-81 306.6 270 59.6
BraA10t43744Z Brassica rapa HOM05D005444 ORTHO05D006773 2.6e-81 306.2 236 62.7
Hund04946 Selenicereus undatus HOM05D005444 ORTHO05D006773 5.7e-81 305.1 294 54.8
BcaB08g36261 Brassica carinata HOM05D005444 ORTHO05D006773 7.4e-81 304.7 285 57.2
BcaC04g19778 Brassica carinata HOM05D005444 ORTHO05D006773 7.4e-81 304.7 236 62.3
A10p16600 Brassica napus HOM05D005444 ORTHO05D006773 7.4e-81 304.7 236 62.3
C09p51810 Brassica napus HOM05D005444 ORTHO05D006773 7.4e-81 304.7 236 62.3
BolC9t58042H Brassica oleracea HOM05D005444 ORTHO05D006773 7.4e-81 304.7 236 62.3
SalBow3G1488 Salvia bowleyana HOM05D005444 ORTHO05D006773 1.3e-80 303.9 323 52.6
Migut.D02083 Erythranthe guttata HOM05D005444 ORTHO05D006773 1.7e-80 303.5 237 64.1
PSO063G3487 Papaver somniferum HOM05D005444 ORTHO05D006773 1.1e-79 300.8 235 63.4
vmacro14541 Vaccinium macrocarpon HOM05D005444 ORTHO05D006773 1.4e-79 300.4 267 58.8
PSO339G5422 Papaver somniferum HOM05D005444 ORTHO05D006773 7.0e-79 298.1 235 63.0
EL10Ac7g16033 Beta vulgaris HOM05D005444 ORTHO05D006773 1.2e-78 297.4 229 63.8
Cpa.g.sc81.131 Carica papaya HOM05D005444 ORTHO05D006773 2.0e-78 296.6 244 63.1
Actinidia23933 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.0e-77 294.3 306 53.9
Lj1A150T42 Lonicera japonica HOM05D005444 ORTHO05D006773 1.9e-76 290.0 262 58.0
MELO3C020623.2 Cucumis melo HOM05D005444 ORTHO05D006773 4.7e-75 285.4 307 53.4
FAN25G3546 Fragaria x ananassa HOM05D005444 ORTHO05D006773 3.9e-74 282.3 230 62.2
TAR633G2200 Trochodendron aralioides HOM05D005444 ORTHO05D006773 5.7e-73 278.5 217 63.1
ATR0559G091 Amborella trichopoda HOM05D005444 ORTHO05D006773 7.4e-73 278.1 266 51.5
PGR102G1676 Punica granatum HOM05D005444 ORTHO05D006773 4.8e-72 275.4 239 61.5
Ca_19148_v3 Cicer arietinum L. HOM05D005444 ORTHO05D006773 1.1e-71 274.2 182 75.3
Oeu017397.1 Olea europaea HOM05D005444 ORTHO05D006773 1.8e-71 273.5 266 53.4
CDE09G1090 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 4.1e-71 272.3 236 57.6
Thecc.09G320000 Theobroma cacao HOM05D005444 ORTHO05D006773 1.1e-68 264.2 288 51.7
CiPaw.13G092700 Carya illinoinensis HOM05D005444 ORTHO05D006773 1.9e-68 263.5 229 60.3
Duzib168G1171 Durio zibethinus HOM05D005444 ORTHO05D006773 2.5e-68 263.1 280 52.1
Prupe.6G074400 Prunus persica HOM05D005444 ORTHO05D006773 2.5e-68 263.1 228 61.4
Dinv17019 Davidia involucrata HOM05D005444 ORTHO05D006773 7.2e-68 261.5 271 52.4
Dinv42967 Davidia involucrata HOM05D005444 ORTHO05D006773 7.2e-68 261.5 271 52.4
Dinv43132 Davidia involucrata HOM05D005444 ORTHO05D006773 7.2e-68 261.5 271 52.4
SEGI_38540 Sequoiadendron giganteum HOM05D005444 ORTHO05D006773 7.2e-68 261.5 231 56.7
CDE04G2637 Ceratophyllum demersum HOM05D005444 ORTHO05D006773 2.7e-67 259.6 237 53.2
AUR62001772 Chenopodium quinoa HOM05D005444 ORTHO05D006773 6.8e-66 255.0 261 52.5
Mapoly0050s0097 Marchantia polymorpha HOM05D005444 ORTHO05D006773 3.5e-62 242.7 240 48.8
TPR.G1035 Trifolium pratense HOM05D005444 ORTHO05D006773 7.7e-62 241.5 196 66.3
Thhalv10014435m.g Eutrema salsugineum HOM05D005444 ORTHO05D006773 6.8e-58 228.4 217 57.1
HPP92_009462 Vanilla planifolia HOM05D005444 ORTHO05D006773 6.8e-58 228.4 215 54.0
AagrBONN_evm.TU.Sc2ySwM_368.577 Anthoceros agrestis HOM05D005444 ORTHO05D006773 1.5e-57 227.3 232 50.4
Oeu002422.1 Olea europaea HOM05D005444 ORTHO05D006773 2.0e-57 226.9 420 35.7
Hund18899 Selenicereus undatus HOM05D005444 ORTHO05D006773 2.8e-56 223.0 188 58.5
Pp3c1_24530 Physcomitrium patens HOM05D005444 ORTHO05D006773 1.6e-54 217.2 235 46.4
Pp3c14_5400 Physcomitrium patens HOM05D005444 ORTHO05D006773 7.5e-49 198.4 249 42.2
CARHR285770 Cardamine hirsuta HOM05D005444 ORTHO05D006773 5.6e-44 182.2 165 57.0
SGA_v2.0_scaffold203G41537 Striga asiatica HOM05D005444 ORTHO05D006773 2.1e-43 180.3 173 56.1
PGSC0003DMG402030323 Solanum tuberosum HOM05D005444 ORTHO05D006773 4.7e-43 179.1 161 54.0
Duzib170G0057 Durio zibethinus HOM05D005444 ORTHO05D006773 1.2e-38 164.5 136 59.6
Zm00001eb355820 Zea mays HOM05D005444 ORTHO05D006773 1.6e-35 154.1 160 49.4
DCAR_005353 Daucus carota HOM05D005444 ORTHO05D006773 2.8e-35 153.3 117 62.4
Aqoxy1G00926 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 2.3e-34 150.2 146 54.1
TPR.G3768 Trifolium pratense HOM05D005444 ORTHO05D006773 2.7e-30 136.7 100 67.0
MCO07G449 Micromonas commoda HOM05D005444 ORTHO05D006773 6.0e-30 135.6 231 36.8
Nn2g13370 Nelumbo nucifera HOM05D005444 ORTHO05D006773 5.1e-29 132.5 85 69.4
SGA_v2.0_scaffold203G41535 Striga asiatica HOM05D005444 ORTHO05D006773 6.6e-29 132.1 141 53.2
Aqoxy1G00927 Aquilegia oxysepala HOM05D005444 ORTHO05D006773 8.6e-29 131.7 73 78.1
unitig_747.g22036 Utricularia gibba HOM05D005444 ORTHO05D006773 9.5e-28 128.3 75 72.0
Ah.15g097630 Amaranthus hybridus HOM05D005444 ORTHO05D006773 2.8e-27 126.7 72 75.0
Medtr4g064030 Medicago truncatula HOM05D005444 ORTHO05D006773 4.1e-23 112.8 136 47.8
Os05g0110800 Oryza sativa ssp. japonica HOM05D005444 ORTHO05D006773 2.7e-22 110.2 67 71.6
unitig_747.g22037 Utricularia gibba HOM05D005444 ORTHO05D006773 8.6e-21 105.1 115 49.6
HanXRQChr06g0167871 Helianthus annuus HOM05D000219 ORTHO05D006773 1.5e-20 104.4 75 60.0
HanXRQChr10g0291051 Helianthus annuus HOM05D005444 ORTHO05D006773 2.5e-20 103.6 70 64.3
HanXRQChr10g0291061 Helianthus annuus HOM05D005444 ORTHO05D006773 2.5e-20 103.6 70 64.3
TPR.G27554 Trifolium pratense HOM05D005444 ORTHO05D006773 3.3e-20 103.2 75 73.3
TPR.G27777 Trifolium pratense HOM05D005444 ORTHO05D006773 3.4e-17 93.2 63 71.4
TPR.G376 Trifolium pratense HOM05D025391 ORTHO05D030167 9.3e-15 85.1 41 87.8
Psat5g007960 Pisum sativum HOM05D005444 ORTHO05D006773 1.6e-14 84.3 73 57.5
Glyma.11G138967 Glycine max HOM05D005444 ORTHO05D006773 7.8e-14 82.0 75 64.0
Psat4g229040 Pisum sativum HOM05D005444 ORTHO05D006773 1.7e-13 80.9 46 76.1
Phvul.005G077000 Phaseolus vulgaris HOM05D005444 ORTHO05D006773 1.5e-12 77.8 46 76.1
AUR62031662 Chenopodium quinoa HOM05D001050 ORTHO05D001270 2.5e-12 77.0 44 72.7
BcaB01g04587 Brassica carinata HOM05D000021 ORTHO05D000010 4.3e-12 76.3 111 44.1
Ah.15g097620 Amaranthus hybridus HOM05D005444 ORTHO05D006773 8.1e-11 72.0 42 73.8
COL.COLO4_35627 Corchorus olitorius HOM05D005444 ORTHO05D001950 1.2e-09 68.2 106 42.5
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.7e-08 64.3 187 30.5
TAR636G2897 Trochodendron aralioides HOM05D005444 ORTHO05D006773 2.9e-08 63.5 80 48.8
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 9.3e-07 58.5 198 25.8


User provided reference genes

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