Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L003643 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 6.4e-55 217.2 114 100.0
VMungo1080G1431 Vigna mungo HOM05D001886 ORTHO05D004007 1.0e-44 183.3 118 85.6
Glyma.13G334000 Glycine max HOM05D001886 ORTHO05D004007 4.7e-34 147.9 116 72.4
Lj3g0013632 Lotus japonicus HOM05D001886 ORTHO05D004007 1.1e-30 136.7 118 65.3
Lalb_Chr03g0026781 Lupinus albus HOM05D001886 ORTHO05D004007 8.9e-25 117.1 115 58.3
TPR.G34284 Trifolium pratense HOM05D001886 ORTHO05D004007 1.3e-23 113.2 111 58.6
Medtr2g096630 Medicago truncatula HOM05D001886 ORTHO05D004007 1.1e-22 110.2 111 58.6
CiPaw.13G097900 Carya illinoinensis HOM05D001886 ORTHO05D004007 1.5e-19 99.8 114 55.3
Gohir.A07G096100 Gossypium hirsutum HOM05D001886 ORTHO05D004007 4.8e-18 94.7 96 54.2
Gohir.D07G100500 Gossypium hirsutum HOM05D001886 ORTHO05D004007 4.8e-18 94.7 96 54.2
Gorai.001G108400 Gossypium raimondii HOM05D001886 ORTHO05D004007 4.8e-18 94.7 96 54.2
Haze_24047 Corylus avellana HOM05D001886 ORTHO05D004007 1.8e-17 92.8 114 50.0
Prupe.6G081800 Prunus persica HOM05D001886 ORTHO05D004007 2.4e-17 92.4 116 52.6
Cfa011462 Carpinus fangiana HOM05D001886 ORTHO05D004007 4.0e-17 91.7 95 55.8
Duzib150G0204 Durio zibethinus HOM05D001886 ORTHO05D004007 9.0e-17 90.5 114 47.4
RcHm_v2.0_Chr5g0063581 Rosa chinensis HOM05D001886 ORTHO05D004007 9.0e-17 90.5 111 52.3
FAN16G1011 Fragaria x ananassa HOM05D001886 ORTHO05D004007 2.0e-16 89.4 111 51.4
FAN21G2352 Fragaria x ananassa HOM05D001886 ORTHO05D004007 2.0e-16 89.4 111 50.5
Thecc.09G325900 Theobroma cacao HOM05D001886 ORTHO05D004007 2.0e-16 89.4 108 49.1
arahy.Tifrunner.gnm1.ann1.F78JUJ Arachis hypogaea HOM05D001886 ORTHO05D004007 3.4e-16 88.6 103 54.4
Nn2g12929 Nelumbo nucifera HOM05D001886 ORTHO05D004007 7.6e-16 87.4 108 47.2
TPR.G21449 Trifolium pratense HOM05D001886 ORTHO05D004007 7.6e-16 87.4 112 49.1
COL.COLO4_18467 Corchorus olitorius HOM05D001886 ORTHO05D004007 9.9e-16 87.0 110 47.3
FAN25G1849 Fragaria x ananassa HOM05D001886 ORTHO05D004007 1.3e-15 86.7 95 53.7
FvH4_3g35450 Fragaria vesca HOM05D001886 ORTHO05D004007 1.7e-15 86.3 116 49.1
MD03G1097600 Malus domestica HOM05D001886 ORTHO05D004007 1.7e-15 86.3 114 48.2
Medtr7g099860 Medicago truncatula HOM05D001886 ORTHO05D004007 1.7e-15 86.3 112 49.1
FAN11G3942 Fragaria x ananassa HOM05D001886 ORTHO05D004007 2.9e-15 85.5 95 53.7
Ciclev10030058m.g Citrus clementina HOM05D001886 ORTHO05D004007 6.4e-15 84.3 95 54.7
THA.LOC104800648 Tarenaya hassleriana HOM05D001886 ORTHO05D004007 1.4e-14 83.2 93 51.6
TAR623G0309 Trochodendron aralioides HOM05D001886 ORTHO05D004007 1.4e-14 83.2 114 45.6
Atru.chr3.3836 Acer truncatum HOM05D001886 ORTHO05D004007 5.4e-14 81.3 107 46.7
CANSAT01G0239 Cannabis sativa HOM05D001886 ORTHO05D004007 7.1e-14 80.9 97 51.5
Glyma.19G172900 Glycine max HOM05D001886 ORTHO05D004007 7.1e-14 80.9 113 44.2
Gorai.003G135300 Gossypium raimondii HOM05D001886 ORTHO05D004007 7.1e-14 80.9 96 51.0
Gohir.D03G128600 Gossypium hirsutum HOM05D001886 ORTHO05D004007 2.7e-13 79.0 96 50.0
Lj1g0006648 Lotus japonicus HOM05D001886 ORTHO05D004007 3.5e-13 78.6 95 48.4
Hund04991 Selenicereus undatus HOM05D000437 ORTHO05D000324 3.5e-13 78.6 91 52.7
arahy.Tifrunner.gnm1.ann1.5KK3LT Arachis hypogaea HOM05D001886 ORTHO05D004007 4.6e-13 78.2 88 53.4
Nn2g10427 Nelumbo nucifera HOM05D001886 ORTHO05D004007 6.0e-13 77.8 107 42.1
Cpa.g.sc190.15 Carica papaya HOM05D001886 ORTHO05D004007 7.9e-13 77.4 93 47.3
Lj1g0019269 Lotus japonicus HOM05D001886 ORTHO05D004007 7.9e-13 77.4 96 50.0
AUR62041758 Chenopodium quinoa HOM05D001886 ORTHO05D004007 1.0e-12 77.0 94 45.7
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.0e-12 77.0 114 42.1
Phvul.001G169700 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 1.0e-12 77.0 113 43.4
Ca_08781_v3 Cicer arietinum L. HOM05D001886 ORTHO05D004007 1.3e-12 76.6 107 45.8
Lj5g0001892 Lotus japonicus HOM05D001886 ORTHO05D004007 1.3e-12 76.6 97 44.3
Psat3g049240 Pisum sativum HOM05D001886 ORTHO05D004007 1.3e-12 76.6 95 47.4
A09p66220 Brassica napus HOM05D001886 ORTHO05D004007 1.8e-12 76.3 105 42.9
MBI14_g24316_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D004007 1.8e-12 76.3 107 45.8
Psat3g049080 Pisum sativum HOM05D001886 ORTHO05D004007 1.8e-12 76.3 96 47.9
Rhsim05G0188300 Rhododendron simsii HOM05D001886 ORTHO05D004007 2.3e-12 75.9 95 47.4
Ah.01g020040 Amaranthus hybridus HOM05D001886 ORTHO05D004007 3.0e-12 75.5 94 44.7
CARHR007610 Cardamine hirsuta HOM05D001886 ORTHO05D004007 3.0e-12 75.5 94 43.6
Thhalv10017464m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 3.0e-12 75.5 95 46.3
BcaB02g06704 Brassica carinata HOM05D001886 ORTHO05D004007 3.9e-12 75.1 105 42.9
BraA09t41960Z Brassica rapa HOM05D001886 ORTHO05D004007 3.9e-12 75.1 105 41.9
Cfa017419 Carpinus fangiana HOM05D001886 ORTHO05D004007 3.9e-12 75.1 95 48.4
PGR004G0749 Punica granatum HOM05D001886 ORTHO05D004007 5.1e-12 74.7 114 43.0
Thhalv10009977m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 6.7e-12 74.3 105 42.9
Glyma.03G172000 Glycine max HOM05D001886 ORTHO05D004007 6.7e-12 74.3 113 41.6
Sed0011835 Sechium edule HOM05D001886 ORTHO05D004007 6.7e-12 74.3 94 47.9
C05p05710 Brassica napus HOM05D001886 ORTHO05D004007 8.7e-12 73.9 94 43.6
CiPaw.09G189700 Carya illinoinensis HOM05D001886 ORTHO05D004007 8.7e-12 73.9 94 50.0
Actinidia05303 Actinidia chinensis HOM05D001886 ORTHO05D004007 1.1e-11 73.6 95 43.2
ClCG02G020370 Citrullus lanatus HOM05D001886 ORTHO05D004007 1.1e-11 73.6 92 50.0
MELO3C013683.2 Cucumis melo HOM05D001886 ORTHO05D004007 1.1e-11 73.6 92 50.0
Lsat_1_v5_gn_6_31360 Lactuca sativa HOM05D001886 ORTHO05D004007 1.1e-11 73.6 96 44.8
MD12G1139400 Malus domestica HOM05D001886 ORTHO05D004007 1.1e-11 73.6 95 49.5
Prupe.6G251200 Prunus persica HOM05D001886 ORTHO05D004007 1.1e-11 73.6 95 47.4
AUR62036093 Chenopodium quinoa HOM05D001886 ORTHO05D004007 1.5e-11 73.2 115 46.1
TAR636G3006 Trochodendron aralioides HOM05D001886 ORTHO05D004007 1.5e-11 73.2 96 46.9
PGR142G2414 Punica granatum HOM05D001886 ORTHO05D004007 1.9e-11 72.8 107 43.0
BolC5t29341H Brassica oleracea HOM05D001886 ORTHO05D015777 2.5e-11 72.4 94 43.6
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 3.3e-11 72.0 99 43.4
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 4.3e-11 71.6 95 44.2
CiPaw.10G143600 Carya illinoinensis HOM05D001886 ORTHO05D004007 4.3e-11 71.6 95 44.2
TWI74G0754 Tripterygium wilfordii HOM05D001886 ORTHO05D004007 4.3e-11 71.6 96 41.7
CSS0007004 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 5.6e-11 71.2 96 41.7
CSS0016629 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 5.6e-11 71.2 96 41.7
AUR62041036 Chenopodium quinoa HOM05D001886 ORTHO05D004007 5.6e-11 71.2 94 43.6
Haze_20751 Corylus avellana HOM05D001886 ORTHO05D004007 5.6e-11 71.2 96 50.0
HanXRQChr13g0398891 Helianthus annuus HOM05D001886 ORTHO05D004007 5.6e-11 71.2 96 42.7
BcaC07g42494 Brassica carinata HOM05D001886 ORTHO05D004007 7.4e-11 70.9 105 40.0
Migut.J00350 Erythranthe guttata HOM05D001886 ORTHO05D004007 7.4e-11 70.9 103 40.8
Eucgr.A01246 Eucalyptus grandis HOM05D001886 ORTHO05D004007 7.4e-11 70.9 112 41.1
Hma1.2p1_1481F.1_g286140 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 7.4e-11 70.9 96 42.7
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 9.6e-11 70.5 95 43.2
Sp4g11590 Schrenkiella parvula HOM05D001886 ORTHO05D004007 9.6e-11 70.5 94 42.6
AT1G07795 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 1.3e-10 70.1 105 41.0
Ciclev10013572m.g Citrus clementina HOM05D001886 ORTHO05D004007 1.3e-10 70.1 118 42.4
MD04G1123500 Malus domestica HOM05D001886 ORTHO05D004007 1.3e-10 70.1 95 45.3
PSO339G5886 Papaver somniferum HOM05D001886 ORTHO05D004007 1.3e-10 70.1 101 34.7
ECA233G1369 Erigeron canadensis HOM05D001886 ORTHO05D004007 1.6e-10 69.7 115 40.0
Hma1.2p1_1707F.1_g298490 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 2.1e-10 69.3 96 41.7
Lalb_Chr06g0171021 Lupinus albus HOM05D001886 ORTHO05D004007 2.1e-10 69.3 97 43.3
AL1G18080 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 2.8e-10 68.9 105 41.0
Lalb_Chr01g0019251 Lupinus albus HOM05D001886 ORTHO05D004007 2.8e-10 68.9 112 42.0
BcaC01g04990 Brassica carinata HOM05D001886 ORTHO05D004007 3.6e-10 68.6 94 43.6
C03p31370 Brassica napus HOM05D001886 ORTHO05D004007 3.6e-10 68.6 94 43.6
Aqoxy2G02038 Aquilegia oxysepala HOM05D001886 ORTHO05D004007 4.8e-10 68.2 112 42.0
CsaV3_6G022260 Cucumis sativus L. HOM05D001886 ORTHO05D004007 4.8e-10 68.2 93 46.2
Gohir.A03G039500 Gossypium hirsutum HOM05D001886 ORTHO05D004007 4.8e-10 68.2 72 54.2
BolC3t15485H Brassica oleracea HOM05D001886 ORTHO05D004007 6.2e-10 67.8 94 42.6
MELO3C003112.2 Cucumis melo HOM05D001886 ORTHO05D004007 6.2e-10 67.8 95 40.0
CsaV3_4G024780 Cucumis sativus L. HOM05D001886 ORTHO05D004007 6.2e-10 67.8 95 40.0
Sc12g0001630 Simmondsia chinensis HOM05D001886 ORTHO05D004007 6.2e-10 67.8 112 42.0
A03p26260 Brassica napus HOM05D001886 ORTHO05D004007 8.1e-10 67.4 95 44.2
BraA03t11840Z Brassica rapa HOM05D001886 ORTHO05D004007 8.1e-10 67.4 95 44.2
CANSAT35G1619 Cannabis sativa HOM05D001886 ORTHO05D004007 8.1e-10 67.4 112 36.6
Hma1.2p1_0624F.1_g191360 Hydrangea macrophylla HOM05D001886 ORTHO05D004007 8.1e-10 67.4 94 41.5
SGA_v2.0_scaffold126G33809 Striga asiatica HOM05D001886 ORTHO05D004007 8.1e-10 67.4 95 41.1
BcaC02g08141 Brassica carinata HOM05D001886 ORTHO05D004007 1.1e-09 67.0 94 41.5
C04p57930 Brassica napus HOM05D001886 ORTHO05D004007 1.1e-09 67.0 94 41.5
BolC4t27319H Brassica oleracea HOM05D001886 ORTHO05D004007 1.1e-09 67.0 94 41.5
A04p21800 Brassica napus HOM05D001886 ORTHO05D004007 1.4e-09 66.6 110 39.1
Carub.0001s0716 Capsella rubella HOM05D001886 ORTHO05D004007 1.4e-09 66.6 105 40.0
QL05p010714 Quercus lobata HOM05D001886 ORTHO05D004007 1.4e-09 66.6 95 46.3
QL07p047484 Quercus lobata HOM05D001886 ORTHO05D004007 1.4e-09 66.6 95 46.3
Aa31LG5G7470 Aethionema arabicum HOM05D001886 ORTHO05D004007 1.8e-09 66.2 106 37.7
COL.COLO4_14848 Corchorus olitorius HOM05D001886 ORTHO05D004007 3.1e-09 65.5 113 41.6
Manes.09G087200 Manihot esculenta HOM05D001886 ORTHO05D004007 3.1e-09 65.5 112 41.1
CiPaw.09G189600 Carya illinoinensis HOM05D001886 ORTHO05D004007 4.0e-09 65.1 94 43.6
Lj3P970T51 Lonicera japonica HOM05D001886 ORTHO05D004007 5.3e-09 64.7 96 41.7
BcaB01g03123 Brassica carinata HOM05D001886 ORTHO05D004007 6.9e-09 64.3 93 40.9
BraA04t17747Z Brassica rapa HOM05D001886 ORTHO05D004007 6.9e-09 64.3 109 38.5
ClCG04G008370 Citrullus lanatus HOM05D001886 ORTHO05D004007 6.9e-09 64.3 95 37.9
DCAR_009245 Daucus carota HOM05D001886 ORTHO05D004007 6.9e-09 64.3 101 39.6
Nitab4.5_0003267g0060 Nicotiana tabacum HOM05D001886 ORTHO05D004007 9.0e-09 63.9 88 45.5
BcaB06g28246 Brassica carinata HOM05D001886 ORTHO05D004007 1.2e-08 63.5 94 42.6
SalBow4G1303 Salvia bowleyana HOM05D001886 ORTHO05D004007 1.5e-08 63.2 95 42.1
SalBow4G2596 Salvia bowleyana HOM05D001886 ORTHO05D004007 1.5e-08 63.2 95 42.1
C08p50390 Brassica napus HOM05D001886 ORTHO05D004007 3.4e-08 62.0 107 38.3
BolC8t52567H Brassica oleracea HOM05D001886 ORTHO05D004007 3.4e-08 62.0 107 38.3
RcHm_v2.0_Chr3g0467161 Rosa chinensis HOM05D001886 ORTHO05D004007 5.8e-08 61.2 95 41.1
Sopen09g005220 Solanum pennellii HOM05D001886 ORTHO05D004007 5.8e-08 61.2 101 36.6
PGSC0003DMG400008923 Solanum tuberosum HOM05D001886 ORTHO05D004007 5.8e-08 61.2 101 37.6
CARHR132080 Cardamine hirsuta HOM05D001886 ORTHO05D004007 7.6e-08 60.8 92 40.2
AL4G34020 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 1.3e-07 60.1 92 38.0
Carub.0004s1945 Capsella rubella HOM05D001886 ORTHO05D004007 1.3e-07 60.1 94 39.4
Actinidia26440 Actinidia chinensis HOM05D001886 ORTHO05D004007 1.7e-07 59.7 83 41.0
AT2G28725 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 1.7e-07 59.7 103 40.8
Sc20g0004970 Simmondsia chinensis HOM05D001886 ORTHO05D004007 1.7e-07 59.7 95 41.1
Sp4g19850 Schrenkiella parvula HOM05D001886 ORTHO05D004007 2.2e-07 59.3 92 39.1
BcaB01g03772 Brassica carinata HOM05D001886 ORTHO05D004007 2.9e-07 58.9 96 38.5
BraA03t11311Z Brassica rapa HOM05D001886 ORTHO05D004007 2.9e-07 58.9 96 38.5
Thhalv10017427m.g Eutrema salsugineum HOM05D001886 ORTHO05D004007 2.9e-07 58.9 93 38.7
VMungo1383G2619 Vigna mungo HOM05D001886 ORTHO05D004007 2.9e-07 58.9 112 35.7
BcaC01g05612 Brassica carinata HOM05D001886 ORTHO05D004007 3.8e-07 58.5 96 38.5
C03p24330 Brassica napus HOM05D001886 ORTHO05D004007 3.8e-07 58.5 96 38.5
Solyc09g010480.1 Solanum lycopersicum HOM05D001886 ORTHO05D004007 3.8e-07 58.5 101 35.6
Aa31LG5G22950 Aethionema arabicum HOM05D001886 ORTHO05D004007 6.4e-07 57.8 90 38.9
AT2G37530 Arabidopsis thaliana HOM05D001886 ORTHO05D004007 8.4e-07 57.4 91 38.5
A03p20700 Brassica napus HOM05D001886 ORTHO05D004007 1.1e-06 57.0 96 37.5
BolC3t14831H Brassica oleracea HOM05D001886 ORTHO05D004007 1.1e-06 57.0 96 37.5
Potri.006G083800 Populus trichocarpa HOM05D001886 ORTHO05D004007 1.1e-06 57.0 95 42.1
Sabra06G0063400 Salix brachista HOM05D001886 ORTHO05D004007 1.4e-06 56.6 106 43.4
AL4G23260 Arabidopsis lyrata HOM05D001886 ORTHO05D004007 1.9e-06 56.2 94 39.4
CSS0013260 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.9e-06 56.2 120 35.8
CSS0032829 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D004007 1.9e-06 56.2 120 35.8
CARHR121860 Cardamine hirsuta HOM05D001886 ORTHO05D004007 2.4e-06 55.8 94 38.3
Sed0021579 Sechium edule HOM05D001886 ORTHO05D004007 2.4e-06 55.8 98 32.7
Phvul.007G157600 Phaseolus vulgaris HOM05D001886 ORTHO05D004007 3.2e-06 55.5 96 36.5
VMungo0720G0839 Vigna mungo HOM05D001886 ORTHO05D004007 3.2e-06 55.5 97 39.2
Glyma.10G043800 Glycine max HOM05D001886 ORTHO05D004007 5.5e-06 54.7 95 36.8
Nitab4.5_0002077g0050 Nicotiana tabacum HOM05D001886 ORTHO05D004007 5.5e-06 54.7 116 36.2
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 5.5e-06 54.7 114 34.2
Actinidia11249 Actinidia chinensis HOM05D001886 ORTHO05D004007 9.3e-06 53.9 82 37.8
FAN14G5259 Fragaria x ananassa HOM05D001886 ORTHO05D004007 9.3e-06 53.9 95 37.9


User provided reference genes

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