Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L003546 Phaseolus vulgaris HOM05D005577 ORTHO05D006941 4.0e-265 917.5 458 100.0
Glyma.05G148900 Glycine max HOM05D005577 ORTHO05D006941 3.0e-244 848.2 458 90.8
Glyma.08G105600 Glycine max HOM05D005577 ORTHO05D006941 2.8e-242 841.6 458 90.2
Medtr8g097160 Medicago truncatula HOM05D005577 ORTHO05D006941 5.4e-238 827.4 458 88.6
Ca_18016_v3 Cicer arietinum L. HOM05D005577 ORTHO05D006941 7.0e-238 827.0 456 89.5
Lj4g0002319 Lotus japonicus HOM05D005577 ORTHO05D006941 3.6e-234 814.7 459 87.6
TPR.G26572 Trifolium pratense HOM05D005577 ORTHO05D006941 2.3e-233 812.0 458 87.3
Lalb_Chr07g0187001 Lupinus albus HOM05D005577 ORTHO05D006941 1.2e-224 783.1 458 82.8
arahy.Tifrunner.gnm1.ann1.V9CB21 Arachis hypogaea HOM05D005577 ORTHO05D006941 3.1e-217 758.4 461 80.0
arahy.Tifrunner.gnm1.ann1.HTD3J8 Arachis hypogaea HOM05D005577 ORTHO05D006941 5.8e-216 754.2 455 80.2
TAR629G1549 Trochodendron aralioides HOM05D005577 ORTHO05D006941 2.1e-210 735.7 458 77.7
Manes.13G009300 Manihot esculenta HOM05D005577 ORTHO05D006941 6.2e-210 734.2 456 77.6
Manes.12G008900 Manihot esculenta HOM05D005577 ORTHO05D006941 4.0e-209 731.5 456 78.3
GSVIVG01029087001 Vitis vinifera HOM05D005577 ORTHO05D006941 5.3e-209 731.1 454 78.2
Duzib248G1391 Durio zibethinus HOM05D005577 ORTHO05D006941 7.6e-208 727.2 455 76.9
Nn3g16413 Nelumbo nucifera HOM05D005577 ORTHO05D006941 9.9e-208 726.9 458 76.6
Cfa009383 Carpinus fangiana HOM05D005577 ORTHO05D006941 3.2e-206 721.8 438 79.0
Gohir.D02G146900 Gossypium hirsutum HOM05D005577 ORTHO05D006941 4.2e-206 721.5 455 77.4
Gorai.005G164500 Gossypium raimondii HOM05D005577 ORTHO05D006941 1.6e-205 719.5 455 77.1
Ciclev10031511m.g Citrus clementina HOM05D005577 ORTHO05D006941 2.1e-205 719.2 452 77.0
Haze_12444 Corylus avellana HOM05D005577 ORTHO05D006941 2.7e-205 718.8 467 74.7
Gohir.A03G117000 Gossypium hirsutum HOM05D005577 ORTHO05D006941 4.6e-205 718.0 449 77.1
Potri.003G169300 Populus trichocarpa HOM05D005577 ORTHO05D006941 3.0e-204 715.3 457 76.6
Thecc.02G202700 Theobroma cacao HOM05D005577 ORTHO05D006941 5.1e-204 714.5 443 77.2
TWI36G1278 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 6.7e-204 714.1 441 77.3
Migut.K00987 Erythranthe guttata HOM05D005577 ORTHO05D006941 1.5e-203 713.0 455 74.9
Sopen04g017360 Solanum pennellii HOM05D005577 ORTHO05D006941 1.9e-203 712.6 456 75.7
BcaB03g15345 Brassica carinata HOM05D005577 ORTHO05D006941 2.5e-203 712.2 452 73.9
Hund25478 Selenicereus undatus HOM05D005577 ORTHO05D006941 4.3e-203 711.4 452 74.6
QL03p051875 Quercus lobata HOM05D005577 ORTHO05D006941 5.6e-203 711.1 446 76.5
Peaxi162Scf00128g01539 Petunia axillaris HOM05D005577 ORTHO05D006941 9.6e-203 710.3 456 75.7
TWI75G1135 Tripterygium wilfordii HOM05D005577 ORTHO05D006941 9.6e-203 710.3 441 77.3
Eucgr.H04616 Eucalyptus grandis HOM05D005577 ORTHO05D006941 2.8e-202 708.8 452 75.7
Thhalv10018528m.g Eutrema salsugineum HOM05D005577 ORTHO05D006941 2.4e-201 705.7 451 73.4
Rhsim12G0094300 Rhododendron simsii HOM05D005577 ORTHO05D006941 2.4e-201 705.7 453 75.3
MSTRG.487 Avicennia marina HOM05D005577 ORTHO05D006941 6.9e-201 704.1 455 74.9
Sp5g22260 Schrenkiella parvula HOM05D005577 ORTHO05D006941 1.2e-200 703.4 452 73.5
EL10Ac6g13532 Beta vulgaris HOM05D005577 ORTHO05D006941 1.5e-200 703.0 452 74.3
CSS0033060 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 1.5e-200 703.0 456 76.3
CiPaw.06G104800 Carya illinoinensis HOM05D005577 ORTHO05D006941 2.0e-200 702.6 452 75.2
CsaV3_6G008170 Cucumis sativus L. HOM05D005577 ORTHO05D006941 2.0e-200 702.6 438 75.6
Nitab4.5_0008235g0010 Nicotiana tabacum HOM05D005577 ORTHO05D006941 3.4e-200 701.8 451 75.8
CSS0039862 Camellia sinensis var. sinensis HOM05D005577 ORTHO05D006941 7.6e-200 700.7 460 75.2
FAN12G2046 Fragaria x ananassa HOM05D005577 ORTHO05D006941 1.7e-199 699.5 436 75.7
THA.LOC104807138 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 2.2e-199 699.1 453 74.2
Sed0021319 Sechium edule HOM05D005577 ORTHO05D006941 2.9e-199 698.7 457 72.9
Cc11_g17150 Coffea canephora HOM05D005577 ORTHO05D006941 4.9e-199 698.0 436 76.1
Nitab4.5_0001010g0020 Nicotiana tabacum HOM05D005577 ORTHO05D006941 8.4e-199 697.2 451 75.6
Lj6A829T30 Lonicera japonica HOM05D005577 ORTHO05D006941 1.1e-198 696.8 477 73.0
Sc11g0000360 Simmondsia chinensis HOM05D005577 ORTHO05D006941 1.1e-198 696.8 457 75.1
SalBow2G2693 Salvia bowleyana HOM05D005577 ORTHO05D006941 1.9e-198 696.0 456 74.1
FAN07G0551 Fragaria x ananassa HOM05D005577 ORTHO05D006941 3.2e-198 695.3 435 75.6
FAN22G0128 Fragaria x ananassa HOM05D005577 ORTHO05D006941 7.1e-198 694.1 435 75.6
ATR0561G025 Amborella trichopoda HOM05D005577 ORTHO05D006941 1.2e-197 693.3 456 72.4
A02p14150 Brassica napus HOM05D005577 ORTHO05D006941 1.2e-197 693.3 452 72.3
RcHm_v2.0_Chr4g0418271 Rosa chinensis HOM05D005577 ORTHO05D006941 1.6e-197 693.0 435 76.1
DCAR_024669 Daucus carota HOM05D005577 ORTHO05D006941 2.1e-197 692.6 486 69.8
Dinv11687 Davidia involucrata HOM05D005577 ORTHO05D006941 2.1e-197 692.6 440 75.7
C02p22860 Brassica napus HOM05D005577 ORTHO05D006941 4.6e-197 691.4 452 71.9
BraA07t30887Z Brassica rapa HOM05D005577 ORTHO05D006941 6.0e-197 691.0 471 69.9
Aqoxy5G03309 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 1.3e-196 689.9 459 71.9
Carub.0002s1360 Capsella rubella HOM05D005577 ORTHO05D006941 6.7e-196 687.6 452 71.5
CANSAT01G0699 Cannabis sativa HOM05D005577 ORTHO05D006941 8.7e-196 687.2 441 75.7
COL.COLO4_20442 Corchorus olitorius HOM05D005577 ORTHO05D006941 8.7e-196 687.2 455 73.8
A07p32630 Brassica napus HOM05D005577 ORTHO05D006941 1.9e-195 686.0 463 70.8
AT1G67320 Arabidopsis thaliana HOM05D005577 ORTHO05D006941 4.3e-195 684.9 452 71.5
MD13G1121900 Malus domestica HOM05D005577 ORTHO05D006941 5.6e-195 684.5 459 72.5
Oeu058914.1 Olea europaea HOM05D005577 ORTHO05D006941 7.4e-195 684.1 474 69.6
AL2G25840 Arabidopsis lyrata HOM05D005577 ORTHO05D006941 9.6e-195 683.7 452 71.7
CARHR059800 Cardamine hirsuta HOM05D005577 ORTHO05D006941 1.3e-194 683.3 439 72.4
HPP92_020263 Vanilla planifolia HOM05D005577 ORTHO05D006941 2.1e-194 682.6 458 72.3
BolC2t08435H Brassica oleracea HOM05D005577 ORTHO05D006941 4.0e-193 678.3 472 68.6
Solyc04g045530.4 Solanum lycopersicum HOM05D005577 ORTHO05D006941 4.0e-193 678.3 435 76.1
THA.LOC104825491 Tarenaya hassleriana HOM05D005577 ORTHO05D006941 6.9e-193 677.6 452 72.8
BraA02t06478Z Brassica rapa HOM05D005577 ORTHO05D006941 9.0e-193 677.2 481 67.8
HanXRQChr12g0354651 Helianthus annuus HOM05D005577 ORTHO05D006941 2.0e-192 676.0 456 71.7
ECA233G0246 Erigeron canadensis HOM05D005577 ORTHO05D006941 4.5e-192 674.9 445 73.0
HanXRQChr12g0357271 Helianthus annuus HOM05D005577 ORTHO05D006941 4.9e-191 671.4 456 71.5
PSO017G5787 Papaver somniferum HOM05D005577 ORTHO05D006941 4.9e-191 671.4 456 70.4
Hma1.2p1_0065F.1_g035160 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 9.3e-190 667.2 453 73.1
Zm00001eb421110 Zea mays HOM05D005577 ORTHO05D006941 1.2e-189 666.8 452 69.2
Os07g0406800 Oryza sativa ssp. japonica HOM05D005577 ORTHO05D006941 1.6e-189 666.4 459 68.6
Ah.03g135990 Amaranthus hybridus HOM05D005577 ORTHO05D006941 1.0e-188 663.7 452 71.0
Lsat_1_v5_gn_2_63520 Lactuca sativa HOM05D005577 ORTHO05D006941 1.3e-188 663.3 452 70.4
CDE05G3041 Ceratophyllum demersum HOM05D005577 ORTHO05D006941 5.7e-187 657.9 448 70.5
Prupe.1G223400 Prunus persica HOM05D005577 ORTHO05D006941 7.6e-184 647.5 442 72.4
CAN.G97.33 Capsicum annuum HOM05D005577 ORTHO05D006941 1.7e-183 646.4 458 70.3
SEGI_29210 Sequoiadendron giganteum HOM05D005577 ORTHO05D006941 2.9e-183 645.6 430 69.1
Sabra03G0124100 Salix brachista HOM05D005577 ORTHO05D006941 5.0e-183 644.8 484 68.4
MELO3C022319.2 Cucumis melo HOM05D005577 ORTHO05D006941 1.3e-180 636.7 417 73.1
ClCG06G002100 Citrullus lanatus HOM05D005577 ORTHO05D006941 3.0e-180 635.6 452 68.8
vmacro17973 Vaccinium macrocarpon HOM05D005577 ORTHO05D006941 3.3e-179 632.1 504 65.5
SGA_v2.0_scaffold114G31915 Striga asiatica HOM05D005577 ORTHO05D006941 4.3e-179 631.7 467 68.1
BcaC03g14832 Brassica carinata HOM05D005577 ORTHO05D006941 4.8e-178 628.2 416 71.4
unitig_699.g19962 Utricularia gibba HOM05D005577 ORTHO05D006941 9.1e-177 624.0 487 64.1
Actinidia09628 Actinidia chinensis HOM05D005577 ORTHO05D006941 1.3e-175 620.2 411 74.5
QL02p017501 Quercus lobata HOM05D005577 ORTHO05D006941 7.2e-174 614.4 409 73.1
Aa31LG2G15630 Aethionema arabicum HOM05D005577 ORTHO05D006941 5.1e-172 608.2 461 65.3
Zm00001eb407100 Zea mays HOM05D005577 ORTHO05D006941 1.5e-168 596.7 388 70.9
Cpa.g.sc43.82 Carica papaya HOM05D005577 ORTHO05D006941 4.2e-166 588.6 452 65.0
AUR62028904 Chenopodium quinoa HOM05D005577 ORTHO05D006941 4.2e-166 588.6 471 63.5
FvH4_4g14550 Fragaria vesca HOM05D005577 ORTHO05D006941 1.2e-165 587.0 363 76.9
AUR62005646 Chenopodium quinoa HOM05D005577 ORTHO05D006941 3.3e-163 578.9 452 63.5
Mapoly0051s0085 Marchantia polymorpha HOM05D005577 ORTHO05D006941 9.1e-161 570.9 451 60.5
AagrBONN_evm.TU.Sc2ySwM_362.1325 Anthoceros agrestis HOM05D005577 ORTHO05D006941 4.8e-154 548.5 450 58.9
CBR_g45479 Chara braunii HOM05D005577 ORTHO05D006941 9.1e-153 544.3 430 59.1
SMO340G0130 Selaginella moellendorffii HOM05D005577 ORTHO05D006941 1.2e-149 533.9 429 60.8
Psat7g076760 Pisum sativum HOM05D005577 ORTHO05D006941 2.7e-149 532.7 279 91.0
Pp3c17_16180 Physcomitrium patens HOM05D005577 ORTHO05D006941 8.3e-146 521.2 434 56.2
Hma1.2p1_0065F.1_g035170 Hydrangea macrophylla HOM05D005577 ORTHO05D006941 1.1e-145 520.8 322 77.3
BcaB05g24262 Brassica carinata HOM05D005577 ORTHO05D006941 7.8e-136 488.0 458 57.9
TAR371G1028 Trochodendron aralioides HOM05D005577 ORTHO05D006941 3.6e-117 426.0 452 54.0
MCO02G430 Micromonas commoda HOM05D005577 ORTHO05D006941 5.4e-113 412.1 434 45.4
PRCOL_00003669 Prasinoderma coloniale HOM05D005577 ORTHO05D006941 4.0e-108 396.0 441 48.3
QL03p057485 Quercus lobata HOM05D005577 ORTHO05D006941 3.8e-98 362.8 367 54.5
MD09G1083700 Malus domestica HOM05D005577 ORTHO05D006941 9.3e-97 358.2 316 59.2
Cre06.g293000 Chlamydomonas reinhardtii HOM05D005577 ORTHO05D006941 8.4e-90 335.1 484 39.3
Aqoxy7G01339 Aquilegia oxysepala HOM05D005577 ORTHO05D006941 8.4e-82 308.5 182 79.1
Psat7g076800 Pisum sativum HOM05D005577 ORTHO05D006941 7.4e-78 295.4 189 79.4
MD16G1122200 Malus domestica HOM05D005577 ORTHO05D006941 1.2e-56 224.9 356 39.0
RcHm_v2.0_Chr4g0417261 Rosa chinensis HOM05D005577 ORTHO05D006941 1.4e-52 211.5 374 38.0
Atru.chr11.2352 Acer truncatum HOM05D005577 ORTHO05D006941 3.1e-52 210.3 108 87.0
Dinv17584 Davidia involucrata HOM05D005577 ORTHO05D006941 3.5e-43 180.3 403 33.0
Atru.chr11.2354 Acer truncatum HOM05D005577 ORTHO05D006941 8.5e-42 175.6 127 72.4
Atru.chr11.2353 Acer truncatum HOM05D005577 ORTHO05D006941 1.9e-41 174.5 124 71.0
RcHm_v2.0_Chr4g0417231 Rosa chinensis HOM05D005577 ORTHO05D006941 2.7e-35 154.1 137 58.4
SHI17983 Sapria himalayana HOM05D005577 ORTHO05D006941 1.0e-31 142.1 106 65.1
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 3.7e-29 133.7 85 67.1
Lsat_1_v5_gn_0_16180 Lactuca sativa HOM05D005577 ORTHO05D006941 5.5e-25 119.8 127 47.2
A10p10750 Brassica napus HOM05D005577 ORTHO05D006941 1.5e-22 111.7 67 71.6
Potri.017G053801 Populus trichocarpa HOM05D005577 ORTHO05D006941 1.8e-20 104.8 53 81.1
QL10p065845 Quercus lobata HOM05D000176 ORTHO05D000106 5.4e-20 103.2 146 43.8
MCO16G135 Micromonas commoda HOM05D005577 ORTHO05D267611 2.0e-19 101.3 215 27.9
RcHm_v2.0_Chr4g0417241 Rosa chinensis HOM05D005577 ORTHO05D006941 5.0e-18 96.7 67 67.2
MD16G1122100 Malus domestica HOM05D005577 ORTHO05D006941 6.6e-18 96.3 75 60.0
Duzib268G0110 Durio zibethinus HOM05D005577 ORTHO05D006941 3.6e-16 90.5 106 51.9
SHI17982 Sapria himalayana HOM05D005577 ORTHO05D006941 4.7e-16 90.1 70 58.6
SHI17981 Sapria himalayana HOM05D005577 ORTHO05D006941 2.4e-12 77.8 56 71.4
VMungo0720G2142 Vigna mungo HOM05D008589 ORTHO05D010715 2.0e-06 58.2 65 52.3


User provided reference genes

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