Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 0.0e+00 1562.4 832 100.0
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 0.0e+00 1559.7 832 99.5
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 0.0e+00 1412.5 826 90.8
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 0.0e+00 1389.0 824 89.0
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 0.0e+00 1384.4 831 88.3
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 0.0e+00 1270.0 832 81.4
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 0.0e+00 1267.3 832 81.0
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 0.0e+00 1258.4 832 80.9
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 0.0e+00 1256.9 826 80.8
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 0.0e+00 1254.2 825 80.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 0.0e+00 1246.9 824 80.6
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 0.0e+00 1202.6 828 78.1
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 0.0e+00 1197.2 822 77.4
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 0.0e+00 1139.8 830 74.9
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.7e-311 1072.4 830 69.5
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.3e-306 1056.2 565 98.6
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 3.8e-306 1054.7 832 69.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 4.2e-305 1051.2 832 69.0
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 5.3e-300 1034.2 828 67.5
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 1.5e-299 1032.7 830 68.6
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 2.6e-299 1031.9 830 68.3
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.3e-295 1019.6 830 67.3
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 3.9e-295 1018.1 829 66.5
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 3.3e-294 1015.0 828 67.0
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 5.6e-294 1014.2 829 67.2
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 9.6e-294 1013.4 828 66.3
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.8e-293 1011.1 829 65.7
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 4.8e-293 1011.1 838 66.0
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 1.4e-292 1009.6 829 67.1
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 7.6e-291 1003.8 833 65.4
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 1.3e-290 1003.0 827 65.9
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.1e-288 995.7 830 65.7
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 3.5e-288 995.0 827 65.9
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 6.0e-288 994.2 826 66.1
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 2.8e-285 985.3 833 64.5
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 2.8e-285 985.3 831 65.3
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 3.7e-285 984.9 827 65.4
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 4.8e-285 984.6 825 65.6
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.4e-284 983.0 828 65.9
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 1.8e-284 982.6 837 65.5
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 7.7e-283 977.2 832 64.3
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 2.9e-282 975.3 830 63.7
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.9e-282 975.3 838 64.8
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.1e-281 973.4 831 64.4
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 2.7e-280 968.8 829 63.7
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 3.3e-278 961.8 842 63.4
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.3e-277 959.9 838 63.8
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 1.4e-276 956.4 837 64.5
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 4.1e-276 954.9 833 62.7
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 7.7e-275 950.7 830 62.9
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 3.8e-274 948.3 825 62.9
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 1.9e-273 946.0 829 63.1
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 6.7e-271 937.6 829 62.6
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 1.7e-269 932.9 845 62.1
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 2.8e-269 932.2 830 61.3
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 3.8e-266 921.8 831 61.1
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-265 920.2 832 61.1
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 3.9e-263 911.8 828 61.5
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.1e-262 910.2 827 60.2
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.8e-261 904.8 842 60.3
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.1e-260 901.7 838 61.3
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 2.0e-259 899.4 825 60.0
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 6.5e-258 894.4 830 59.8
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 1.5e-257 893.3 857 59.2
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 9.4e-257 890.6 826 60.0
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 6.1e-256 887.9 837 60.1
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 1.5e-254 883.2 836 59.7
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 3.1e-252 875.5 836 59.1
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.8e-250 868.6 842 58.2
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 9.4e-249 864.0 817 58.4
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 3.6e-248 862.1 924 54.5
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.0e-243 846.3 829 57.8
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 3.5e-243 845.5 841 57.6
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 5.0e-242 841.6 871 55.9
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 9.5e-241 837.4 812 57.6
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 2.8e-240 835.9 832 58.4
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 8.9e-239 830.9 841 56.1
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 2.6e-238 829.3 776 60.1
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 2.8e-237 825.9 813 57.3
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 8.3e-237 824.3 817 57.4
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 8.3e-237 824.3 817 57.4
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 8.3e-237 824.3 811 57.1
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.4e-236 823.5 828 55.9
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.8e-236 823.2 817 57.6
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 2.4e-236 822.8 817 57.0
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 2.4e-236 822.8 817 57.0
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 5.0e-234 815.1 862 55.6
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 3.6e-232 808.9 851 55.8
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 6.8e-231 804.7 829 55.7
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.5e-230 803.5 818 56.4
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 2.2e-229 799.7 860 54.3
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 9.2e-228 794.3 821 54.6
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 2.3e-223 779.6 836 54.3
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 4.0e-223 778.9 830 56.3
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 4.9e-213 745.3 683 59.9
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 9.2e-212 741.1 682 60.9
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 9.9e-206 721.1 833 51.4
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.0e-202 711.1 827 51.0
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 9.6e-201 704.5 832 49.6
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 3.1e-199 699.5 817 50.9
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 6.2e-192 675.2 594 60.9
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.0e-174 617.1 602 58.1
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 2.9e-173 613.2 601 57.9
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 7.4e-153 545.4 857 40.3
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 2.2e-144 517.3 452 62.2
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.0e-135 485.7 486 57.2
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.6e-134 484.6 386 68.1
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 2.7e-134 483.8 835 39.3
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 2.5e-132 477.2 875 37.3
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 1.7e-128 464.5 379 65.7
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.8e-127 461.1 787 39.3
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.7e-125 454.5 428 60.5
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 6.6e-117 426.0 448 56.0
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.6e-109 399.4 311 66.9
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 7.8e-102 375.9 906 32.5
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 9.2e-95 352.4 444 48.0
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 6.6e-93 346.3 296 67.9
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 2.5e-92 344.4 291 62.5
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 9.6e-92 342.4 325 60.0
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.5e-89 335.1 181 95.6
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.4e-82 311.2 337 52.5
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 7.9e-78 296.2 232 67.7
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 7.9e-78 296.2 232 67.2
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 2.8e-75 287.7 211 69.2
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 2.9e-72 277.7 226 64.2
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 2.5e-68 264.6 268 59.7
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.5e-60 238.8 830 28.8
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 5.3e-58 230.3 196 65.8
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 3.9e-53 214.2 144 74.3
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 2.4e-50 204.9 217 53.9
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 8.2e-43 179.9 170 60.6
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.1e-39 169.5 143 65.0
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 2.5e-39 168.3 106 80.2
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.4e-37 162.5 156 59.0
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.7e-35 155.6 205 46.8
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 3.7e-35 154.5 152 57.2
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.5e-31 141.7 106 66.0
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 5.5e-31 140.6 277 40.1
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 8.0e-30 136.7 275 39.6
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 2.3e-29 135.2 282 39.0
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 9.7e-28 129.8 516 25.2
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 6.3e-27 127.1 562 26.5
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.7e-25 121.7 182 43.4
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 7.7e-25 120.2 71 73.2
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.5e-23 115.2 73 80.8
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 4.7e-22 110.9 664 24.7
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 3.0e-21 108.2 118 51.7
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.1e-18 99.8 76 68.4
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 5.4e-18 97.4 197 42.6
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 9.1e-18 96.7 111 51.4
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.6e-17 95.9 200 42.0
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 8.5e-16 90.1 89 61.8
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 1.2e-14 86.3 173 36.4
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 8.8e-13 80.1 50 76.0
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.2e-12 79.7 120 46.7
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 3.7e-11 74.7 54 70.4
arahy.Tifrunner.gnm1.ann1.BR68XX Arachis hypogaea HOM05D002764 ORTHO05D002960 8.3e-11 73.6 89 55.1
FAN24G0390 Fragaria x ananassa HOM05D004092 ORTHO05D016651 7.0e-10 70.5 60 58.3
FvH4_6g51840 Fragaria vesca HOM05D004092 ORTHO05D016651 1.6e-09 69.3 68 54.4
FAN01G1588 Fragaria x ananassa HOM05D004092 ORTHO05D016651 1.6e-09 69.3 68 54.4
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 3.5e-09 68.2 65 52.3
arahy.Tifrunner.gnm1.ann1.3YA0AF Arachis hypogaea HOM05D004092 ORTHO05D005448 2.5e-07 62.0 55 63.6
arahy.Tifrunner.gnm1.ann1.TP987Q Arachis hypogaea HOM05D004092 ORTHO05D016651 9.5e-07 60.1 100 48.0
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 9.5e-07 60.1 152 29.6
arahy.Tifrunner.gnm1.ann1.K8XNS5 Arachis hypogaea HOM05D004092 ORTHO05D005448 1.6e-06 59.3 79 53.2
FAN14G4793 Fragaria x ananassa HOM05D004092 ORTHO05D016651 3.6e-06 58.2 55 56.4


User provided reference genes

Program Settings