Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 2.8e-217 758.4 415 100.0
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 3.4e-191 671.8 415 90.4
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 3.5e-188 661.8 418 85.4
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 2.1e-172 609.4 420 79.5
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 8.0e-164 580.9 418 77.0
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 3.5e-159 565.5 418 75.4
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 4.2e-157 558.5 418 73.7
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 6.1e-156 554.7 419 74.0
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 6.8e-155 551.2 417 72.7
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 1.3e-150 537.0 420 71.2
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 1.3e-150 537.0 420 71.2
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 2.3e-134 483.0 427 63.5
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 1.1e-133 480.7 421 63.9
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 4.0e-131 472.2 423 62.2
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 2.6e-130 469.5 433 60.5
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 3.4e-130 469.2 422 62.6
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 9.8e-130 467.6 428 61.7
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 3.7e-129 465.7 425 61.2
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 1.9e-128 463.4 431 60.8
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 2.4e-128 463.0 431 61.9
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 3.2e-128 462.6 428 60.0
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 9.2e-128 461.1 424 62.7
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 9.2e-128 461.1 345 71.0
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 1.6e-127 460.3 429 61.3
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 3.9e-126 455.7 429 59.4
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 5.0e-126 455.3 429 59.7
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 1.1e-125 454.1 419 61.6
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 1.9e-125 453.4 430 59.8
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 1.9e-125 453.4 439 58.3
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 7.3e-125 451.4 425 62.1
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 9.5e-125 451.1 431 60.3
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 1.4e-123 447.2 438 60.0
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 2.3e-123 446.4 350 68.9
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 2.3e-123 446.4 421 59.9
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.1e-123 446.0 430 61.4
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 8.9e-123 444.5 430 63.0
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.5e-122 443.7 430 61.2
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 3.4e-122 442.6 421 59.9
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 5.8e-122 441.8 430 61.6
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 7.5e-122 441.4 336 70.8
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 1.3e-121 440.7 438 57.3
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 1.3e-121 440.7 433 58.2
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 4.9e-121 438.7 421 59.4
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 4.1e-120 435.6 422 59.2
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 6.0e-119 431.8 379 63.3
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 1.3e-118 430.6 418 58.9
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 1.7e-118 430.3 430 61.6
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 3.0e-118 429.5 440 58.6
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 3.0e-118 429.5 419 59.7
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 5.1e-118 428.7 428 57.9
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 6.6e-118 428.3 427 57.1
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 8.6e-118 427.9 417 58.3
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 5.6e-117 425.2 436 58.0
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 1.2e-116 424.1 430 62.1
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 1.2e-116 424.1 432 59.5
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 1.2e-116 424.1 417 59.0
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 1.6e-116 423.7 440 58.0
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.1e-116 423.3 429 57.3
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 2.8e-116 422.9 420 59.0
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 3.6e-116 422.5 426 58.5
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 3.6e-116 422.5 421 56.8
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 3.6e-116 422.5 435 57.2
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 3.6e-116 422.5 431 60.6
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 4.7e-116 422.2 421 57.5
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 1.8e-115 420.2 426 60.1
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 2.3e-115 419.9 420 56.4
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 2.3e-115 419.9 387 61.8
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 6.8e-115 418.3 431 61.9
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 6.8e-115 418.3 425 57.9
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 1.2e-114 417.5 538 48.3
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 1.5e-114 417.2 417 59.0
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 2.0e-114 416.8 431 58.5
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 4.4e-114 415.6 426 59.6
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 7.6e-114 414.8 429 56.4
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 7.6e-114 414.8 427 57.6
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 9.9e-114 414.5 426 59.6
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 8.4e-113 411.4 341 65.7
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 1.4e-112 410.6 424 56.1
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 1.4e-112 410.6 418 57.4
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 3.2e-112 409.5 438 58.9
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 1.2e-111 407.5 430 54.7
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 1.6e-111 407.1 444 54.5
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 1.6e-111 407.1 437 59.0
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 1.6e-111 407.1 429 54.3
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 2.1e-111 406.8 421 55.3
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 2.7e-111 406.4 340 64.7
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 3.5e-111 406.0 415 56.4
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 1.7e-110 403.7 334 65.0
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 3.3e-109 399.4 453 53.2
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 4.3e-109 399.1 433 53.6
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 7.3e-109 398.3 404 55.7
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 1.4e-107 394.0 423 56.7
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 1.5e-106 390.6 428 58.9
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 2.0e-106 390.2 428 58.9
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 2.2e-105 386.7 418 56.0
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 5.4e-104 382.1 430 58.1
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 1.7e-102 377.1 331 68.0
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 5.3e-99 365.5 342 57.9
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 1.4e-91 340.9 327 59.6
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 9.0e-91 338.2 354 54.2
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 1.1e-88 331.3 334 53.3
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 2.4e-88 330.1 308 60.1
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 1.2e-82 311.2 269 61.7
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 3.2e-80 303.1 336 55.4
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 2.2e-73 280.4 263 57.8
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 6.5e-73 278.9 414 41.3
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 1.0e-70 271.6 328 48.2
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 3.0e-70 270.0 344 44.8
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 1.1e-64 251.5 207 64.3
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.4e-62 244.6 315 46.7
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 1.4e-54 218.0 355 39.2
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 1.2e-42 178.3 261 51.0
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 1.9e-40 171.0 128 67.2
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 4.7e-39 166.4 210 47.6
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 5.0e-33 146.4 88 78.4
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 1.3e-25 121.7 344 27.9
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 1.9e-24 117.9 404 25.7
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 2.3e-17 94.4 79 64.6
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 5.0e-17 93.2 158 41.8
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 1.9e-11 74.7 322 26.1
SHI23188 Sapria himalayana HOM05D006391 ORTHO05D007767 3.0e-09 67.4 117 39.3
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 2.5e-08 64.3 60 51.7
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 7.3e-08 62.8 46 65.2
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.2e-07 62.0 56 53.6
BolC3t13192H Brassica oleracea HOM05D006391 ORTHO05D007767 4.0e-06 57.0 190 27.4


User provided reference genes

Program Settings