Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1978.4 999 100.0
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1770.0 1078 84.3
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1687.9 962 88.9
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1628.6 1010 82.5
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1624.0 1007 82.6
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1599.7 1004 82.6
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1598.9 1010 81.4
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1591.2 1010 80.8
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1580.5 1011 79.4
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1514.6 1015 76.4
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1491.5 1016 75.5
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1487.2 1008 75.0
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1486.5 1018 75.0
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1484.9 1013 74.6
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1474.9 1015 74.4
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1470.7 1025 73.4
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1468.8 1010 74.0
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1466.1 1009 73.5
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1465.7 1011 73.7
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1460.3 1010 73.7
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1458.4 1015 72.7
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1453.3 1011 72.7
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1446.8 1011 72.6
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1446.4 1020 73.2
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1444.9 1015 72.9
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1443.3 1036 71.0
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1441.8 1015 72.9
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1441.0 1033 71.3
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1439.5 1009 72.6
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1438.3 1036 71.0
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1436.4 1021 72.5
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1431.8 1018 71.7
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1431.4 1052 70.0
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1428.3 1022 71.9
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1427.5 1021 71.5
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1427.5 1012 72.5
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1424.5 965 75.3
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1423.3 1011 72.6
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1422.1 1007 72.3
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1421.8 1011 71.5
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1420.6 1016 72.4
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1419.8 1024 71.2
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1419.4 1016 71.9
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1417.5 1021 70.8
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1416.0 1017 71.6
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1412.1 1020 70.5
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1411.7 1020 70.4
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1406.0 1009 70.9
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1405.2 1017 71.3
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1402.9 1012 71.4
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1402.1 1011 72.7
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1397.9 1013 70.4
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1397.5 1010 70.8
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1397.5 1010 70.8
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1397.1 1008 70.3
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1394.8 1011 70.1
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1393.3 1010 70.9
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1390.9 1008 70.5
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1390.2 1008 70.5
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1389.8 1008 70.4
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1389.4 1007 72.4
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1388.6 1014 72.1
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1388.2 1008 70.3
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1387.9 1059 68.6
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1384.8 1014 70.1
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1384.0 1008 70.3
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1383.2 971 72.7
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1382.1 1011 69.6
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1380.5 1013 69.6
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1380.2 1013 69.9
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1378.2 1011 69.4
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1377.8 1022 70.3
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1375.5 1025 69.9
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1372.5 1025 69.1
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1370.5 1015 69.4
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1369.8 1010 69.9
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1368.6 1042 69.1
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1366.3 1011 69.8
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1355.1 935 74.8
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1352.4 1039 67.6
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1351.3 1033 68.0
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1346.6 1030 68.7
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1346.3 1046 66.8
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1342.0 985 70.8
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1335.9 1023 67.1
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1316.2 1108 63.3
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1314.7 1000 66.6
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1310.0 1010 67.9
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1307.4 1012 66.5
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1296.2 1037 65.7
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1292.7 1015 67.5
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1281.5 1012 64.5
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1280.8 982 68.0
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1280.4 1144 60.0
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1275.4 1014 65.9
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1267.7 998 66.4
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1263.4 1177 58.1
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1259.6 1005 65.9
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1255.7 1031 64.5
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1255.4 1010 65.0
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1251.1 1017 65.6
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1245.7 1005 65.2
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1230.3 1017 64.8
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1225.3 971 66.5
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1220.7 1009 63.7
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 0.0e+00 1202.2 1044 62.5
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1201.8 1001 63.1
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1201.4 922 68.7
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1198.7 1000 61.7
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1192.6 937 65.1
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1190.3 1017 63.2
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1181.0 1014 61.2
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1177.5 1013 62.9
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 0.0e+00 1162.9 867 70.6
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 0.0e+00 1155.2 1004 59.0
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 0.0e+00 1143.3 891 67.3
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 0.0e+00 1104.7 935 60.9
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1095.1 985 61.6
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1082.0 865 66.6
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 5.0e-305 1051.2 811 67.6
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 1.6e-298 1029.6 640 83.1
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 5.0e-289 998.0 945 57.8
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 7.1e-275 951.0 872 59.2
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 2.1e-266 922.9 1037 50.5
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 6.8e-262 907.9 1047 50.0
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.4e-259 900.2 773 62.6
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.2e-250 870.5 975 49.1
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 1.3e-249 867.1 630 71.1
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 3.1e-246 855.9 626 71.1
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 1.1e-235 820.8 1021 46.0
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.0e-229 800.0 1020 45.5
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 2.4e-222 776.5 1227 40.6
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 3.9e-217 759.2 623 63.4
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.6e-210 737.3 871 45.2
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 6.7e-209 731.9 385 94.8
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 3.9e-172 609.8 438 74.0
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 5.0e-172 609.4 471 70.7
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.5e-168 597.8 355 83.7
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 3.9e-156 556.6 389 73.5
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.9e-143 513.8 556 52.0
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 2.8e-138 497.3 533 52.0
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.1e-109 401.4 281 73.3
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 7.4e-107 392.9 258 79.5
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 5.5e-102 376.7 205 84.9
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 3.6e-101 374.0 237 80.2
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 4.7e-93 347.1 230 79.1
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 7.2e-86 323.2 238 67.2
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 5.9e-80 303.5 827 29.1
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 1.7e-74 285.4 162 82.1
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 2.7e-72 278.1 260 62.3
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.0e-71 276.2 150 85.3
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 3.2e-70 271.2 281 58.4
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 2.8e-66 258.1 174 72.4
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 5.0e-47 194.1 114 78.9
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 7.3e-46 190.3 474 31.2
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.1e-44 186.4 147 70.1
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.2e-43 183.0 153 61.4
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 1.7e-42 179.1 193 56.0
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 8.3e-42 176.8 132 72.0
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.8e-40 170.2 90 80.0
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 2.0e-35 155.6 129 62.0
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 7.1e-33 147.1 105 74.3
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.8e-29 135.2 113 59.3
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 3.6e-29 134.8 77 79.2
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 7.1e-25 120.6 80 72.5
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 9.3e-25 120.2 96 62.5
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 1.8e-20 105.9 98 55.1
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 1.8e-20 105.9 98 55.1
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 6.9e-20 104.0 80 63.8
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 7.1e-17 94.0 78 57.7
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 3.9e-15 88.2 107 53.3
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.5e-11 76.3 46 78.3
BcaB07g32536 Brassica carinata HOM05D001026 ORTHO05D023993 2.6e-11 75.5 80 53.8
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 2.2e-10 72.4 50 68.0
Psat3g007840 Pisum sativum HOM05D001026 ORTHO05D005232 9.3e-09 67.0 65 49.2


User provided reference genes

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