Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 1.4e-125 453.0 229 100.0
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 2.8e-102 375.6 229 83.8
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 2.9e-91 339.0 234 81.6
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 2.0e-79 299.7 233 73.0
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 5.9e-76 288.1 233 70.0
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 5.9e-76 288.1 233 70.0
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 2.6e-71 272.7 237 67.1
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 9.1e-61 237.7 219 59.8
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 1.5e-58 230.3 203 65.5
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 2.1e-57 226.5 184 67.9
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 4.7e-57 225.3 222 57.2
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 6.1e-57 224.9 222 58.6
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 3.0e-56 222.6 222 57.2
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 2.6e-55 219.5 229 54.1
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 9.8e-55 217.6 170 64.7
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 4.8e-54 215.3 223 57.4
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 1.1e-53 214.2 156 67.9
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 2.4e-53 213.0 184 62.5
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.4e-53 213.0 156 67.3
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 4.1e-53 212.2 221 54.3
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 5.4e-53 211.8 214 55.6
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 7.0e-53 211.5 198 56.1
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 1.6e-52 210.3 208 58.2
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.6e-52 210.3 220 55.0
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 2.7e-52 209.5 222 57.2
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 4.5e-52 208.8 139 76.3
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 1.3e-51 207.2 149 69.8
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 1.7e-51 206.8 203 55.7
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 2.9e-51 206.1 221 55.7
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 2.9e-51 206.1 221 55.7
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.1e-50 204.1 162 64.8
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 4.2e-50 202.2 228 53.5
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 5.5e-50 201.8 208 52.9
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 7.2e-50 201.4 188 61.7
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 1.6e-49 200.3 189 58.2
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 2.1e-49 199.9 228 50.9
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 2.1e-49 199.9 221 51.6
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 3.6e-49 199.1 226 50.4
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 4.7e-49 198.7 177 57.6
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 4.7e-49 198.7 210 52.9
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 8.0e-49 198.0 221 55.2
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 8.0e-49 198.0 210 52.9
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 3.0e-48 196.1 227 52.9
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 2.6e-47 193.0 196 54.6
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 9.8e-47 191.0 174 59.8
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 9.8e-47 191.0 182 56.0
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 8.3e-46 188.0 145 62.1
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 1.1e-45 187.6 190 56.8
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 3.2e-45 186.0 186 53.8
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 3.2e-45 186.0 172 55.8
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 9.2e-45 184.5 225 50.7
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 1.2e-44 184.1 220 49.1
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 4.5e-44 182.2 206 49.5
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 4.5e-44 182.2 144 61.8
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 1.7e-43 180.3 236 46.2
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 1.7e-43 180.3 153 58.8
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 2.3e-43 179.9 225 48.0
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 2.3e-43 179.9 212 51.4
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 2.9e-43 179.5 211 48.8
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 5.0e-43 178.7 156 57.7
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 8.6e-43 177.9 113 70.8
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 8.6e-43 177.9 147 60.5
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 1.1e-42 177.6 147 59.9
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 1.1e-42 177.6 147 59.9
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 1.5e-42 177.2 151 60.3
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 1.5e-42 177.2 151 60.3
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 1.9e-42 176.8 146 59.6
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 2.5e-42 176.4 131 66.4
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 3.3e-42 176.0 128 67.2
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 4.3e-42 175.6 183 51.9
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 1.2e-41 174.1 221 49.3
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 1.2e-41 174.1 203 50.2
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 1.6e-41 173.7 156 56.4
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 1.6e-41 173.7 157 54.8
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 2.8e-41 172.9 167 56.9
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 6.1e-41 171.8 164 54.3
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 6.8e-40 168.3 218 48.2
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 6.8e-40 168.3 144 59.0
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 6.8e-40 168.3 144 59.0
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 8.9e-40 167.9 132 62.9
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 4.4e-39 165.6 185 49.2
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 9.8e-39 164.5 124 62.9
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 1.7e-38 163.7 129 60.5
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 1.1e-37 161.0 112 63.4
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 1.4e-37 160.6 119 63.0
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 5.4e-37 158.7 194 46.4
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 3.5e-36 156.0 119 58.8
VMungo0540G0573 Vigna mungo HOM05D007263 ORTHO05D009187 4.6e-36 155.6 97 82.5
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 1.7e-35 153.7 99 74.7
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 6.6e-35 151.8 181 46.4
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 2.5e-34 149.8 148 52.7
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 1.2e-33 147.5 132 56.1
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 2.8e-33 146.4 133 56.4
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 3.6e-33 146.0 133 56.4
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 8.0e-33 144.8 221 44.3
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 2.3e-32 143.3 141 56.0
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 1.5e-31 140.6 139 55.4
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 1.5e-31 140.6 140 56.4
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 2.4e-29 133.3 127 52.0
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 2.1e-25 120.2 262 35.5
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 1.1e-24 117.9 96 60.4
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 8.9e-24 114.8 145 46.9
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 1.3e-22 110.9 183 41.5
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 4.9e-22 109.0 126 49.2
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 4.9e-22 109.0 120 48.3
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 5.4e-21 105.5 144 40.3
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 2.5e-18 96.7 73 60.3
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 1.6e-17 94.0 114 41.2
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 8.4e-14 81.6 108 40.7
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 5.4e-13 79.0 134 35.1
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 9.3e-13 78.2 56 67.9
MCO15G394 Micromonas commoda HOM05D003483 ORTHO05D004101 3.1e-08 63.2 144 30.6
Nitab4.5_0002016g0120 Nicotiana tabacum HOM05D002878 ORTHO05D003649 1.2e-07 61.2 119 36.1
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 7.6e-07 58.5 88 33.0
Peaxi162Scf00450g00316 Petunia axillaris HOM05D002878 ORTHO05D003649 1.3e-06 57.8 112 33.9
Sopen02g035540 Solanum pennellii HOM05D002878 ORTHO05D003649 1.7e-06 57.4 123 33.3
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.9e-06 56.6 71 43.7
Nitab4.5_0002440g0040 Nicotiana tabacum HOM05D002878 ORTHO05D003649 2.9e-06 56.6 123 36.6
COL.COLO4_11419 Corchorus olitorius HOM05D002878 ORTHO05D003649 3.8e-06 56.2 134 33.6
PGR004G0880 Punica granatum HOM05D002878 ORTHO05D003649 3.8e-06 56.2 134 34.3
Eucgr.I00922 Eucalyptus grandis HOM05D002878 ORTHO05D003649 6.4e-06 55.5 126 33.3
PGSC0003DMG400004020 Solanum tuberosum HOM05D002878 ORTHO05D003649 6.4e-06 55.5 123 32.5
arahy.Tifrunner.gnm1.ann1.5ITW1B Arachis hypogaea HOM05D002878 ORTHO05D003649 8.4e-06 55.1 138 34.8
Solyc02g090890.4 Solanum lycopersicum HOM05D002878 ORTHO05D003649 8.4e-06 55.1 123 31.7
PGSC0003DMG400001473 Solanum tuberosum HOM05D005170 ORTHO05D006985 8.4e-06 55.1 136 31.6


User provided reference genes

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