Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.0e-283 976.9 497 100.0
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.8e-169 598.2 410 80.5
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-168 596.7 410 80.2
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.1e-167 592.0 410 80.2
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 2.9e-152 542.7 410 73.9
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.6e-150 537.0 390 77.7
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 1.9e-148 530.0 410 71.7
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 9.9e-145 517.7 408 70.8
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.6e-139 500.4 410 66.6
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 3.1e-138 496.1 410 66.8
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 6.9e-138 495.0 410 66.6
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 5.8e-137 491.9 402 66.7
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.3e-136 490.7 410 65.6
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.1e-135 487.6 407 65.8
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 1.5e-132 477.2 409 64.1
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 2.5e-132 476.5 408 65.0
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.6e-131 473.8 401 63.6
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.4e-130 470.7 408 63.0
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.2e-129 467.6 407 63.9
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 4.5e-129 465.7 406 64.3
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 5.8e-129 465.3 407 64.4
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.0e-128 464.5 418 62.2
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.3e-128 464.2 399 63.9
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 3.8e-128 462.6 387 64.6
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 8.4e-128 461.5 397 63.7
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.4e-127 460.7 405 62.2
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 1.2e-126 457.6 412 62.4
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 1.2e-126 457.6 409 62.3
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 2.1e-126 456.8 396 64.9
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 3.5e-126 456.1 406 63.3
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 3.5e-126 456.1 406 64.3
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 6.0e-126 455.3 396 62.9
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.8e-125 453.8 399 62.7
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 2.3e-125 453.4 399 62.7
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 3.0e-125 453.0 397 63.5
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 6.7e-125 451.8 392 63.0
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.1e-124 451.1 395 62.3
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.5e-124 449.9 409 60.9
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.5e-124 449.9 397 62.7
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 4.3e-124 449.1 410 60.7
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 4.3e-124 449.1 395 62.5
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 5.7e-124 448.7 399 62.7
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 7.4e-124 448.4 379 64.4
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 9.6e-124 448.0 395 62.3
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 9.6e-124 448.0 410 62.0
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.3e-123 447.6 398 61.8
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 2.1e-123 446.8 409 60.4
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.7e-123 446.0 395 62.3
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 4.8e-123 445.7 396 63.1
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.4e-122 444.1 388 62.4
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 2.4e-122 443.4 396 62.9
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.4e-122 443.4 406 61.3
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 2.4e-122 443.4 406 61.3
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 6.9e-122 441.8 400 62.0
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 2.0e-121 440.3 397 61.5
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 4.5e-121 439.1 436 58.3
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 5.9e-121 438.7 399 59.9
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 5.9e-121 438.7 399 59.9
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 5.9e-121 438.7 404 61.4
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 7.6e-121 438.3 396 62.4
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.0e-120 438.0 398 61.3
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.3e-120 437.6 419 59.4
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.9e-120 436.4 380 64.5
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 5.0e-120 435.6 407 60.0
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 5.0e-120 435.6 405 62.7
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 7.2e-119 431.8 378 63.5
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 7.2e-119 431.8 386 61.7
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 9.3e-119 431.4 397 61.2
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 1.2e-118 431.0 398 60.1
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.6e-118 430.6 323 74.9
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.1e-118 430.3 411 58.4
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 2.7e-118 429.9 404 59.9
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 3.6e-118 429.5 398 59.8
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 4.6e-118 429.1 394 60.7
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 7.9e-118 428.3 398 59.5
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 1.0e-117 427.9 409 58.2
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 1.0e-117 427.9 402 58.0
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 1.3e-117 427.6 401 58.6
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.8e-117 427.2 403 57.8
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 2.3e-117 426.8 405 58.3
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.3e-117 426.8 398 60.1
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 2.3e-117 426.8 397 60.2
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.0e-117 426.4 402 58.5
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 3.0e-117 426.4 402 57.7
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.0e-117 426.4 402 58.2
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 3.9e-117 426.0 400 59.2
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 5.1e-117 425.6 402 58.2
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 6.7e-117 425.2 405 58.0
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 6.7e-117 425.2 405 58.0
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 8.7e-117 424.9 392 61.0
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 8.7e-117 424.9 394 59.6
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 1.1e-116 424.5 409 57.5
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.5e-116 424.1 399 59.4
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 1.9e-116 423.7 400 59.0
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.3e-116 422.9 402 57.7
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 4.3e-116 422.5 399 60.7
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 5.7e-116 422.2 402 59.2
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 5.7e-116 422.2 402 58.7
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 7.4e-116 421.8 392 59.4
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 9.7e-116 421.4 413 56.2
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.3e-115 421.0 402 58.7
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 4.8e-115 419.1 399 58.6
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 6.3e-115 418.7 393 60.8
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 8.2e-115 418.3 403 58.3
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 8.2e-115 418.3 396 59.1
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.4e-114 417.5 405 57.0
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.5e-113 414.1 401 57.1
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 2.5e-111 406.8 388 59.3
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 1.6e-110 404.1 400 56.5
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 1.4e-109 401.0 400 56.2
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 5.1e-109 399.1 403 57.1
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 8.8e-109 398.3 369 59.9
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 7.4e-108 395.2 396 57.1
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.3e-107 394.4 414 55.1
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.8e-107 393.3 394 57.4
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 3.7e-107 392.9 567 44.6
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 8.2e-107 391.7 405 55.8
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 5.3e-106 389.0 392 55.4
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.0e-105 387.1 369 58.5
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 7.7e-105 385.2 404 56.2
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 5.0e-104 382.5 418 52.9
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.9e-103 380.6 399 54.6
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 4.2e-103 379.4 388 56.7
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 5.5e-103 379.0 389 56.0
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 2.6e-100 370.2 432 51.4
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 2.6e-100 370.2 413 51.6
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 2.6e-100 370.2 405 51.6
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 2.8e-99 366.7 420 50.5
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 4.8e-99 365.9 468 49.1
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 6.3e-99 365.5 426 50.5
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 6.5e-96 355.5 400 53.0
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 1.6e-94 350.9 396 51.3
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 3.3e-92 343.2 401 51.4
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 2.2e-91 340.5 386 49.5
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.8e-91 339.3 226 81.4
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 7.7e-89 332.0 453 45.3
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.0e-88 331.6 453 45.3
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.0e-88 331.6 217 82.5
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 7.5e-84 315.5 256 66.8
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 3.6e-78 296.6 452 42.3
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 9.8e-68 261.9 259 57.9
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-65 253.4 166 82.5
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.0e-64 250.4 225 62.7
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.7e-59 234.6 233 59.2
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 5.4e-58 229.6 229 59.4
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.9e-56 223.4 208 59.6
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.5e-55 221.5 186 66.1
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 6.6e-48 196.1 175 60.6
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.2e-46 191.8 111 82.9
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 5.2e-45 186.4 179 55.3
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 2.0e-44 184.5 190 55.3
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.9e-43 179.9 183 56.8
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.6e-41 174.9 181 53.0
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.6e-41 173.3 111 76.6
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 6.2e-38 162.9 158 56.3
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 2.4e-37 161.0 409 30.6
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 7.6e-36 156.0 185 50.3
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 4.9e-27 126.7 254 39.8
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.0e-24 117.5 61 95.1
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 5.3e-21 106.7 72 72.2
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 1.5e-20 105.1 60 81.7
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 3.4e-20 104.0 220 37.7
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 4.5e-20 103.6 69 71.0
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 8.4e-19 99.4 77 63.6
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.4e-18 98.6 63 76.2
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.2e-17 95.5 63 73.0
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.2e-17 95.5 63 73.0
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 9.6e-15 85.9 74 58.1
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 9.6e-15 85.9 75 61.3
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 2.1e-14 84.7 131 42.7
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 5.8e-12 76.6 46 71.7
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-09 68.9 75 48.0
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 5.7e-07 60.1 48 75.0
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 1.3e-06 58.9 129 36.4
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 1.6e-06 58.5 59 55.9


User provided reference genes

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