Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L004843 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 7.8e-39 163.3 82 100.0
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 1.1e-16 89.7 63 76.2
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 1.1e-16 89.7 63 76.2
VMungo1080G1739 Vigna mungo HOM05D003527 ORTHO05D004099 1.9e-13 79.0 60 76.7
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 6.9e-11 70.5 60 68.3
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 9.0e-11 70.1 60 66.7
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 9.0e-11 70.1 60 66.7
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 1.2e-10 69.7 60 68.3
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.5e-10 69.3 60 66.7
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 1.5e-10 69.3 60 66.7
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 2.0e-10 68.9 60 68.3
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 4.5e-10 67.8 60 70.0
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 5.8e-10 67.4 60 65.0
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 1.0e-09 66.6 60 65.0
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 1.3e-09 66.2 60 66.7
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 1.7e-09 65.9 59 66.1
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 1.7e-09 65.9 60 63.3
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.7e-09 65.9 60 63.3
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 2.2e-09 65.5 60 65.0
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 2.2e-09 65.5 62 64.5
Dinv35615 Davidia involucrata HOM05D003527 ORTHO05D004099 2.9e-09 65.1 59 64.4
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 2.9e-09 65.1 60 61.7
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 3.8e-09 64.7 60 65.0
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 3.8e-09 64.7 60 66.7
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 3.8e-09 64.7 61 62.3
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 3.8e-09 64.7 60 63.3
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 6.5e-09 63.9 61 65.6
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 6.5e-09 63.9 60 66.7
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 6.5e-09 63.9 60 65.0
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 8.4e-09 63.5 60 65.0
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 8.4e-09 63.5 60 63.3
Actinidia34400 Actinidia chinensis HOM05D003527 ORTHO05D004099 1.1e-08 63.2 66 59.1
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 1.1e-08 63.2 60 63.3
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 1.4e-08 62.8 60 63.3
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.4e-08 62.8 60 65.0
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.4e-08 62.8 60 65.0
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 1.4e-08 62.8 60 65.0
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 1.9e-08 62.4 60 66.7
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 1.9e-08 62.4 61 63.9
MD04G1127100 Malus domestica HOM05D003527 ORTHO05D004099 1.9e-08 62.4 66 57.6
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.5e-08 62.0 61 63.9
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.5e-08 62.0 61 63.9
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 2.5e-08 62.0 66 57.6
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 3.2e-08 61.6 65 61.5
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 3.2e-08 61.6 65 61.5
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 3.2e-08 61.6 65 61.5
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 3.2e-08 61.6 58 60.3
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 3.2e-08 61.6 60 61.7
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 3.2e-08 61.6 60 63.3
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 4.2e-08 61.2 57 64.9
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 4.2e-08 61.2 60 61.7
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 5.5e-08 60.8 60 63.3
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 5.5e-08 60.8 60 63.3
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 7.1e-08 60.5 60 60.0
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 7.1e-08 60.5 56 62.5
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 7.1e-08 60.5 58 62.1
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 9.3e-08 60.1 60 63.3
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 9.3e-08 60.1 60 58.3
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 9.3e-08 60.1 58 63.8
Atru.chr3.3891 Acer truncatum HOM05D003527 ORTHO05D004099 1.2e-07 59.7 56 62.5
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 1.2e-07 59.7 60 60.0
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.6e-07 59.3 62 61.3
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 1.6e-07 59.3 60 61.7
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.6e-07 59.3 60 60.0
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.6e-07 59.3 61 62.3
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 1.6e-07 59.3 58 60.3
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 1.6e-07 59.3 59 61.0
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 2.1e-07 58.9 62 59.7
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 2.1e-07 58.9 58 62.1
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 2.1e-07 58.9 61 62.3
TPR.G23255 Trifolium pratense HOM05D003527 ORTHO05D004099 2.1e-07 58.9 67 53.7
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 2.7e-07 58.5 60 61.7
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 3.5e-07 58.2 60 58.3
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 3.5e-07 58.2 60 60.0
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 3.5e-07 58.2 60 61.7
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 6.1e-07 57.4 58 58.6
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 6.1e-07 57.4 59 57.6
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 6.1e-07 57.4 60 60.0
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 7.9e-07 57.0 59 59.3
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 7.9e-07 57.0 59 59.3
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 7.9e-07 57.0 59 62.7
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.0e-06 56.6 58 56.9
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.0e-06 56.6 58 56.9
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.0e-06 56.6 55 61.8
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 1.0e-06 56.6 58 56.9
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 1.0e-06 56.6 60 61.7
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.3e-06 56.2 63 52.4
RcHm_v2.0_Chr2g0141581 Rosa chinensis HOM05D003527 ORTHO05D004099 1.3e-06 56.2 57 57.9
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 1.8e-06 55.8 60 60.0
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.8e-06 55.8 55 61.8
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 2.3e-06 55.5 58 60.3
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 3.0e-06 55.1 61 59.0
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 3.0e-06 55.1 57 61.4
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.0e-06 55.1 58 55.2
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 3.0e-06 55.1 57 56.1
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 3.0e-06 55.1 60 58.3
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 3.9e-06 54.7 56 64.3
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 3.9e-06 54.7 60 56.7
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 3.9e-06 54.7 57 56.1
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 5.1e-06 54.3 60 60.0
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 5.1e-06 54.3 60 56.7
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 5.1e-06 54.3 64 56.2
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 6.7e-06 53.9 60 60.0
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 6.7e-06 53.9 59 59.3
arahy.Tifrunner.gnm1.ann1.6Q00VM Arachis hypogaea HOM05D003527 ORTHO05D004099 8.7e-06 53.5 60 53.3
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 8.7e-06 53.5 61 60.7
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 8.7e-06 53.5 57 59.6


User provided reference genes

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