Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 4.9e-235 817.8 526 100.0
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 3.8e-211 738.4 526 83.8
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 2.3e-200 702.6 529 85.6
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.4e-194 683.3 456 85.7
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 2.3e-192 676.0 456 85.5
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 3.1e-189 665.6 448 85.7
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 4.1e-189 665.2 458 84.3
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 6.9e-189 664.5 457 84.5
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.1e-183 647.1 458 81.9
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.5e-183 646.7 458 85.8
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 4.1e-181 638.6 535 76.8
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 2.7e-169 599.4 406 85.5
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 5.4e-165 585.1 456 81.1
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 1.6e-164 583.6 452 80.5
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 3.5e-164 582.4 455 78.7
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 4.2e-162 575.5 463 74.1
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 2.1e-161 573.2 443 76.3
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 3.6e-161 572.4 461 76.4
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 6.1e-161 571.6 465 78.1
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 8.8e-160 567.8 450 79.1
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 1.2e-159 567.4 448 78.8
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 2.0e-159 566.6 437 80.1
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 3.4e-159 565.8 458 73.8
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 7.5e-159 564.7 447 79.2
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 6.3e-158 561.6 461 73.5
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 1.1e-157 560.8 457 77.9
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 1.4e-157 560.5 432 76.6
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 4.1e-157 558.9 468 72.6
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 1.3e-155 553.9 467 75.4
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.7e-155 553.5 440 79.3
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.7e-155 553.5 464 70.7
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.9e-155 552.7 452 77.7
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.8e-155 552.4 467 75.4
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 5.0e-155 552.0 439 78.8
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.1e-154 550.8 468 76.1
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.9e-154 550.1 453 77.0
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 2.5e-154 549.7 464 70.3
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 2.5e-154 549.7 466 64.2
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 3.3e-154 549.3 448 77.2
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.2e-154 548.9 464 76.1
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.2e-153 547.4 484 69.4
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 2.8e-153 546.2 448 77.9
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 3.6e-153 545.8 458 75.8
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 1.0e-152 544.3 456 72.6
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 3.0e-152 542.7 482 63.9
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 2.6e-151 539.7 436 78.9
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.6e-151 539.7 468 75.0
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 7.5e-151 538.1 432 79.4
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 6.4e-150 535.0 425 78.6
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.4e-149 533.9 460 70.4
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 1.4e-149 533.9 451 76.1
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 1.4e-149 533.9 451 76.1
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.5e-148 529.3 432 76.2
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 5.9e-148 528.5 426 74.2
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 2.3e-147 526.6 462 68.6
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 3.9e-147 525.8 448 69.4
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 3.9e-147 525.8 450 71.3
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 3.9e-147 525.8 466 72.7
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 6.6e-147 525.0 460 69.8
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 8.6e-147 524.6 525 59.0
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.6e-147 524.6 432 75.7
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 8.6e-147 524.6 393 84.2
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 1.5e-146 523.9 456 71.7
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 4.3e-146 522.3 440 75.5
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 4.3e-146 522.3 476 71.8
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 7.3e-146 521.5 455 71.6
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 1.2e-145 520.8 438 72.4
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.2e-145 520.8 463 73.7
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 1.2e-145 520.8 427 74.9
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 1.6e-145 520.4 453 73.1
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-145 520.0 450 74.9
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.1e-145 520.0 462 75.1
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 4.7e-145 518.8 460 72.4
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 4.7e-145 518.8 454 73.3
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.0e-145 518.1 450 74.4
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 2.3e-144 516.5 462 69.9
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 2.3e-144 516.5 463 70.6
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 6.8e-144 515.0 453 71.7
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 8.9e-144 514.6 465 70.8
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 8.9e-144 514.6 431 73.8
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 9.8e-143 511.1 467 72.2
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 1.7e-142 510.4 450 71.3
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 1.7e-142 510.4 450 71.3
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.9e-142 508.8 430 74.2
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 6.4e-142 508.4 381 78.0
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 1.1e-141 507.7 409 76.0
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 2.4e-141 506.5 456 70.6
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 7.0e-141 505.0 445 71.0
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 7.0e-141 505.0 445 71.2
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 7.0e-141 505.0 445 71.0
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 1.2e-140 504.2 450 70.0
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 1.7e-139 500.4 466 69.3
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 1.1e-138 497.7 484 69.8
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 1.9e-138 496.9 438 73.7
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 2.8e-137 493.0 451 68.7
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 1.1e-136 491.1 442 73.1
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 2.3e-136 490.0 402 73.1
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 1.1e-133 481.1 468 59.4
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 2.4e-133 479.9 434 72.4
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 7.1e-133 478.4 451 66.7
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.3e-131 474.2 445 71.5
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 8.6e-131 471.5 356 73.3
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 1.1e-128 464.5 453 69.5
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.2e-127 461.1 414 73.7
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 2.6e-127 459.9 449 64.4
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 7.6e-127 458.4 453 70.0
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 3.5e-124 449.5 460 62.6
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 3.0e-123 446.4 422 70.4
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 2.6e-119 433.3 456 65.4
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 4.2e-117 426.0 459 60.8
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 4.6e-116 422.5 442 67.0
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 2.8e-113 413.3 467 62.1
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 3.6e-113 412.9 418 67.5
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 2.6e-111 406.8 415 63.6
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 9.3e-109 398.3 346 78.0
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 3.9e-107 392.9 389 63.5
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 6.2e-105 385.6 478 51.0
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.7e-102 377.5 334 69.2
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 6.4e-102 375.6 422 61.8
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 3.9e-99 366.3 392 61.7
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 6.2e-97 359.0 331 64.4
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 2.5e-93 347.1 326 75.5
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 1.3e-91 341.3 329 62.9
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 5.3e-88 329.3 344 68.9
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 5.1e-83 312.8 279 57.7
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 2.8e-81 307.0 601 42.6
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.4e-80 303.9 391 54.7
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 3.0e-75 287.0 285 74.0
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 3.9e-75 286.6 241 64.3
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 3.7e-73 280.0 475 44.4
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.6e-63 248.1 378 40.7
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.4e-51 208.4 152 65.8
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 4.1e-48 196.8 131 75.6
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.3e-46 191.8 141 63.8
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-46 191.4 141 63.8
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.2e-46 191.0 141 63.8
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 8.0e-44 182.6 182 56.6
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-41 174.9 168 54.2
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 4.9e-41 173.3 134 61.9
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-39 168.7 134 59.0
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.5e-34 151.8 95 82.1
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.5e-34 149.4 128 56.2
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.2e-33 147.9 171 48.0
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 4.4e-26 123.6 106 60.4
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-23 115.5 73 72.6
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 1.3e-22 112.1 93 62.4
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 1.3e-22 112.1 306 30.1
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 4.3e-21 107.1 56 92.9
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 5.2e-19 100.1 55 85.5
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 7.5e-18 96.3 215 31.6
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 3.3e-13 80.9 71 66.2
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.8e-12 77.8 52 76.9
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 4.7e-12 77.0 68 63.2
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 1.5e-10 72.0 82 54.9
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 2.9e-09 67.8 123 39.0
VMungo1383G2282 Vigna mungo HOM05D004623 ORTHO05D005100 2.3e-06 58.2 67 55.2
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 5.1e-06 57.0 123 35.8


User provided reference genes

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